TCONS_00006609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006609
Unique NameTCONS_00006609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006609 ID=TCONS_00006609|Name=TCONS_00006609|organism=Clytia hemisphaerica|type=transcript|length=698bp
AAACGTAAGGCCGTTTTATAAAACTGATATTATAAGAGTACAGAGTTGAT
ACCATAGGCCTGGCtttcattgcattaattttGATGTGAAAATCTTGTTT
CGTTGAATAATGAAGAAAATGATGGATGTACCACCACCATACCTCTTTCT
AATGTTGAATTGGTCGATTTTGGTTGTTTTACGCTGGGCCGGTGATCGTA
ATTATTATTATAGTGATTTAACACCAATCGATGGTGAAGCAGCCATTACT
ATGCTTGGTAATATTACCCTGTGGATGTTCAACATTGTATTTATCTTCAT
GAACATTACTGAAATCGCCAACAGATTAAGAGGAGGAGATGTTAATATCC
ACAAAATTATGATGGTGATATGTTGTGTTTGCAGTCTTCCCATCTTCATT
GCAAGTGTTATGGGAATGAATTACCTTAGCAAGCCGCATTTTGATCGGTA
TGAAGTGGGAAGGTGGAGTCGCGTGgtactttcttcttttttttattcct
tGATGAAATAAAAACTCGTATCAACTACACTAAGAATTCAAACAAAAAAA
CTGTGAAAGTATTGCGTGTTTGTATCTTAAAGTTTTCAATCTTTCAATTC
TTTATTCTAAATGATGATTCAGTGAGGTAaccataccttatcggggaaaa
aatgtcgggtgAACGTTACGAAAATATTGAGggttgacgaaattttcc
Run BLAST on NCBI

protein sequence of TCONS_00006609-protein

>TCONS_00006609-protein ID=TCONS_00006609-protein|Name=TCONS_00006609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MKKMMDVPPPYLFLMLNWSILVVLRWAGDRNYYYSDLTPIDGEAAITMLG
NITLWMFNIVFIFMNITEIANRLRGGDVNIHKIMMVICCVCSLPIFIASV
MGMNYLSKPHFDRYEVGRWSRVVLSSFFYSLMK
Run BLAST on NCBI

transcript from alignment at sc0000069:101598..105839-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006609 ID=TCONS_00006609|Name=TCONS_00006609|organism=Clytia hemisphaerica|type=transcript|length=4242bp|location=Sequence derived from alignment at sc0000069:101598..105839- (Clytia hemisphaerica)
AAACGTAAGGCCGTTTTATAAAACTGATATTATAAGAGTACAGAGTTGAT
ACCATAGGCCTGGCTTTCATTGCATTAATTTTGATGTGAAAATCTTGTTT
CGTTGAATAATGAAGAAAATGATGGATGTACCACCACCATACGTAATTGT
TGGAAAAACTGACGAAGAAGATAAAAATTGTGAAGAACAAAAAATCCAAC
ACCTTACATTGTGTTCAAAAATAAAGATTATCTTTTTCGTTCAACTTCCA
TTTTTATTGGGGTTAACACCGTAAGTTCTCGTTCTTTAAAGTTTTCAATT
CAAAGTTGGATGGATATCCAGTAGCCGATGAAAATCCGACGCTGCTGTTT
AACTTAAGGCACATAGTTCNCTTTAAAGTTTTCAATTCAAAGTTGGATGG
ATATCCAGTAGCCGATGAAAATCCGACGCTGCTGTTTAACTTAAGGCACA
TAGTTCGGGGGAAGGTATTAACCTTAGGGTTATACTACCCTTGCCGACCG
ACGGGGGTGCTCTGCTGAGGTTCAGAAAATGGACCCTACGTGGGGCTCGT
TTTTTCAAAAATTTTGCCGAAATTTGCGAAAAAAGTGACCCTGAATGGGA
CGGAAATTCCAAAATTTTCTACTTTTTCCAAAAAAGGCACCCTACGAGGG
ACTGATTTTTCTATTTTGGCGTTTCTGCGACCCTAACTGGGACTCGTGGA
GGTTAAAAAAGGTACCATGACCAGCGGCGCATCCCCGTAACCCATTTTGC
CCTAGTACCCCCCCCCGGAGTATTGAAAGTCACATGATACAATAAATAAC
CTCATGCACCAAATAAAGTAGTTTACGCAATAGATATCACACGGTACCGG
CGAGTATCCCATATTGTACGAGTCTTGACGAGTAAAATTGTGATAACTGC
CCGGGGGGAGGGGGGACTTTGGGAAAAAAGGGGGGGGGGGGGGGACTTAG
GCAAAAATGGATGATGGGTATGTGCGGACGGTAAGGGTCGGTTTTTTCAC
CTTTCAAAGTCTCTCTAAGGGTTGGGAAAATCAGAAAATTTTAAATTAGT
CTCTCTAAGGGTCGGAAAATTCAGGATTTTTAAGAAATTTTTTGATTTCC
AGAGAAAAAATTGTAATAAAGTCTCTCTAAGGGTATGACTTTTTTCAAAA
ATCGAAAAAAATAATTCAAAAAGTCTCTGTAAGGGTCACCTTTTCAGCAA
AAATCAGTCTCTCTAAGGGTCGGTTTTCGGAGGTCCCGTCCGCACATACC
CCTCATTCGCCAACCCTAACACCCCGGTGATAACTGGTTTATCGTCAACT
TGTAAATATCACTAACTTTTCTCTCTCCATTTGTGTCGTTTTCTATGTTT
TGTTTTGCTGTTGTGATTTTCTCTCTCCTCTATTTTAATAAAAACAACAT
TAAAAAATTCGAAAAAATCGAACAGTCATTAAATCATGGATCAAGTTTGA
ATCAAGTGTACAAAATATGATATCTCGCTTACCAGACCCCTTTTTGAACG
CAGTCTTGTATTTGTACGGTACAATATGAAATCATTATGTACGCGTTTTT
AGCCAATCAGATTGCTCATATTTTTCATGTTGACGATAAATGCAATAAAA
CAATTTTGTTGCATGGGTTTATCAAGGCTACATTACAAGGTTACATTCAG
TGCATAACTTTTGATATGAGAATAAGTCGAAGAAGTAGTTTTTGGATGCT
TATGCATCGGTTTATCTACCGGGTGTTTTGGTTCTCATCAACAAAATTTG
TGAATCTTCAATACGCTAAGGTAATCCATTTTTCTTTTTACCAGCTCTTT
CTAATGTTGAATTGGTCGATTTTGGTTGTTTTACGCTGGGCCGGTGATCG
TAATTATTATTATAGTGATTTAACACCAATCGATGGTGAAGCAGCCATTA
CTATGCTTGGTAATATTACCCTGTGGATGTTCAACATTGTATTTATCTTC
ATGAACATTACTGAAATCGCCAACAGATTAAGAGGAGGAGATGTTAATAT
CCACAAAATTGTGAGTATTTATGATATGCACCACTGCAATGACTTCACAA
AATTATGCAAAAAACTTTTCTGTTTTTTCCCCCCCCCAATACGTCACTTT
TTCTATTGTTTAAGTGACGTATTGGGTGGAAAATTCTAAAAGTTCTCAGA
AGACTCTCCAGTGGTGCATATCATAAATAGTGCTGTCTCAATCTCAATAT
AATCTGCAGGGGAGACACAAACATTTGATAGAATTCGAATAAGATAGCGG
TTTTGTGCTTTTTGAAAAGATATTCGGGAGCGGAAAATTATCCGAAAAGA
AAAAATGAAGAGACAGGTATTAAGATAGAACTTAGAAAACTGTCACAGCT
ATTATAACATCATTCCAAATGCGAGTTTCCAATATAAATTTTGAGAAATA
CTTAAAACAACATCTTGGTATAAGTCACTCCTTAGTTGGCTACCACTTGT
TGGCTTAGCTATAACGCTAGCAGGTTGTGAGGGTGTTTTGGCTGTTAACC
GTTGAAAAGCATCTCTAAATATTGTTTTTTAAAAAGCAGTTCAAATCAAC
TATTACCGACTACTGTAGCTGAGCACCTGTTTGGTAAACTTAAGACTTTT
TAGCAGCCGTAGCATGAAGGTAGAGCATCCAGCTACGGTGCGCAATTTTG
TGGGTTTAATCCCCAGCCGGGTCATACCAAAGCTTCCCAAAATGGTACTT
GATGCCTCTCTGCTTGATGCCTCTCTGCTTGATGCTCAGTAACTAAAGAG
ACGGATCAAGGGTAAGTGGAGAAATCCAGAGAAAGGAGTGGCGCCTCCCC
TACCTTCGGGTAGACAGCTATACGAAAAGGGAGCCTTCGGGTCGCCCTCG
AATGCGGTCGCAAACTTACTTACTTACTAAGACTTTTTAAGGGCTTATCA
CCAAAGAACAAAGAGACTTTTCTCTATTCTTTACAAGAAACAATTTGCAA
GTGTTTTTATTTTTCATTCATTATAGATGATGGTGATATGTTGTGTTTGC
AGTCTTCCCATCTTCATTGCAAGTGTTATGGGAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCCCCCCAGCGGAGCTTTTTTGAAGGGGCGCCGAAGAGCA
AGGGGCGCCAAAAGAAATGTTTTTAAAAGCCGCAATCTTAAAAATCATAC
TTTATGCGCCTTAAATTGCGCCCCGGACCAACTTTACTGAGATAATTTTA
GAATACTTGCAATTTTTTTCGCTCGCTTCGCTCGCAATGTAGTTTAATTG
GTAACTTCTTTGCAATCTAGCTAATTTATAAGTTTTTTTGTGTACAATAT
AGCATTATTAAATGAAAATCTAACTGCACCCCAAGACCAATTTGTTGACA
ACAATATTGAAATCATAGAACATCAATTTTTTCGCTCGCTTCCCTCGCAT
TTCACATTGTTTCTTTAAGTCTCTTTTCACTCTAGCAAGTGTCAAATTTG
TCTATTTTTATTTACTGATTTAGGGTGTCTTGACAGTCAATTTTTAAAAT
TTTTTCTAGTCGGCCCCAACCATGGTGGGGCCTGCTTTTCCATTCATCAA
AGATATATCTACTCTTCTCCACTAAATATTTCCTTCCTCGTTATGTCTAG
GCAAATGAATTAGTAAAGGTTAGAAACTGGTTAGTGGGGGCACCACTTTG
GAAAATTGAAGGGGGCGCCATTTAAAAAAAATTGACTTTGGCCCCTCCAG
AAAAATTTTCCCACAACGCCACTGNAGTGTTTTTATTTTTCATTCATTAT
AGATGATGGTGATATGTTGTGTTTGCAGTCTTCCCATCTTCATTGCAAGT
GTTATGGGAATGAATTACCTTAGCAAGCCGCATTTTGATCGGTATGAAGT
GGGAAGGTGGAGTCGCGTGGTACTTTCTTCTTTTTTTTATTCCTTGATGA
AATAAAAACTCGTATCAACTACACTAAGAATTCAAACAAAAAAACTGTGA
AAGTATTGCGTGTTTGTATCTTAAAGTTTTCAATCTTTCAATTCTTTATT
CTAAATGATGATTCAGTGAGGTAACCATACCTTATCGGGGAAAAAATGTC
GGGTGAACGTTACGAAAATATTGAGGGTTGACGAAATTTTCC

Coding sequence (CDS) from alignment at sc0000069:101598..105839-

>TCONS_00006609 ID=TCONS_00006609|Name=TCONS_00006609|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0000069:101598..105839- (Clytia hemisphaerica)
ATGAAGAAAATGATGGATGTACCACCACCATACCTCTTTCTAATGTTGAA
TTGGTCGATTTTGGTTGTTTTACGCTGGGCCGGTGATCGTAATTATTATT
ATAGTGATTTAACACCAATCGATGGTGAAGCAGCCATTACTATGCTTGGT
AATATTACCCTGTGGATGTTCAACATTGTATTTATCTTCATGAACATTAC
TGAAATCGCCAACAGATTAAGAGGAGGAGATGTTAATATCCACAAAATTA
TGATGGTGATATGTTGTGTTTGCAGTCTTCCCATCTTCATTGCAAGTGTT
ATGGGAATGAATTACCTTAGCAAGCCGCATTTTGATCGGTATGAAGTGGG
AAGGTGGAGTCGCGTGGTACTTTCTTCTTTTTTTTATTCCTTGATGAAAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003733XLOC_003733Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006609-proteinTCONS_00006609-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006609-exon-sc0000069-1575043694:105698..105839TCONS_00006609-exon-sc0000069-1575043694:105698..105839Clytia hemisphaericaexon
TCONS_00006609-exon-sc0000069-1575043694:103830..104045TCONS_00006609-exon-sc0000069-1575043694:103830..104045Clytia hemisphaericaexon
TCONS_00006609-exon-sc0000069-1575043694:101598..101937TCONS_00006609-exon-sc0000069-1575043694:101598..101937Clytia hemisphaericaexon
TCONS_00006609-exon-sc0000069-1510915933:105698..105839TCONS_00006609-exon-sc0000069-1510915933:105698..105839Clytia hemisphaericaexon
TCONS_00006609-exon-sc0000069-1510915933:103830..104045TCONS_00006609-exon-sc0000069-1510915933:103830..104045Clytia hemisphaericaexon
TCONS_00006609-exon-sc0000069-1510915933:101598..101937TCONS_00006609-exon-sc0000069-1510915933:101598..101937Clytia hemisphaericaexon
TCONS_00006609-exon-sc0000069-1491911889:105698..105839TCONS_00006609-exon-sc0000069-1491911889:105698..105839Clytia hemisphaericaexon
TCONS_00006609-exon-sc0000069-1491911889:103830..104045TCONS_00006609-exon-sc0000069-1491911889:103830..104045Clytia hemisphaericaexon
TCONS_00006609-exon-sc0000069-1491911889:101598..101937TCONS_00006609-exon-sc0000069-1491911889:101598..101937Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:101598..105839 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0725516	0	0	0	0	0	0	0.153229	0	0	0.367523	0	3.11373	10.7001	1.75079	2.28043	0.738022	0.317184	3.50976	0.972574	0	0.102646	0.0831863	0	0	0.183758	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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