TCONS_00006425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006425
Unique NameTCONS_00006425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006425 ID=TCONS_00006425|Name=TCONS_00006425|organism=Clytia hemisphaerica|type=transcript|length=2363bp
CTGCTGAACTTCGGTCCCATTATAGGTTGAAACCAAGCTCTTCGATGTGG
ATTTCTCACATCATAGGCTTGAATACGAATCCAAGTAATCTTTGAGGCAg
gaattttgctatttttgagtTGAACTTTTGTTCGGTAGTCTTCGTGAAGT
TTGAAATAACCTCGATGGCATGTGATGACTGGTTTTGATTTGGATTCATC
ATAAACTTCAACGGTGTACTGCCAAACAATGTGCTCAGCGATCCGCTGTT
TTTTAACACCTTTCACTTTTTGAGCTTTGGGCATTATGAAGGCTAAACCC
TCAGTAGAAGTGTCAGTGTCTGGGAAACTGTCGACTGAACAATCTGGTTT
TTGTTTAGTGTCGCCAATCTGGATGGGGTAATATTGCTGAAAGTTGTCAT
CATCGTCACGGTAGTTGAAAATATCATAAATACCTGTGTGTCCAAAGAAA
CGTCCCTCAATCATGTATTTGATCATTTGAAACTCCCCTTCATCCAGGTT
GGCAACTTGTTGAATATAATCATGTGATCCATAAACTGTCTTCTTCAACT
TCAACTCTGGATCAATCAAAGCCGTATATCTGAAAGATATAAATTCATAT
TAACATATACGTCGACTGTGTAATTCGTAGTGAAACATTGGCCCCTTCAG
CTAAAAAGAGTCGTATAAAATTTTCACTGTAAATCAAACCTTCTTTAATT
CGAAGAAAACTTTTAGCTCCATTAAGATCGAATTAGGGAAACCTCATTAC
CTATAATGTCCGTTGTTAAGTTAAGTAAGTTCAAAGACGGCTATTAGTAC
ACCATTCACTCGAAAGCTTTGATTCCTGATCTTCATATTTGATCACTCAT
TTTGTCGCTCCCGTACTGATATGCACCACCCCATATTTTCAATAACCCAT
CCGAATAGCAAGCCAAGTCGAGATTGGCTTATTTTTTCTTAGTTGGTAGT
TGGTATTTGAAATAAAAAATGTGTGAAAATTTGAAATACGGGTCGGTTAA
ACAATCGATTTTCTGGTATTGAAGAGGTGCAGGGAAGCTTACCCAAATAC
GGTTTTCTGTTCGTAAGGCATCGAGCCAAGGAAATGTAAATTATCATTTT
TCTGCTTATACTCCACAGCTTCTTCTTCACCACCTTCGTAAGAGACGAGA
TCTTTACGAAGACTTCGAAGCTCAGTCATTTGTCGGTTGTGGTCAGTCTT
CAGTTTGCTGGTCAAATGCTGACGTGGTTCACTTCTAGTAGATTTTGTAG
CAACCGTCCCCGCATCTAAAGAAATAGAAGAccagagtctacttttggct
gaactttgctttttgataaaagaatgagtccagtgaagtagactaggagt
gtttggcgaggtcgccattttgagagaaaatgttaaaaatccaaaaacta
aAATcttaagcaaaagcatattaccatatactaccagGCCACTTAATCGC
ACCATCCattctatcaaaaagctttaactTAAGTGGAACCCGGGctaaag
aaatagaagaaatgATGAGCGACTGGTTTAAGCTACAATATTTACGAAAC
AAAGATTACTCCTAGTTGGAATTCCTCCTCCTCATTCGATGGATGAGCAA
GCTTTCCTCTGACCATGCGTAAACAAAAGACTGTCTGGTAACTTTTGGAA
TATTTATattaattgaaattttgcaagtgtGCACTTATCATTGATGACGT
AATCAATATTTGAAAATGCTGAGGAAAAGGACCccttttttcactttatt
ttttttttgctaaagttTTGTGACATGTATTTTTGAGACAGCGGATCAAT
TCTTTGCACTTTCTAGTATcgtatattttacagaccaaccAAAAATTGCC
CATGTCCCTAAATGAGCCCTAAGTTACTGTATTAAGGGATTGGAAAATGC
TATTGACATGAACTTTTGATAAATCTTATGTACTGATGAAGCTTGCAgtc
aaatttcagcaaaatcagaCCAGCGGTTACCTTAAGTGAAGTAATTTTTT
CGCGGTAGACAATTAAAAACGAAGAAATTaattccgcgaaaataagttct
gcgaaaattagttccctttagGTATGCTAAAATAAAACACTTACTTCGAT
CGACAACCACTGTTTCTCGGACATACATAGCATCGTTAGCGGACAGTATT
TGCATATAACTTCCGTATCTCAAGGAAGTCTCCACAAGGAATTCACCGAA
CTCCAAAGGGTATGTATCAAACCAATGAACATAATTGTTGGGCGTTCCTT
CTTTGTCATGTAGGAAGCCGTTACCGCCTTTCCAGGGGTCATCCTTACCT
TCATCCAAGGGAGATGCTGAATAATAATATCTAAGTAAGAGATAATGGGA
AATTCAAGTCATT
Run BLAST on NCBI

transcript from alignment at sc0000067:364658..368470+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006425 ID=TCONS_00006425|Name=TCONS_00006425|organism=Clytia hemisphaerica|type=transcript|length=3813bp|location=Sequence derived from alignment at sc0000067:364658..368470+ (Clytia hemisphaerica)
CTGCTGAACTTCGGTCCCATTATAGGTTGAAACCAAGCTCTTCGATGTGG
ATTTCTCACATCATAGGCTTGAATACGAATCCAAGTAATCTTTGAGGCAg
gaattttgctatttttgagtTGAACTTTTGTTCGGTAGTCTTCGTGAAGT
TTGAAATAACCTCGATGGCATGTGATGACTGGTTTTGATTTGGATTCATC
ATAAACTTCAACGGTGTACTGCCAAACAATGTGCTCAGCGATCCGCTGTT
TTTTAACACCTTTCACTTTTTGAGCTTTGGGCATTATGAAGGCTAAACCC
TCAGTAGAAGTGTCAGTGTCTGGGAAACTGTCGACTGAACAATCTGGTTT
TTGTTTAGTGTCGCCAATCTGGATGGGGTAATATTGCTGAAAGTTGTCAT
CATCGTCACGGTAGTTGAAAATATCATAAATACCTGGATAATTGAGAAGG
ACAAGAATTTattatgctgaaaaatattgtttgtttAATGATTTGTCTAT
GGTGATCTTTTTACCCTGGTTAGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgctcgacgacggtaaaaaac
accaaaataccgtcgtctgtttaggtgagcaaaggcgatatagagccgta
catcaactatcgactttgttttgtatcatttcgcttaccgtcgccctcga
tatcttccgatacataaactcggtaatgttCTAAATGGTTGCCCGTTGAA
ATAAAAGATAGCACAAAACGGGCTTTTCAACTTCAACGAGCTTCATTCTA
AAGGCCTTCAATGCAAGAAGTTTAAGGGAAAATGACTTTATAGCTAAAAT
CAGGAAACTTCAAACATCTGAACAATAAAAGCACCAAAGGACAAtaagtt
catttttttttcctcacttttcatcttcattttcgaaaatttaatcTAAT
CTATAAGTTATTTTTCCCAGAAATGATACTGCTCTGAATTATATTTTCAA
CGGTATATAAATGTTAGGCGGTGCGCAGTAGTACAGTAGTTCACACTTAA
TGCGAAAGGACGTTGATGATGATGTTTACATACCTGTGTGTCCAAAGAAA
CGTCCCTCAATCATGTATTTGATCATTTGAAACTCCCCTTCATCCAGGTT
GGCAACTTGTTGAATATAATCATGTGATCCATAAACTGTCTTCTTCAACT
TCAACTCTGGATCAATCAAAGCCGTATATCTGAAAGATATAAATTCATAT
TAACATATACGTCGACTGTGTAATTCGTAGTGAAACATTGGCCCCTTCAG
CTAAAAAGAGTCGTATAAAATTTTCACTGTAAATCAAACCTTCTTTAATT
CGAAGAAAACTTTTAGCTCCATTAAGATCGAATTAGGGAAACCTCATTAC
CTATAATGTCCGTTGTTAAGTTAAGTAAGTTCAAAGACGGCTATTAGTAC
ACCATTCACTCGAAAGCTTTGATTCCTGATCTTCATATTTGATCACTCAT
TTTGTCGCTCCCGTACTGATATGCACCACCCCATATTTTCAATAACCCAT
CCGAATAGCAAGCCAAGTCGAGATTGGCTTATTTTTTCTTAGTTGGTAGT
TGGTATTTGAAATAAAAAATGTGTGAAAATTTGAAATACGGGTCGGTTAA
ACAATCGATTTTCTGGTATTGAAGAGGTGCAGGGAAGCTTACCCAAATAC
GGTTTTCTGTTCGTAAGGCATCGAGCCAAGGAAATGTAAATTATCATTTT
TCTGCTTATACTCCACAGCTTCTTCTTCACCACCTTCGTAAGAGACGAGA
TCTTTACGAAGACTTCGAAGCTCAGTCATTTGTCGGTTGTGGTCAGTCTT
CAGTTTGCTGGTCAAATGCTGACGTGGTTCACTTCTAGTAGATTTTGTAG
CAACCGTCCCCGCATCTAAAGAAATAGAAGAccagagtctacttttggct
gaactttgctttttgataaaagaatgagtccagtgaagtagactaggagt
gtttggcgaggtcgccattttgagagaaaatgttaaaaatccaaaaacta
aAATcttaagcaaaagcatattaccatatactaccagGCCACTTAATCGC
ACCATCCattctatcaaaaagctttaactTAAGTGGAACCCGGGctaaag
aaatagaagaaatgATGAGCGACTGGTTTAAGCTACAATATTTACGAAAC
AAAGATTACTCCTAGTTGGAATTCCTCCTCCTCATTCGATGGATGAGCAA
GCTTTCCTCTGACCATGCGTAAACAAAAGACTGTCTGGTAACTTTTGGAA
TATTTATattaattgaaattttgcaagtgtGCACTTATCATTGATGACGT
AATCAATATTTGAAAATGCTGAGGAAAAGGACCccttttttcactttatt
ttttttttgctaaagttTTGTGACATGTATTTTTGAGACAGCGGATCAAT
TCTTTGCACTTTCTAGTATcgtatattttacagaccaaccAAAAATTGCC
CATGTCCCTAAATGAGCCCTAAGTTACTGTATTAAGGGATTGGAAAATGC
TATTGACATGAACTTTTGATAAATCTTATGTACTGATGAAGCTTGCAgtc
aaatttcagcaaaatcagaCCAGCGGTTACCTTAAGTGAAGTAATTTTTT
CGCGGTAGACAATTAAAAACGAAGAAATTaattccgcgaaaataagttct
gcgaaaattagttccctttagGTATGCTAAAATAAAACACTTACTTCGAT
CGACAACCACTGTTTCTCGGACATACATAGCATCGTTAGCGGACAGTATT
TGCATATAACTTCCGTATCTCAAGGAAGTCTCCACAAGGAATTCACCGAA
CTCCAAAGGGTATGTATCAAACCAATGAACATAATTGTTGGGCGTTCCTT
CTTTGTCATGTAGGAAGCCGTTACCGCCTTTCCAGGGGTCATCCTTACCT
TCATCCAAGGGAGATGCTGAATAATAATATCTAAGTAAGAGATAATGGGA
AATTCAAGTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003664XLOC_003664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006425-exon-sc0000067-1491911889:364658..365086TCONS_00006425-exon-sc0000067-1491911889:364658..365086Clytia hemisphaericaexon
TCONS_00006425-exon-sc0000067-1510915933:364658..365086TCONS_00006425-exon-sc0000067-1510915933:364658..365086Clytia hemisphaericaexon
TCONS_00006425-exon-sc0000067-1575043694:364658..365086TCONS_00006425-exon-sc0000067-1575043694:364658..365086Clytia hemisphaericaexon
TCONS_00006425-exon-sc0000067-1491911889:366537..368470TCONS_00006425-exon-sc0000067-1491911889:366537..368470Clytia hemisphaericaexon
TCONS_00006425-exon-sc0000067-1510915933:366537..368470TCONS_00006425-exon-sc0000067-1510915933:366537..368470Clytia hemisphaericaexon
TCONS_00006425-exon-sc0000067-1575043694:366537..368470TCONS_00006425-exon-sc0000067-1575043694:366537..368470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:364658..368470 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.860488	0.994219	1.1448	1.0801	0.689158	0.280366	0.344376	0.515198	0.450668	0.202562	0.907952	1.8458	4.29896	3.88558	35.244	37.1832	3.3834	2.3036	2.20821	2.5922	0.168067	0.310797	0.389635	0.474075	0.496149	0.643764	0.155365	0.0620173	0.201881	0.275569
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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