TCONS_00006236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006236
Unique NameTCONS_00006236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006236 ID=TCONS_00006236|Name=TCONS_00006236|organism=Clytia hemisphaerica|type=transcript|length=2484bp
ATTCCAGCGAACAGTCAAACTGACACTATTCTTTTTTTACTGTTCAggta
aattaaaaagataagcAATAATAAGAAAATGAAACTGGAATAGAAAATGT
AGGTTTCAAGTTGCCTTGGGCTGCTACTGCAAGGCAACTGTGCCAAGCTC
TTTGGAAATTACATCAATCTTAGCTAAAACAGTTGGCATCAACTCTCATC
TGGATTTTCTTCAACACATTGACTATTTGTTAAATGGGTTATCATACTTA
CAAATTAATAATATGTATAATATGTTTGCTATTATGTTTTGAATGGTGTT
GTGTTGAGGGACTTGCTGTCATATGGGATCCTTATCACCCATTattcTCA
TGCAAGGATCCTGTCGTAAATGTGAAAGAAACTGATTTGTTGAAATTTGT
ATGCCCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAACCC
TTCATGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGATTATGCA
AATTGCGATGCTAGAGATCATCTATCTGTATTACTAAACTGTACAGCCGC
ATATAGAACTACACAACATCGCATCACTCAAAATGCTCTTTCACCTGATG
CACCCTCTTTCACACCTGGAAAGACATATTATGTGATAGcCACAAGCTTT
CAAACATCAAATAACATCAACAATCTTGTTGGTGGTAGTTGTAATTATTC
TCAAGATGGAGCACATaatttgaaactcaaaattcaTGTTTGTGATGGCT
CAGATTCGTCATGCTCTGTGTGTGATAACGAAGCTTGTTTGTACAAAGAT
TGTGGCAAATCATGTGGCAATTGGACCAATGGGTATACTTTCAAACGTGA
TGGAGGATGTTTCAGTGTGGAGAAAAGATTATGCAATAATACTTTACTTG
GTATAACAAATCATGAAGAGCAGAGGGAGGTAGCTTTAGATTGCTATGAA
AATTGCACAACTTGGGAATTGAATAACTATTTCAAGAAGAATGACTTGTG
TTATGTTTCACAACTTCGTTACTGTAACGACTCTGTCAATAAAGATTGGA
ATAAAGTTAATTATCGTGAATTTAAACTAGATTGCTACACAAATTGCACA
GAGTGGGTGACTAGTAACcatttcaagaaaaatgatttATGTTTTGCAAC
GCAAAGACGTTTTTGTAATGACACTTTCactaatcaaataaacaaagttG
AATATCATGAAATTCAGCAAGATTGCCCAAAAACATGTTCGGCTTGGGAA
CAACTCAACCTTTATCAAAAAGGAGACAATTGTTACAAAGACGAAATTCG
TTCATGTAACATCTCAATACTGGAAAGTTTCAACAACAAAGAATATCGCC
AATCTATATTCGATTGCAAAGACAATTGTACTGACTTGATAACTTCATCA
ACTTTCGAACGTATTGGTTCGTGTTTTCTTTCAACAAAAAAGACATGTGT
GAATGAAGtattaaatatttcaagaaCTGAATACAATGAAACTGAAGTTG
ATTGTCCTACAATAGTAATTCCCACAGGTGCACCAAACAAAGGGGACCCA
GGTAGTGATGATGAAGAGCTTTACAAATACATGTTGATTCCTGTGGGAGC
TGTTTGTCTTATCATCGGCGTCGCTTTGGGTTGCATGGGTCATCGATATC
AGAATGTCAAGAATCGATGCAAGAATAATAACGTGTCACCAGAGATGAAC
CACAACAATGGACGCAACAGAGGTGGTGTAGCTAATCCTTCTTACACGCC
AGATTCCGTCATTATAAACGATACCCCTGAAATGATCCGAAATGGTGGAA
TTTAATATGCAACAATGCTATTAGATGTTTAAGAGATTGTgtatctttca
aattttccctACAACTCatgtcaaattttgaaatactttgtAGTGCTGCA
TAACATGAATACTCATATCACTCTTCAGCATCGAAGCATGATCGTGAACA
ACTTTGAGTTGATTAAATTctgatgaaattttttaaaggaCGAGTTCCTT
GTGTGTTTTGGAAATTTATATTTCAATCTTTAACTTGAaatcttcctttt
ctttttcttcgtaATCTCAAATTCTAATTATTTGCACTTTAACAAACAAG
ACTACTGTATTTATTAAGATTGTTTGCAAACGTCTCCTTGACGACCTGTG
TAGTCgctactttttttaaatttcaaaagatttgtgACTCTAACGTGTTT
CGACTAAttcttttctcaatttttttaaactttttcatcaTGTATATACA
GGAcctattctttttctttttttatattataaaatcatttttgagttatt
tatttctttattctAAGTTTTACTTGAGGTACTTTTTATACCAACACTAC
TAGTTGTAAAGATTAtcattttttaccaaaattattgtatatattatttt
gaatatttaaaatttaaaacaggTTAGACCTTGAaggttattttaaattt
ttgcacttttaggtaaaaaaattaCATGTGAACG
Run BLAST on NCBI

protein sequence of TCONS_00006236-protein

>TCONS_00006236-protein ID=TCONS_00006236-protein|Name=TCONS_00006236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=523bp
MGYHTYKLIICIICLLLCFEWCCVEGLAVIWDPYHPLFSCKDPVVNVKET
DLLKFVCPDKDISSKPNAHSSTLHEVAYLLDYTKEQDYANCDARDHLSVL
LNCTAAYRTTQHRITQNALSPDAPSFTPGKTYYVIATSFQTSNNINNLVG
GSCNYSQDGAHNLKLKIHVCDGSDSSCSVCDNEACLYKDCGKSCGNWTNG
YTFKRDGGCFSVEKRLCNNTLLGITNHEEQREVALDCYENCTTWELNNYF
KKNDLCYVSQLRYCNDSVNKDWNKVNYREFKLDCYTNCTEWVTSNHFKKN
DLCFATQRRFCNDTFTNQINKVEYHEIQQDCPKTCSAWEQLNLYQKGDNC
YKDEIRSCNISILESFNNKEYRQSIFDCKDNCTDLITSSTFERIGSCFLS
TKKTCVNEVLNISRTEYNETEVDCPTIVIPTGAPNKGDPGSDDEELYKYM
LIPVGAVCLIIGVALGCMGHRYQNVKNRCKNNNVSPEMNHNNGRNRGGVA
NPSYTPDSVIINDTPEMIRNGGI
Run BLAST on NCBI

transcript from alignment at sc0000066:262586..272606+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006236 ID=TCONS_00006236|Name=TCONS_00006236|organism=Clytia hemisphaerica|type=transcript|length=10021bp|location=Sequence derived from alignment at sc0000066:262586..272606+ (Clytia hemisphaerica)
ATTCCAGCGAACAGTCAAACTGACACTATTCTTTTTTTACTGTTCAggta
aattaaaaagataagcAATAATAAGAAAATGAAACTGGAATAGAAAATGT
AGGTTTCAAGTTGCCTTGGGCTGCTACTGCAAGGCAACTGTGCCAAGCTC
TTTGGAAATTACATCAATCTTAGCTAAAACAGTGAGTAGAATTACCTCGA
CTTTAATTATCTCTCCTCATAATTTTATTGCTTAATTCTTTTCATCTCCA
TTGCCAACTTTAATTAGTCTGTTTAATGACTTGTATACATGATTCATTTT
TGACTGTCTCTGTGAGTTTGAGAAAAAGTCTATATTTGTCCTAGTGTAAC
ACGAAAGAGTTTTATAAATTTAGGGTGttgaataatgtttttttttcgat
tttttttcgctAAATACAAatgattaaaatttttgtttgtttacttcCCG
GTCCAACCTTGCTATCAGTTTCGACCCtctgaaaaatttttgatttataa
atttATCTTGCTTTTTTGTCAATTACTACGTCAATACTTTATCTATACTA
TTTCAAAGACTGCCTTTTCATTCTCCCGTGATATACCTatgtttcttatg
aaaaaatcattgagTTACTAATAGTAAGATGACATTTATGAAATACTTTT
AATCATtaataataacaaaaaagtATGACTTTTAGATGATACATTAAGTC
ACATTTaaatgaaatcaacatcaataaatactttttttaataattttgtc
AGGTTGGCATCAACTCTCATCTGGATTTTCTTCAACACATTGACTATTTG
TTAAATGGGTTATCATACTTACAAATTAATAATATGTATAATATGTTTGC
TATTATGTTTTGAATGGTGTTGTGTTGAGGGACTTGCTGTCATATGGGAT
CCTTATCACCCATTGTAAGTATTAACATTAGGTAATGTTCATGCCCCTTT
GAACTATTTAGAAATACTTGGATTTTTTCATCTTGATGGTTCTTAGAAAA
TAGCTAGTTAGGGTCCATCAGTTCTCCCTTGCTTTCCAGATTACCTCTAG
GGCAAAAAGGTAATAGGTAGATTATCGATGGCAAGCATACAGCATATCAT
TGGAGACTTTTGCTAGAATGAATTCCACTTTTGGTTGACCAAATATTCTG
ATTTCTGCTCGGGTAGCCATTATccctttctttatttttctttcagattc
TCATGCAAGGATCCTGTCGTAAATGTGAAAGAAACTGATTTGTTGAAATT
TGTATGCCCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAA
CCCTTCATGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGATTAT
GCAAATTGCGATGCTAGAGGTATCAAATTGTGTATTGAAAGAATAAGGTT
TTTCTGCTTCAAGAAGAAGAAACTACCCTGAAGGAACTATTTTCGTGGAG
AATTATTTTTGGAGGATACCACCCAAGTTAGACTTCATTTCGAAATAGAA
ATTTAACAAGCAtaactttcttcttcttcttataatcattttctgggaaa
tttaaaatttcaactaTTGCCTTATCTCCCCTGATTTTGGTTTGAATCTC
ATCACTCCAACAAGTGTGCTAAATGAATCAATATTATTTTGACACTACAA
TGCATGATaataatgtcttcttttttcatatCTAGATCATCTATCTGTAT
TACTAAACTGTACAGCCGCATATAGAACTACACAACATCGCATCACTCAA
AATGCTCTTTCACCTGATGCACCCTCTTTCACACCTGGAAAGACATATTA
TGTGATAGGCAAGGGAAAGTTTTATTCATGTCTTGTGTAGGCCATTCATA
AGGGTGTTTACATCCCTCATGGCGACTGAGTATCGGAAATTAGCCCCTTT
TTATCATGGTACgcagaattcaaaaaaaatcttgacAGAATCGAGAAAAT
TTAGGCCTGCTCTTTTAGACAGAAAATTAGGCTTTTAGGCCGGATGATTT
GGATGATAAATTTCGTCATTTTGCATTGTATGGTCAAATCCTTTCTTGTC
AAAGAAATTATCGATGGTAAAATTTTGGTTTTCATTAAATGATAACCTGG
CAGAAATTGGGGAAAAATGATAAATGGTGGAAGAAGATACCCTCTGAAGC
CTCCCTCATGCTCCCTGCTATCTAAAGTACTCATTACAggaacttttttt
tctatttctagcCACAAGCTTTCAAACATCAAATAACATCAACAATCTTG
TTGGTGGTAGTTGTAATTATTCTCAAGATGGAGCACATaatttgaaactc
aaaattcaTGTTTGTGATGGCTCAGATTCGTCATGCTCTGTGTGTGATAA
CGAAGCTTGTTTGTACAAAGGTAATagtgggctattccagaaaaaaaata
tactccctatgttgaggagatctATTTCAGGAAAGGTGACCCCTggattt
cttttaaatttttcaggaccccGTTGGATTTGTTTTCccattttttggac
caccctgtaTTTTCGAGCTTGTTTTACTGACtctggattttcaacctcat
tttactgacagATTTTTACACTCAAAAAGCCAGaccttcttttgattttt
ttattttccaagcCACTCTGGTCGTCACATCTCTTCAACATAAGGAGtgc
agactatttctggaatagttTCTGGAATAATTTAAAAGAAACTTTTATGG
ATATAAAAGCTGTCCGTTTTACGTTGAATCTAGACCAAAtcagttctttt
aaaaatctaagccattttttatcaaaatattcttCGTCCTTCATGGCtac
atcaatttttcaataatccTTATGTAATTGTTGTGACGAGATCGTATGTT
TTTATACCTTGTGTTGACAATAATCCACCCTTCGAATCCTTTTTCAGATT
GTGGCAAATCATGTGGCAATTGGACCAATGGGTATACTTTCAAACGTGAT
GGAGGATGTTTCAGTGTGGAGAAAAGATTATGCAATAATACTTTACTTGG
TATAACAAATCATGAAGAGCAGAGGGAGGTAGCTTTAGGTAAACCATTTT
ACTCAGATTTATTTGTTTCACCTTAACAGAGGGTTTTGACATCCTcttaa
ataaaatcttttaaggaggtgtttgaaaaaatgcaaatttttattttaac
cttTCTGGCAAGTAAAAAGGTATGGTTTAAAAACTGTTTagcattttttt
tctaaatgaaTTCCTGGGAAAGATGTAAATTAATGATACCAGCCGTGGCA
TTATTGAAAAGGTCTGCTCCTCGATTACAACATGACACAAGCTTTTTTTA
ACCACAAGTGATCAGGGGCTATGACCTACAGTGTTTCATATGGTAAAAAT
GAGCTATAATCTATTTGTCCATTTTTTACGAATAACTTTAAGGTATATAA
TTATATAAATATGTATAAATCTAAAATGTCCGAAACCCATACAAAGTGCT
CCAAGCAATAGATTTCTTTTCCAGATTGCTATGAAAATTGCACAACTTGG
GAATTGAATAACTATTTCAAGAAGAATGACTTGTGTTATGTTTCACAACT
TCGTTACTGTAACGACTCTGTCAATAAAGATTGGAATAAAGTTAATTATC
GTGAATTTAAACTAGGTATGGTTTAACTTTGATTTAAATTTAATAAAGGA
TTAAATAGAGTGccaaacttgatttttttttaattggccATGTTATTCAA
AAACATAGTGTtaaattttttgaacttttttattgttaaaactctaaaga
aaaacgttttcttttatttcagcaaaagatttttggtaaaaaacCTGATG
CTAGATGTTTAAAATTAGAtggaattcaaaaaaatttattcattttttgt
gacgtatttgtggtaaaaaatctgaaaaagttaggtaaattcaaaagctt
ttactgaaatgaaataaaagttattttttactCATAACTTTCTGGAATGG
CtgatttaaaccaaaatatataaaaactgTTAACTTGTTCAATTGCATTT
ACTTTAAAACCAATCCTAAACTTCACATTTCACAGATTGCTACACCAATT
GCACAGAGTGGGGGACTAGTAAccatttcaagaaaaataatttatgtttt
GTAACGCAAAGACGTTTTTGTAATGACACTTTCactaatcaaataaacaa
agttGAATATCATGAAATTCAGCAAGGTAAAATTAAAGTTTAGATATAAT
TAATCATGAAGATTTTGATTACTTTATCTGTTATTAACCTTTTAACCTAT
TAAAACATTATAAATTGTCTCGCAAACACGATTAAAGTCAACTGCAGGCC
TCCCAGCCGTCCTGTATTTCCTGTATTTCATGTATTCTgatattttccta
tttttttcctgttttttccTATATTTCATCAAATATTCCTGTATTTTCCT
GTATTTTCAGACCAGCTTTAGCCAAAAGTTTTAATTTAAATCAACGAAGC
CTGTCACAAATCTCTGCATCGTTACATTGGAATCTCTTTCAGTTTTAAAC
AGTTAAACTAACAGTTCACCACTCATTTACCATTAAATTTTGAACAGTCT
TTTTATAgcctttgcttgttttttagaTTACTAAAAAGAAATGACTAAAC
AAAGTATAATAAATCATGGGAGGAAAGTCATGACTGGCTAGGTCAAGTGA
AGGAGGATAAGCGCTCAGCTAGATGTAATATTTGTAataaagttttcaaa
tgtagcAATGGTGGAATTTCAGATGTtcatttgtgagtggaacaatttaa
aatcaaaaagtcttttaaaaaattctaaaaatgaagatgaaaatgaagaa
gaaaaaaatgaagatcttgtagaaaagtgctataaccaTCATTTTCACTT
aagtgaatccttaatcatcgaacgtcatcactgtgaaaaaatttctagaa
aataataattcagtcaaaagatatcaaacaaagctataagctgattgacg
tctaaaaaccctgttttctgctgttttctgctgttttttggggttaatca
cttattaactttgtatcataactttatattgaataaatatttcagtgaaa
ttttttcacactgatgacctcctaagatcaaagaatctctccagtgaaaa
tgaaagttatagcacttttatacaagatcttcatttttttcttcttcatt
ttcatcttcatttttggattttttaaaagactttttgattttaaattgtt
ccactcacaaatatctctccaacgataccaaatttatgaagattgaagaa
ttccttcaaaagttataggtaaaagagaaaagagtgcacacttatcgtga
acagactttagaagCTATCACTAAAACTAAGAACATAAACAGAGATGAAC
TAATCAGTGCTCAAACTAAAATAAGTATGGGATTGAAAAGAAAACCAGAA
CTTTCATTGGAATTGAGTGAAGTAGAGAAAAAGATGAAGACTTGAACTGT
CTGAACTCTTCTTCTCGTCgttattttgtttgtatttgCTTTTTTAGTTG
ATATTTGTTGTCAGGTTTTAGGTAAAGTAAGACTAGCGTGAATATACTCT
AGAACTGTCACATTTTATTCAGATTTGTTTGTTCTATTTTCGCCTCATTT
ACATGATGGTACTTTGATACTTATTAATATTTTTGGCTTTTTACCCGTTC
TCACTGCTTAAGATTCAGTCATTTTAGGCGTAGCTCTTTAATTgcactta
ttttttttttttttttagcctCCTTGatcttaaaaaaattgttcttataa
aaaagatcttcctcaatgaaatcatgaactCCAACCAAGTTGTTGTTAAT
ATCTTTCACTAGCtttaggctggacttaaaaaattgttggtttgccgtca
cccgaccgaccctacctcgaaacctgccgacccaaaaaaatttattgcca
ttttaaagacgatttgttttccttcaaaaacttcaaacaataaaaaatca
aaactcgtatcttgtttgtctcaagcaaaaatcgtaaattccctgctagc
gcTCTTCTgttttccattcaaaattacctaaatgtaaacaagctgttaac
ccttccatggactaaaatttcataaatcgccaaaataaaaaagaattccG
AGCGActgacccacctccaaaatctagggtcgggtgacggcaaaccaaca
attttttaagtccagccttacTATTATAGTATATTGATTTACCGATTTTT
TAGGGCTGTTTTATACATGAAAGTGCTGAGAAAGTCCTgtattttgattg
aaagaatTGGAAAATCCTGTTTTTTTGATACGATTTGTCCTGtattttcc
tgtatttttgaattttttcgtCCTGTATTCCTGTTTTATTTTACATAATT
GAGGCTGGGAGGCCTGCAACTGGATTAAacccttttttcaattttttgcc
atATATTTGGCTTCATTGCAGATTAAACTAAAGAGAAGTCGTTCTTTCAA
ATTTCAACTGTTTCTATTCAaccttttgctttttttttaaccaaaagtgA
TCAGTGATCAGGGGCTGTAACCTAAAGTGTTTCATATGGCTAAAAATGAG
CTTTTCAGAGTTGAAACATCACACTCGGGGTCAAATTAAGGGttagaaat
ctattttttcgtttttttacgAATAACTTTAAAGTTTGAGATTATTTGAA
TATGTAAAGATTTAAAAACTATAAAACCCATACAAAGTGCTCCAAGCAAT
AGATTTCTTTTCCAGATTGCTATGAAAATTGCTCAACTTGGGAATTGAAT
AACTATTTCAAGAAGAATGACTTGTGTTATGTTTCACAACTTCGTTACTG
TAACGACTCTGGCAATAAAGATTGGAATAAAGTTAATTATCGTGAATTTA
AACTAGGTATGGTTTAACTTTGGTTTAAATTTAATTAAGGATTAATTCGA
GCGccaaacttgattttttttttaattggtcAAGTTATTAAAAAACACAG
tgttaaattttttaaacttttttattgttaaaactcttaagaaaaaagtt
ttattttatttcagcAAAAGATTTTCGGTAAAAAACTATCTTTAGTGCTA
GTTGtttaaaattaaatgaaattcaaaaacatttatgCATTTTTTGTACA
TGGTGACGTTTATgttgtaaaaaatctgaaagGAGCTAGGTAAATTAAAA
AGCTTTTGCTGAAATTAAATAAAAGTTATTATTTATACTCATTACTATCT
TGAATGGCtgatttaaaccaaaatatataaaaactgTTAACTTGTTCTTG
CATTtactataaaaccaaacctaaaCTCCACATTTCACAGATTGCTACAC
AAATTGCACAGAGTGGGTGACTAGTAACcatttcaagaaaaatgatttAT
GTTTTGCAACGCAAAGACGTTTTTGTAATGACACTTTCactaatcaaata
aacaaagttGAATATCATGAAATTCAGCAAGGTAAAATTAAAGTTTAGTC
ATAACTAATCATGAATGAGCATTTTGATTGCTTTATCTATTATTAACCTT
ATTAACCTATTAAACCATTATAAATTGTCTGATAAACACGATTAAGGTCA
ACTGGATTAAACCTTCTTTTTTTTGCCATATTTTTAGCTTCATTGCAGAT
TAAACTAAAGAGAAGccgttcttttaaatttttactgtttctattcacaa
ttttatatttcaaccaccaaacctttttttttgcttgctttCAGATTGCC
CAAAAACATGTTCGGCTTGGGAACAACTCAACCTTTATCAAAAAGGAGAC
AATTGTTACAAAGACGAAATTCGTTCATGTAACATCTCAATACTGGAAAG
TTTCAACAACAAAGAATATCGCCAATCTATATTCGGTAAACTATTGGAAG
ATGATTCTCATATTTCACAACAACTGTAAAATATTTGCCTGTCTAATTTT
TGAGTCTTAATACCCTTTTAGTTTTTATTCCCTCAGTCCAGCATTGATCG
ACTTTTGAATCGCCTTATACAAACCTGTTTTAAAATTGTAGCTGTCTATT
TTTCCagctttaaattcaaaactgtCGCACCACTTCTAGATTGCGCAGAC
GTTCCATTTTAAGTCTAGGATTGAtcgatgttttgaaattttagctaCGG
CTATTCTCCTTTATTCACACCCGTTGGACCATTTTTAGATTGCAAAGACA
ATTGTACTGACTTGATAACTTCATCAACTTTCGAACGTATTGGTTCGTGT
TTTCTTTCAACAAAAAAGACATGTGTGAATGAAGtattaaatatttcaag
aaCTGAATACAATGAAACTGAAGTTGATTGTCCTACAATAGTAATTCCCA
CAGGTATAGTTTTGTTTCTTTATTCTCAGAATCTTTTTTACTTTCCAAGT
TTTAGATTAAAAGGATGTCCTTGCACTTGGCTATTTTTGTAGCAACTATA
GTTTCAAATCTATGTTTCATATTCATCCTTCTACTATATTTCAAGTAGTT
TTGTCTCATTAACAGGATAAAAAAGGATGATATATTGACCAGAATTTTGT
TTATTTCGTGTCAGTATCTTCAAAATGGCATTATTTGTATCATTATAAGG
AATAACTTCATCGTTATTTGTAattcattttcgtttttctcAGGTGCACC
AAACAAAGGGGACCCAGGTAGTGATGATGAAGAGCTTTACAAATACATGT
TGATTCCTGTGGGAGCTGTTTGTCTTATCATCGGCGTCGCTTTGGGTTGC
ATGGGTCATCGATATCAGAATGTCAAGAATCGATGCAAGAATAATAACGG
TTTGAAATTATGGATTATTATTTGCCTCATAAGCTCTAGACGAGTATCAT
TTGTCATTTGAAGTACTTCACTACTTTTGTAATTCTATAGATTAGATGAT
GTTACCCTTTAATAATACCGGATGTGTCAGAAATAAGTTACCCTGAAGTT
TCTCAAGTTGTATGACTtcttaaagaattaaaattgatcCATCAATGTTT
GAATTTACCTTTCCTCTTTACTATAGAAACATttcgattttttagaaatt
catAGAACTTGAGAAAGTTGACTttaaagagggtaacttatttctggCAC
TCCCGGCATATActtttgaaagatcaaaatgttGGTGGGTATTGGAATAA
GAGATACTGTATATTATTTTTCGTCTTGGTCAATCTTTCAATTGGCCTTT
CGGCAAACTTTCTTTCTTTATATTTCCTTATTATTCTTGAACTAATTGAT
TTCTGACCATTACATTCCAGTGTCACCAGAGATGAACCACAACAATGGAC
GCAACAGAGGTGGTGTAGCTAATCCTTCTTACACGCCAGATTCCGTCATT
ATAAACGATACCCCTGAAATGATCCGAAATGGTGGAATTTAATATGCAAC
AATGCTATTAGATGTTTAAGAGATTGTgtatctttcaaattttccctACA
ACTCatgtcaaattttgaaatactttgtAGTGCTGCATAACATGAATACT
CATATCACTCTTCAGCATCGAAGCATGATCGTGAACAACTTTGAGTTGAT
TAAATTctgatgaaattttttaaaggaCGAGTTCCTTGTGTGTTTTGGAA
ATTTATATTTCAATCTTTAACTTGAaatcttccttttctttttcttcgta
ATCTCAAATTCTAATTATTTGCACTTTAACAAACAAGACTACTGTATTTA
TTAAGATTGTTTGCAAACGTCTCCTTGACGACCTGTGTAGTCgctacttt
ttttaaatttcaaaagatttgtgACTCTAACGTGTTTCGACTAAttcttt
tctcaatttttttaaactttttcatcaTGTATATACAGGAcctattcttt
ttctttttttatattataaaatcatttttgagttatttatttctttattc
tAAGTTTTACTTGAGGTACTTTTTATACCAACACTACTAGTTGTAAAGAT
TAtcattttttaccaaaattattgtatatattattttgaatatttaaaat
ttaaaacaggTTAGACCTTGAaggttattttaaatttttgcacttttagg
taaaaaaattaCATGTGAACG

Coding sequence (CDS) from alignment at sc0000066:262586..272606+

>TCONS_00006236 ID=TCONS_00006236|Name=TCONS_00006236|organism=Clytia hemisphaerica|type=CDS|length=1572bp|location=Sequence derived from alignment at sc0000066:262586..272606+ (Clytia hemisphaerica)
ATGGGTTATCATACTTACAAATTAATAATATGTATAATATGTTTGCTATT
ATGTTTTGAATGGTGTTGTGTTGAGGGACTTGCTGTCATATGGGATCCTT
ATCACCCATTattcTCATGCAAGGATCCTGTCGTAAATGTGAAAGAAACT
GATTTGTTGAAATTTGTATGCCCAGATAAAGATATCTCGTCCAAACCAAA
TGCACATTCTTCAACCCTTCATGAAGTAGCTTATCTTCTAGACTACACAA
AAGAACAAGATTATGCAAATTGCGATGCTAGAGATCATCTATCTGTATTA
CTAAACTGTACAGCCGCATATAGAACTACACAACATCGCATCACTCAAAA
TGCTCTTTCACCTGATGCACCCTCTTTCACACCTGGAAAGACATATTATG
TGATAGcCACAAGCTTTCAAACATCAAATAACATCAACAATCTTGTTGGT
GGTAGTTGTAATTATTCTCAAGATGGAGCACATaatttgaaactcaaaat
tcaTGTTTGTGATGGCTCAGATTCGTCATGCTCTGTGTGTGATAACGAAG
CTTGTTTGTACAAAGATTGTGGCAAATCATGTGGCAATTGGACCAATGGG
TATACTTTCAAACGTGATGGAGGATGTTTCAGTGTGGAGAAAAGATTATG
CAATAATACTTTACTTGGTATAACAAATCATGAAGAGCAGAGGGAGGTAG
CTTTAGATTGCTATGAAAATTGCACAACTTGGGAATTGAATAACTATTTC
AAGAAGAATGACTTGTGTTATGTTTCACAACTTCGTTACTGTAACGACTC
TGTCAATAAAGATTGGAATAAAGTTAATTATCGTGAATTTAAACTAGATT
GCTACACAAATTGCACAGAGTGGGTGACTAGTAACcatttcaagaaaaat
gatttATGTTTTGCAACGCAAAGACGTTTTTGTAATGACACTTTCactaa
tcaaataaacaaagttGAATATCATGAAATTCAGCAAGATTGCCCAAAAA
CATGTTCGGCTTGGGAACAACTCAACCTTTATCAAAAAGGAGACAATTGT
TACAAAGACGAAATTCGTTCATGTAACATCTCAATACTGGAAAGTTTCAA
CAACAAAGAATATCGCCAATCTATATTCGATTGCAAAGACAATTGTACTG
ACTTGATAACTTCATCAACTTTCGAACGTATTGGTTCGTGTTTTCTTTCA
ACAAAAAAGACATGTGTGAATGAAGtattaaatatttcaagaaCTGAATA
CAATGAAACTGAAGTTGATTGTCCTACAATAGTAATTCCCACAGGTGCAC
CAAACAAAGGGGACCCAGGTAGTGATGATGAAGAGCTTTACAAATACATG
TTGATTCCTGTGGGAGCTGTTTGTCTTATCATCGGCGTCGCTTTGGGTTG
CATGGGTCATCGATATCAGAATGTCAAGAATCGATGCAAGAATAATAACG
TGTCACCAGAGATGAACCACAACAATGGACGCAACAGAGGTGGTGTAGCT
AATCCTTCTTACACGCCAGATTCCGTCATTATAAACGATACCCCTGAAAT
GATCCGAAATGGTGGAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003571XLOC_003571Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006236-proteinTCONS_00006236-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006236-exon-sc0000066-1491911889:262586..262766TCONS_00006236-exon-sc0000066-1491911889:262586..262766Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:262586..262766TCONS_00006236-exon-sc0000066-1510915933:262586..262766Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:262586..262766TCONS_00006236-exon-sc0000066-1575043694:262586..262766Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:263338..263499TCONS_00006236-exon-sc0000066-1491911889:263338..263499Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:263338..263499TCONS_00006236-exon-sc0000066-1510915933:263338..263499Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:263338..263499TCONS_00006236-exon-sc0000066-1575043694:263338..263499Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:263782..263954TCONS_00006236-exon-sc0000066-1491911889:263782..263954Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:263782..263954TCONS_00006236-exon-sc0000066-1510915933:263782..263954Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:263782..263954TCONS_00006236-exon-sc0000066-1575043694:263782..263954Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:264271..264393TCONS_00006236-exon-sc0000066-1491911889:264271..264393Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:264271..264393TCONS_00006236-exon-sc0000066-1510915933:264271..264393Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:264271..264393TCONS_00006236-exon-sc0000066-1575043694:264271..264393Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:264797..264955TCONS_00006236-exon-sc0000066-1491911889:264797..264955Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:264797..264955TCONS_00006236-exon-sc0000066-1510915933:264797..264955Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:264797..264955TCONS_00006236-exon-sc0000066-1575043694:264797..264955Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:265483..265623TCONS_00006236-exon-sc0000066-1491911889:265483..265623Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:265483..265623TCONS_00006236-exon-sc0000066-1510915933:265483..265623Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:265483..265623TCONS_00006236-exon-sc0000066-1575043694:265483..265623Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:266060..266200TCONS_00006236-exon-sc0000066-1491911889:266060..266200Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:266060..266200TCONS_00006236-exon-sc0000066-1510915933:266060..266200Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:266060..266200TCONS_00006236-exon-sc0000066-1575043694:266060..266200Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:269876..270016TCONS_00006236-exon-sc0000066-1491911889:269876..270016Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:269876..270016TCONS_00006236-exon-sc0000066-1510915933:269876..270016Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:269876..270016TCONS_00006236-exon-sc0000066-1575043694:269876..270016Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:270280..270420TCONS_00006236-exon-sc0000066-1491911889:270280..270420Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:270280..270420TCONS_00006236-exon-sc0000066-1510915933:270280..270420Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:270280..270420TCONS_00006236-exon-sc0000066-1575043694:270280..270420Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:270724..270888TCONS_00006236-exon-sc0000066-1491911889:270724..270888Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:270724..270888TCONS_00006236-exon-sc0000066-1510915933:270724..270888Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:270724..270888TCONS_00006236-exon-sc0000066-1575043694:270724..270888Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:271179..271334TCONS_00006236-exon-sc0000066-1491911889:271179..271334Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:271179..271334TCONS_00006236-exon-sc0000066-1510915933:271179..271334Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:271179..271334TCONS_00006236-exon-sc0000066-1575043694:271179..271334Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1491911889:271806..272606TCONS_00006236-exon-sc0000066-1491911889:271806..272606Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1510915933:271806..272606TCONS_00006236-exon-sc0000066-1510915933:271806..272606Clytia hemisphaericaexon
TCONS_00006236-exon-sc0000066-1575043694:271806..272606TCONS_00006236-exon-sc0000066-1575043694:271806..272606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:262586..272606 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.633328	0.758855	1.62203	1.19523	41.0653	26.4668	13.8297	12.8227	8.63407	7.85502	5.54986	6.40225	6.9262	5.62608	3.08455	3.10491	4.09347	5.60443	12.1828	10.4226	10.3063	8.12676	5.4709	6.71359	4.75225	7.52471	15.6986	11.4135	5.42798	5.64039
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008972Cupredoxin
IPR001799Ephrin_RBD
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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