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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006934 ID=TCONS_00006934|Name=TCONS_00006934|organism=Clytia hemisphaerica|type=transcript|length=1705bp
TTTATACTGCTTTCTGCTGTGATATTTGTCTATCGTTGTTTCTTTATGTA
TCTTTTCAGTGatcagaaaattaaataaatataaggaaaaaaaatacatt
taaccCAAACTCACTATGGGTGGGGATCAAGTCATCTTAGCCACAGCTGG
ATATGATCACACAATCAGATTCTGGCAAGCCCACAGTGGTGTTTGTCTAC
GTACAGTGCAACATTCAGATTCCCAAGTCAACGCAATGGAAGTGACACCT
GACCGGCAACTCTTGGCTGCAGCAGGATACCAGCATATCAGGATGTATGA
TATTCCATCTGGTAATGCAAACCCAGTCATCAATTATGATGGAGTTTCGA
AGAATATTACTGCTGTTGGTTTCCAAGAGAAAGGAAAATGGATGTTTACT
GGTGGTGAAGACAAAGCAGTGCGAATCTGGGACATGCGATCACGGAATCT
GCAATGTCAGCATATGTTTCAAGTTGGGGCACCTGTCACTTCAGTGGTGT
TGCATCCTAACCAAACACAGTTGATTGTGGGTGACCAAAGTGGTGCTATC
AATATGTGGGATCTGAAGACTCATCATAATGAACAACTTATTCCTGATAC
AGACGCTGTCATTCAATCAGTTGCAATCGGTCAAGATGGGAAATACATGG
CTTGCATTAACGATAAGGGAACATGTCTTATTTGGAGCTTAGCTGGAAAC
AAAGAAGAACGTACTTTATTCTATCCCAAACAGAAAATTCCCGCTCACAA
AACATACGGACTTAAATGTTTATTCAGCCCTGATTCATCTCTCTTAGCAA
CTACATCGGCTGACGGTACTTTGAAATTATGGAAAACTAAGGATTTTTCA
CTATACAAGACATTAGGTGATTCGAGCCAACGTTGGGTATGGGATTGTTC
TTTCTCTGAAGATTCACATTACATTATAACAGCGTCTTCAGGTAATCATG
GACGGCTTTGGAATATTGATAAAAGTGAAGCTATCAGAGAATACATTGGA
CATCAGAAAGCAGTCATTTGTCTGGCATTCAAAGATGTGAAATGAATCAA
TGGTTAATTTAATAGTAAAAATGTTTACTCATCCAATTTCCTTGCTATGG
AGCCATGGATGTCTGGGGGAATACTTGGATATTCAGCGACGATCAAGTCA
ACCAGGAAGGTATATTGAAGGATATTGATGTAGATATTGGTATCAATCGT
GCTCTTGTTTTTTAGTAGTTCTTCAAAAcaattattttagaatttatgat
ttttggataaaataCCCATAGATGACCATTAAATAAGTTGTTAAGTGTTA
TATACATTTCGACAATGCTTTATGGTCGATGAaggttttttaaagttttt
ctgtGTTGTTTTTTATCTTGCCGACTGAACTGATTTAATTACGTACCAAA
GAAATTCCTCGTGAGGCCTGATATAAGCATTCCGCATGTGTATTAGTTTC
TTTATGGAGTTATATTTTTTCTACAACTGAtttataaataataaatattg
CTATCATAATTTTAaggtccaaaattttttttattcaggaAGTGAAtaac
attttttctttgtacataAAATTAGAAGAAAATGACTTTAGTTAACCTTA
TAGTATACCCTACCATTCATCTATACATACATACACACAATTACGACATT
CTGTGCTTGAATTTTTACTAAAGCTGGCTATCTTTGATATTCAGTAATGA
TCTTG Run BLAST on NCBI transcript from alignment at sc0000072:333159..336505- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006934 ID=TCONS_00006934|Name=TCONS_00006934|organism=Clytia hemisphaerica|type=transcript|length=3347bp|location=Sequence derived from alignment at sc0000072:333159..336505- (Clytia hemisphaerica)
TTTATACTGCTTTCTGCTGTGATATTTGTCTATCGTTGTTTCTTTATGTA
TCTTTTCAGTGATCAGAAAATTAAATAAATATAAGGAAAAAAAATACATT
TAACCCAAACTCACTATGGGTGGGGATCAAGTCATCTTAGCCACAGCTGG
ATATGATCACACAATCAGATTCTGGCAAGCCCACAGTGGTGTTTGTCTAC
GTACAGTGCAACATTCAGATTCCCAAGTCAACGCAATGGAAGTGACACCT
GACCGGCAACTCTTGGCTGCAGCAGGATACCAGCATATCAGGATGTATGA
TATTCCATCTGGTAATGCAAACCCAGTCATCAATTATGATGGAGTTTCGA
AGAATATTACTGCTGTTGGTTTCCAAGAGAAAGGAAAATGGATGTTTACT
GGTAAAGAGGATAAGTCTGACCTGATTGTCTGCCTTTTTCTGATTCCATT
TGTTTGTCAGAGCACTGCTGTAGACTAAATTATAATAATATACAAAATAT
ACAAATATTTTACGTGGCATGCTTCAAGAAATTCAACAGCTTTTAGACAA
CTGAGGAATTGTTTCAACAAAGGGCCACTCACTATCAAGCTTTTTTAATA
GGACGAAGTCTACTTTGTAAATATCATGGAGTGTATTTCATTTAACTTTT
ACTTTGTATCAAGTTAGTCACGTTAGCCATCATTAAACTCTGTTCATGTT
ACTAAATTTTAGCATTCTATTTAACAAGCATTAATATTAAGTTTTTCTGT
GGTTTTTATTTTTGTGTACTTTTTTATTCTCAAACTTTTTTCTCCAGGTG
GTGAAGACAAAGCAGTGCGAATCTGGGACATGCGATCACGGAATCTGCAA
TGTCAGCATATGTTTCAAGTTGGGGCACCTGTCACTTCAGTGGTGTTGCA
TCCTAACCAAACACAGTTGATTGTGGGTGACCAAAGTGGTGCTATCAATA
TGTGGGATCTGAAGACTCATCATAATGAACAACTTATTCCTGATACAGGT
TTCCATACTAATTTGAAAACATAATTATAGACTTCCTTTAGTTCATGAGA
AAAGTTAGGGTGTTAGTCAAAAATTGGAGGGAGGGAGTGAGGGGAATCAA
ATGGGGATCAAATAAGAAAGGAAGGGTTTTNTGATAGTCAAAAATTGGAG
GGTGGGAGTGAGGGGAATCAAATGGGGATCAAATAAGAAAGGAAGGTTTT
TGGAGATTTTAGTAAACAAAAAGGCTACATTCTGTTTTAAAGTAAAAAAT
TTGTACCAACAAAACACAAGAATGTGTATCACGTTAATTAAAACGCTAGT
TATATTGTTATATTGTGAAATATTTACGAGAATTACTTCCAAACTTTAGA
CGCTGTCATTCAATCAGTTGCAATCGGTCAAGATGGGAAATACATGGCTT
GCATTAACGATAAGGGAACATGTCTTATTTGGAGCTTAGCTGGAAACAAA
GAAGAACGTACTTTATTCTATCCCAAACAGAAAATTCCCGCTCACAAAAC
ATACGGACTTAAATGTTTATTCAGCCCTGATTCATCTCTCTTAGCAACTA
CATCGGCTGACGGTACTTTGAAATTATGGAAAACTAAGGATTTTTCACTA
TACAAGACATTAGGTGATTCGAGCCAACGTTGGGTATGGGATTGTTCTTT
CTCTGAAGATTCACATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTATTTTTGTGTACTTTTTTATTCTCAAACTTT
TTTCTCCAGGTGGTGAAGACAAAGCAGTGCGAATCTGGGACATGCGATCA
CGGAATCTGCAATGTCAGCATATGTTTCAAGTTGGGGCACCTGTCACTTC
AGTGGTGTTGCATCCTAACCAAACACAGTTGATTGTGGGTGACCAAAGTG
GTGCTATCAATATGTGGGATCTGAAGACTCATCATAATGAACAACTTATT
CCTGATACAGGTTTCCATACTAATTTGAAAACATAATTATAGACTTCCTT
TAGTTCATGAGAAAAGTTAGGGTGTTTGATAGTCAAAAATTGGAGGGTGG
GAGTGAGGGGAATCAAATGGGGATCAAATAAGAAAGGAAGGTTTTTGGAG
ATTTTAGTAAACAAAAAGGCTACATTCTGTTTTAAAGTAAAAAATTTGTA
CCAACAAAACACAAGAATGTGTATCACGTTAATTAAAACGCTAGTTATAT
TGTTATATTGTGAAATATTTACGAGAATTACTTTCAAACTTTAGACGCTG
TCATTCAATCAGTTGCAATCGGTCAAGATGGGAAATACATGGCTTGCATT
AACGATAAGGGAACATGTCTTATTTGGAGCTTAGCTGGAAACAAAGAAGA
ACGTACTTTATTCTATCCCAAACAGAAAATTCCCGCTCACAAAACATACG
GACTTAAATGTTTATTCAGCCCTGATTCATCTCTCTTAGCAACTACATCG
GCTGACGGTACTTTGAAATTATGGAAAACTAAGGATTTTTCACTATACAA
GACATTAGGTGATTCGAGCCAACGTTGGGTATGGGATTGTTCTTTCTCTG
AAGATTCACATTACATTATAACAGCGTCTTCAGGTAATCATGGACGGCTT
TGGAATATTGATAAAAGTGAAGCTATCAGAGAATACATTGGACATCAGAA
AGCAGTCATTTGTCTGGCATTCAAAGATGTGAAATGAATCAATGGTTAAT
TTAATAGTAAAAATGTTTACTCATCCAATTTCCTTGCTATGGAGCCATGG
ATGTCTGGGGGAATACTTGGATATTCAGCGACGATCAAGTCAACCAGGAA
GGTATATTGAAGGATATTGATGTAGATATTGGTATCAATCGTGCTCTTGT
TTTTTAGTAGTTCTTCAAAACAATTATTTTAGAATTTATGATTTTTGGAT
AAAATACCCATAGATGACCATTAAATAAGTTGTTAAGTGTTATATACATT
TCGACAATGCTTTATGGTCGATGAAGGTTTTTTAAAGTTTTTCTGTGTTG
TTTTTTATCTTGCCGACTGAACTGATTTAATTACGTACCAAAGAAATTCC
TCGTGAGGCCTGATATAAGCATTCCGCATGTGTATTAGTTTCTTTATGGA
GTTATATTTTTTCTACAACTGATTTATAAATAATAAATATTGCTATCATA
ATTTTAAGGTCCAAAATTTTTTTTATTCAGGAAGTGAATAACATTTTTTC
TTTGTACATAAAATTAGAAGAAAATGACTTTAGTTAACCTTATAGTATAC
CCTACCATTCATCTATACATACATACACACAATTACGACATTCTGTGCTT
GAATTTTTACTAAAGCTGGCTATCTTTGATATTCAGTAATGATCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006934-exon-sc0000072-1575043694:336105..336505 | TCONS_00006934-exon-sc0000072-1575043694:336105..336505 | Clytia hemisphaerica | exon |
| TCONS_00006934-exon-sc0000072-1575043694:335508..335708 | TCONS_00006934-exon-sc0000072-1575043694:335508..335708 | Clytia hemisphaerica | exon |
| TCONS_00006934-exon-sc0000072-1575043694:333159..334261 | TCONS_00006934-exon-sc0000072-1575043694:333159..334261 | Clytia hemisphaerica | exon |
| TCONS_00006934-exon-sc0000072-1510915933:336105..336505 | TCONS_00006934-exon-sc0000072-1510915933:336105..336505 | Clytia hemisphaerica | exon |
| TCONS_00006934-exon-sc0000072-1510915933:335508..335708 | TCONS_00006934-exon-sc0000072-1510915933:335508..335708 | Clytia hemisphaerica | exon |
| TCONS_00006934-exon-sc0000072-1510915933:333159..334261 | TCONS_00006934-exon-sc0000072-1510915933:333159..334261 | Clytia hemisphaerica | exon |
| TCONS_00006934-exon-sc0000072-1491911889:336105..336505 | TCONS_00006934-exon-sc0000072-1491911889:336105..336505 | Clytia hemisphaerica | exon |
| TCONS_00006934-exon-sc0000072-1491911889:335508..335708 | TCONS_00006934-exon-sc0000072-1491911889:335508..335708 | Clytia hemisphaerica | exon |
| TCONS_00006934-exon-sc0000072-1491911889:333159..334261 | TCONS_00006934-exon-sc0000072-1491911889:333159..334261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:333159..336505 - |
Blast
BLAST of TCONS_00006934 vs. Swiss-Prot (Human)
Match: LST8 (Target of rapamycin complex subunit LST8 OS=Homo sapiens GN=MLST8 PE=1 SV=1) HSP 1 Score: 430.254 bits (1105), Expect = 8.446e-147 Identity = 201/316 (63.61%), Postives = 239/316 (75.63%), Query Frame = 2
Query: 113 TMGGDQVILATAGYDHTIRFWQAHSGVCLRTVQHSDSQVNAMEVTPDRQLLAAAGYQHIRMYDIPSGNANPVINYDGVSKNITAVGFQEKGKWMFTGGEDKAVRIWDMRSRNLQCQHMFQVGAPVTSVVLHPNQTQLIVGDQSGAINMWDLKTHHNEQLIPDTDAVIQSVAIGQDGKYMACINDKGTCLIWSLAGN-KEERTLFYPKQKIPAHKTYGLKCLFSPDSSLLATTSADGTLKLWKTKDFSLYKTL-------GDSSQRWVWDCSFSEDSHYIITASSGNHGRLWNIDKSEAIREYIGHQKAVICLAFKD 1036
T+G D VILATAGYDHT+RFWQAHSG+C RTVQH DSQVNA+EVTPDR ++AAAGYQHIRMYD+ S N NP+I+YDGV+KNI +VGF E G+WM+TGGED RIWD+RSRNLQCQ +FQV AP+ V LHPNQ +LIVGDQSGAI++WDLKT HNEQLIP+ + I S I D YMA +N G C +W+L G +E T PK KIPAH Y L+C FSPDS+LLAT SAD T K+W+T +FSL L G+SS+ W+W C+FS DS YI+TASS N RLW ++ E REY GHQKAV+CLAF D
Sbjct: 7 TVGSDPVILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNSNNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGAIHIWDLKTDHNEQLIPEPEVSITSAHIDPDASYMAAVNSTGNCYVWNLTGGIGDEVTQLIPKTKIPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSGNPGESSRGWMWGCAFSGDSQYIVTASSDNLARLWCVETGEIKREYGGHQKAVVCLAFND 322
The following BLAST results are available for this feature:
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