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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006802 ID=TCONS_00006802|Name=TCONS_00006802|organism=Clytia hemisphaerica|type=transcript|length=2472bpRun BLAST on NCBI protein sequence of TCONS_00006802-protein >TCONS_00006802-protein ID=TCONS_00006802-protein|Name=TCONS_00006802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp MMDPTVYESLLTNENTKSVLKKHDNKGTEDYTINDYRKKCSQLELRLAEERun BLAST on NCBI transcript from alignment at sc0000070:583314..609267- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006802 ID=TCONS_00006802|Name=TCONS_00006802|organism=Clytia hemisphaerica|type=transcript|length=25954bp|location=Sequence derived from alignment at sc0000070:583314..609267- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000070:583314..609267- >TCONS_00006802 ID=TCONS_00006802|Name=TCONS_00006802|organism=Clytia hemisphaerica|type=CDS|length=48840bp|location=Sequence derived from alignment at sc0000070:583314..609267- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006802 vs. Swiss-Prot (Human)
Match: CC171 (Coiled-coil domain-containing protein 171 OS=Homo sapiens GN=CCDC171 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.804e-23 Identity = 191/808 (23.64%), Postives = 368/808 (45.54%), Query Frame = 2
Query: 179 SSNYNLEIGKLHEKISKIQSSFEKNELIRQKLEYELTVSQQETNKEKR-------------------------KRAEDQKNFKYEIEQLQVHITXXXXXXXXXXXXXXXVKQEYELRLVKDEENLKK---------------VEGSVRQVKKENEVIYQEKLAAE----QLII-----VWKNKHEEVLEKCQVIEKQFQDQSFTIQKLLKEGEYAITLESELVGKMKHLQDHIQNVEENIQAERAAHLETKFNTEVVQLKLKETESILEMEKAKLIESRQSLENADKKFRELEGAFHKERDNLNQYKLKFDKTKEELHLHKTQIAAKDKHLDGITAEVK----------NYNQ-HVSEVVEELDKTKETLVKIEKEKKKAYREVEYLMNNYKLVSDIVISPVKGCDAELSFLDIVHKLRQMMERFQDNVMDIQNKHKETLLMLDKLEQECSVHREVAWNKDRALEEAERLVKNAQNNLSKCQVKCASYEERINRLLKEDQNHKQIMDGKDTQILELKQQTCKTTFEVDQIYQVHMRNMQSIYD------LLMRNPSSEESRINQGIFTVDELKDMI----------VNRINENSECLQVLSQKYQTLCEELEKNKEDLHHHKSGIKRLQKLNAQVLS----QTEKSLTESQQISEKEKQKHQDEILVLKSRLKVXXXXXXXXXMKFQDVPVDQLSTILQRLDSYEQINYLN--NLLSGVLWGILYQYHALVYQKKLINHMLQGVGLFKNEIIDIAQSLEEAITGRRNEKLVRRIPRNGIFK-FRRYTIVVLAVNRLLKIKFSKTCCIL 2353
++ +N E+ +I+K++S EK E +RQ LEY+L V+++E +R K E +K F+ ++ + + LE ++ + +EY+L L+K++ L+K +E +R+ E + +E+ AE Q I+ +N H++V + +E + D S +++ E E++ E L + + ++ +EENI+AERAAHLE+KFN+E++QL++++ E L++EKA E+ LE +F+E+E A+ +E+ N + F K L+L + + +K+K L+ E K YN+ SE+ EEL K+ + + + +E+E +++++ + K D SF ++ +LR+ + +Q+ + D N+ K LD +Q+ H + ++E + + + LS KCA E I+ L E QN + + Q + + + K + + + + + ++Y +L++ P E +++ F+ EL ++ +NR NE L+ + + EL++ +ED + K +++ AQ + E L S+ E +K+ + + + K+ K+ H E H + ++ +L + QR EQ++ L L++G L+ + + AL Q+ + + LFK EI +AQ+L ++ E +++ G+ + FR+ I VLA NR LKI ++C L
Sbjct: 53 TTKHNAELASYESQIAKLRSEVEKGEALRQSLEYDLAVARKEAGLGRRAAEERLAEAHRIQEKLCAQNSELQAKTNETEKAFQTSQQKWKEECRRFEHDLEERDNMIQNCNREYDL-LMKEKSRLEKTLQEALEKHQREKNEMESHIRETALEEFRLQEEQWEAERRELQFIVQEQDTAVQNMHKKV----EKLETEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEIIKNEFKEVESAYEREKHNAQE---SFAK----LNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKRLQYNEKSCSELQEELVMAKKHQAFLVETCENNVKELESILDSFTVSGQWTSGIHKDKDKPPSFSVVLERLRRTLTDYQNKLEDASNEEK-ACNELDSTKQKIDSH-------TKNIKELQDKLADVNKELSHLHTKCADREALISTLKVELQNVLHCWEKEKAQAAQSESELQKLSQAFHKDAEEKLTFLHTLYQHLVAGCVLIKQP---EGMLDK--FSWSELCAVLQENVDALIADLNRANEKIRHLEYICKNKSDTMRELQQTQED-----TFTKVAEQIKAQESCWHRQKKELELQYSELFLEVQKRAQKFQEIAEKNMEKLNHIEKSHEQLVLENSHFKKLLSQTQR----EQMSLLAACALMAGALYPLYSRSCALSTQRDFLQEQVNTFELFKLEIRTLAQALSTVEEKKQEEAKMKKKTFKGLIRIFRKGVIAVLAANR-LKI-LGQSCASL 824 The following BLAST results are available for this feature:
BLAST of TCONS_00006802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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