XLOC_003879 (gene) - C. hemisphaerica

Overview
NameXLOC_003879
Unique NameXLOC_003879
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000072:333159..336505-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003879 ID=XLOC_003879|Name=XLOC_003879|organism=Clytia hemisphaerica|type=gene|length=3347bp|location=Sequence derived from alignment at sc0000072:333159..336505- (Clytia hemisphaerica)
TTTATACTGCTTTCTGCTGTGATATTTGTCTATCGTTGTTTCTTTATGTA
TCTTTTCAGTGATCAGAAAATTAAATAAATATAAGGAAAAAAAATACATT
TAACCCAAACTCACTATGGGTGGGGATCAAGTCATCTTAGCCACAGCTGG
ATATGATCACACAATCAGATTCTGGCAAGCCCACAGTGGTGTTTGTCTAC
GTACAGTGCAACATTCAGATTCCCAAGTCAACGCAATGGAAGTGACACCT
GACCGGCAACTCTTGGCTGCAGCAGGATACCAGCATATCAGGATGTATGA
TATTCCATCTGGTAATGCAAACCCAGTCATCAATTATGATGGAGTTTCGA
AGAATATTACTGCTGTTGGTTTCCAAGAGAAAGGAAAATGGATGTTTACT
GGTAAAGAGGATAAGTCTGACCTGATTGTCTGCCTTTTTCTGATTCCATT
TGTTTGTCAGAGCACTGCTGTAGACTAAATTATAATAATATACAAAATAT
ACAAATATTTTACGTGGCATGCTTCAAGAAATTCAACAGCTTTTAGACAA
CTGAGGAATTGTTTCAACAAAGGGCCACTCACTATCAAGCTTTTTTAATA
GGACGAAGTCTACTTTGTAAATATCATGGAGTGTATTTCATTTAACTTTT
ACTTTGTATCAAGTTAGTCACGTTAGCCATCATTAAACTCTGTTCATGTT
ACTAAATTTTAGCATTCTATTTAACAAGCATTAATATTAAGTTTTTCTGT
GGTTTTTATTTTTGTGTACTTTTTTATTCTCAAACTTTTTTCTCCAGGTG
GTGAAGACAAAGCAGTGCGAATCTGGGACATGCGATCACGGAATCTGCAA
TGTCAGCATATGTTTCAAGTTGGGGCACCTGTCACTTCAGTGGTGTTGCA
TCCTAACCAAACACAGTTGATTGTGGGTGACCAAAGTGGTGCTATCAATA
TGTGGGATCTGAAGACTCATCATAATGAACAACTTATTCCTGATACAGGT
TTCCATACTAATTTGAAAACATAATTATAGACTTCCTTTAGTTCATGAGA
AAAGTTAGGGTGTTAGTCAAAAATTGGAGGGAGGGAGTGAGGGGAATCAA
ATGGGGATCAAATAAGAAAGGAAGGGTTTTNTGATAGTCAAAAATTGGAG
GGTGGGAGTGAGGGGAATCAAATGGGGATCAAATAAGAAAGGAAGGTTTT
TGGAGATTTTAGTAAACAAAAAGGCTACATTCTGTTTTAAAGTAAAAAAT
TTGTACCAACAAAACACAAGAATGTGTATCACGTTAATTAAAACGCTAGT
TATATTGTTATATTGTGAAATATTTACGAGAATTACTTCCAAACTTTAGA
CGCTGTCATTCAATCAGTTGCAATCGGTCAAGATGGGAAATACATGGCTT
GCATTAACGATAAGGGAACATGTCTTATTTGGAGCTTAGCTGGAAACAAA
GAAGAACGTACTTTATTCTATCCCAAACAGAAAATTCCCGCTCACAAAAC
ATACGGACTTAAATGTTTATTCAGCCCTGATTCATCTCTCTTAGCAACTA
CATCGGCTGACGGTACTTTGAAATTATGGAAAACTAAGGATTTTTCACTA
TACAAGACATTAGGTGATTCGAGCCAACGTTGGGTATGGGATTGTTCTTT
CTCTGAAGATTCACATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTATTTTTGTGTACTTTTTTATTCTCAAACTTT
TTTCTCCAGGTGGTGAAGACAAAGCAGTGCGAATCTGGGACATGCGATCA
CGGAATCTGCAATGTCAGCATATGTTTCAAGTTGGGGCACCTGTCACTTC
AGTGGTGTTGCATCCTAACCAAACACAGTTGATTGTGGGTGACCAAAGTG
GTGCTATCAATATGTGGGATCTGAAGACTCATCATAATGAACAACTTATT
CCTGATACAGGTTTCCATACTAATTTGAAAACATAATTATAGACTTCCTT
TAGTTCATGAGAAAAGTTAGGGTGTTTGATAGTCAAAAATTGGAGGGTGG
GAGTGAGGGGAATCAAATGGGGATCAAATAAGAAAGGAAGGTTTTTGGAG
ATTTTAGTAAACAAAAAGGCTACATTCTGTTTTAAAGTAAAAAATTTGTA
CCAACAAAACACAAGAATGTGTATCACGTTAATTAAAACGCTAGTTATAT
TGTTATATTGTGAAATATTTACGAGAATTACTTTCAAACTTTAGACGCTG
TCATTCAATCAGTTGCAATCGGTCAAGATGGGAAATACATGGCTTGCATT
AACGATAAGGGAACATGTCTTATTTGGAGCTTAGCTGGAAACAAAGAAGA
ACGTACTTTATTCTATCCCAAACAGAAAATTCCCGCTCACAAAACATACG
GACTTAAATGTTTATTCAGCCCTGATTCATCTCTCTTAGCAACTACATCG
GCTGACGGTACTTTGAAATTATGGAAAACTAAGGATTTTTCACTATACAA
GACATTAGGTGATTCGAGCCAACGTTGGGTATGGGATTGTTCTTTCTCTG
AAGATTCACATTACATTATAACAGCGTCTTCAGGTAATCATGGACGGCTT
TGGAATATTGATAAAAGTGAAGCTATCAGAGAATACATTGGACATCAGAA
AGCAGTCATTTGTCTGGCATTCAAAGATGTGAAATGAATCAATGGTTAAT
TTAATAGTAAAAATGTTTACTCATCCAATTTCCTTGCTATGGAGCCATGG
ATGTCTGGGGGAATACTTGGATATTCAGCGACGATCAAGTCAACCAGGAA
GGTATATTGAAGGATATTGATGTAGATATTGGTATCAATCGTGCTCTTGT
TTTTTAGTAGTTCTTCAAAACAATTATTTTAGAATTTATGATTTTTGGAT
AAAATACCCATAGATGACCATTAAATAAGTTGTTAAGTGTTATATACATT
TCGACAATGCTTTATGGTCGATGAAGGTTTTTTAAAGTTTTTCTGTGTTG
TTTTTTATCTTGCCGACTGAACTGATTTAATTACGTACCAAAGAAATTCC
TCGTGAGGCCTGATATAAGCATTCCGCATGTGTATTAGTTTCTTTATGGA
GTTATATTTTTTCTACAACTGATTTATAAATAATAAATATTGCTATCATA
ATTTTAAGGTCCAAAATTTTTTTTATTCAGGAAGTGAATAACATTTTTTC
TTTGTACATAAAATTAGAAGAAAATGACTTTAGTTAACCTTATAGTATAC
CCTACCATTCATCTATACATACATACACACAATTACGACATTCTGTGCTT
GAATTTTTACTAAAGCTGGCTATCTTTGATATTCAGTAATGATCTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006936TCONS_00006936Clytia hemisphaericatranscript
TCONS_00006935TCONS_00006935Clytia hemisphaericatranscript
TCONS_00006934TCONS_00006934Clytia hemisphaericatranscript
TCONS_00006933TCONS_00006933Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006933-proteinTCONS_00006933-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:333159..336505 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
MLST8PREDICTED: target of rapamycin complex subunit LST8 isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.22	24.55	11.06	9.16	41.97	33.65	34.16	37.52	31.19	29.82	25.82	19.24	20.65	22.1	21.68	22.17	30.91	27.43	15.27	14.45	20	18.28	32.9	28.14	31.43	27.57	14.42	10.15	27.54	23.96