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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006824 ID=TCONS_00006824|Name=TCONS_00006824|organism=Clytia hemisphaerica|type=transcript|length=737bp
AAATACGGATCATTGAGTCTGAGGCACCTGATGCTAAGGCGGCTGAAGCT
CCACCTATACGGAAACTGTGTGTATTGATGTCCCTAATAGTAGGGAGGGC
TGTAATCAAAAGCTTGCGAATTGCATTTCTGGTTAAAAAATTACCGTTGG
AGAACTGAAAAAGGGGTCCAGAATAGCTCGGGGAGAGGGCAAGGTAGTTT
CGCATGGCACCAACCGGGCAAAGGGCATCAAAGGTGGCTGCAATACGTAT
GGTTGTTCCCATTCGGAAGGGGTCAGTTTTGCTTGCTTTGATACGTATTG
TCATAATGGAGAAGCTGGGATTAAACTGAACGTCAGAACGTGACAGGTGT
ATGCTGCTGTTGAATTTGGAACAACTGGGGCATGTGTATTCAGAGACTCT
CAGTAACCCAAAGAACGCCACTACACAAGATGTCAAGAGCATGTATTTAT
CAACTGTCGTGAAACAAGAGGTgtgcaaaaaaattgatatctgTTGGAGA
TAATTGATGGTGATAGGTTTCCTAACGGCTCTGGTAAGTGTGTTGCCTTG
TCGTCGTTTCATGCCCCTGATCAACCGTTGTAGAATGGTCATTTCGTGAA
GATTCAACTGATAGCCAAGCATAGAATTTTGATGGAGGACGCCGTGTATG
TAGACCTTGATGGTTTTGTGAGAGATACCTCTGTTTGCAGAGAAAACAGC
AAAGAAGCAAAGTGAAGATTGGCTGGCAGGAAAGTGG Run BLAST on NCBI protein sequence of TCONS_00006824-protein >TCONS_00006824-protein ID=TCONS_00006824-protein|Name=TCONS_00006824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
HFPASQSSLCFFAVFSANRGISHKTIKVYIHGVLHQNSMLGYQLNLHEMT
ILQRLIRGMKRRQGNTLTRAVRKPITINYLQQISIFLHTSCFTTVDKYML
LTSCVVAFFGLLRVSEYTCPSCSKFNSSIHLSRSDVQFNPSFSIMTIRIK
ASKTDPFRMGTTIRIAATFDALCPVGAMRNYLALSPSYSGPLFQFSNGNF
LTRNAIRKLLITALPTIRDINTHSFRIGGASAALASGASDSMIRI Run BLAST on NCBI transcript from alignment at sc0000070:378646..379382 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006824 ID=TCONS_00006824|Name=TCONS_00006824|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at sc0000070:378646..379382 (Clytia hemisphaerica)
CCACTTTCCTGCCAGCCAATCTTCACTTTGCTTCTTTGCTGTTTTCTCTG
CAAACAGAGGTATCTCTCACAAAACCATCAAGGTCTACATACACGGCGTC
CTCCATCAAAATTCTATGCTTGGCTATCAGTTGAATCTTCACGAAATGAC
CATTCTACAACGGTTGATCAGGGGCATGAAACGACGACAAGGCAACACAC
TTACCAGAGCCGTTAGGAAACCTATCACCATCAATTATCTCCAAcagata
tcaatttttttgcacACCTCTTGTTTCACGACAGTTGATAAATACATGCT
CTTGACATCTTGTGTAGTGGCGTTCTTTGGGTTACTGAGAGTCTCTGAAT
ACACATGCCCCAGTTGTTCCAAATTCAACAGCAGCATACACCTGTCACGT
TCTGACGTTCAGTTTAATCCCAGCTTCTCCATTATGACAATACGTATCAA
AGCAAGCAAAACTGACCCCTTCCGAATGGGAACAACCATACGTATTGCAG
CCACCTTTGATGCCCTTTGCCCGGTTGGTGCCATGCGAAACTACCTTGCC
CTCTCCCCGAGCTATTCTGGACCCCTTTTTCAGTTCTCCAACGGTAATTT
TTTAACCAGAAATGCAATTCGCAAGCTTTTGATTACAGCCCTCCCTACTA
TTAGGGACATCAATACACACAGTTTCCGTATAGGTGGAGCTTCAGCCGCC
TTAGCATCAGGTGCCTCAGACTCAATGATCCGTATTT Coding sequence (CDS) from alignment at sc0000070:378646..379382 >TCONS_00006824 ID=TCONS_00006824|Name=TCONS_00006824|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0000070:378646..379382 (Clytia hemisphaerica)
CACTTTCCTGCCAGCCAATCTTCACTTTGCTTCTTTGCTGTTTTCTCTGC
AAACAGAGGTATCTCTCACAAAACCATCAAGGTCTACATACACGGCGTCC
TCCATCAAAATTCTATGCTTGGCTATCAGTTGAATCTTCACGAAATGACC
ATTCTACAACGGTTGATCAGGGGCATGAAACGACGACAAGGCAACACACT
TACCAGAGCCGTTAGGAAACCTATCACCATCAATTATCTCCAAcagatat
caatttttttgcacACCTCTTGTTTCACGACAGTTGATAAATACATGCTC
TTGACATCTTGTGTAGTGGCGTTCTTTGGGTTACTGAGAGTCTCTGAATA
CACATGCCCCAGTTGTTCCAAATTCAACAGCAGCATACACCTGTCACGTT
CTGACGTTCAGTTTAATCCCAGCTTCTCCATTATGACAATACGTATCAAA
GCAAGCAAAACTGACCCCTTCCGAATGGGAACAACCATACGTATTGCAGC
CACCTTTGATGCCCTTTGCCCGGTTGGTGCCATGCGAAACTACCTTGCCC
TCTCCCCGAGCTATTCTGGACCCCTTTTTCAGTTCTCCAACGGTAATTTT
TTAACCAGAAATGCAATTCGCAAGCTTTTGATTACAGCCCTCCCTACTAT
TAGGGACATCAATACACACAGTTTCCGTATAGGTGGAGCTTCAGCCGCCT
TAGCATCAGGTGCCTCAGACTCAATGATCCGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006824-exon-sc0000070-1491911889:378646..379382 | TCONS_00006824-exon-sc0000070-1491911889:378646..379382 | Clytia hemisphaerica | exon |
| TCONS_00006824-exon-sc0000070-1510915933:378646..379382 | TCONS_00006824-exon-sc0000070-1510915933:378646..379382 | Clytia hemisphaerica | exon |
| TCONS_00006824-exon-sc0000070-1575043694:378646..379382 | TCONS_00006824-exon-sc0000070-1575043694:378646..379382 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:378646..379382 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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