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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006936 ID=TCONS_00006936|Name=TCONS_00006936|organism=Clytia hemisphaerica|type=transcript|length=918bp
TTTATACTGCTTTCTGCTGTGATATTTGTCTATCGTTGTTTCTTTATGTA
TCTTTTCAGTGatcagaaaattaaataaatataaggaaaaaaaatacatt
taaccCAAACTCACTATGGGTGGGGATCAAGTCATCTTAGCCACAGCTGG
ATATGATCACACAATCAGATTCTGGCAAGCCCACAGTGGTGTTTGTCTAC
GTACAGTGCAACATTCAGATTCCCAAGTCAACGCAATGGAAGTGACACCT
GACCGGCAACTCTTGGCTGCAGCAGGATACCAGCATATCAGGATGTATGA
TATTCCATCTGGTAATGCAAACCCAGTCATCAATTATGATGGAGTTTCGA
AGAATATTACTGCTGTTGGTTTCCAAGAGAAAGGAAAATGGATGTTTACT
GGTGGTGAAGACAAAGCAGTGCGAATCTGGGACATGCGATCACGGAATCT
GCAATGTCAGCATATGTTTCAAGTTGGGGCACCTGTCACTTCAGTGGTGT
TGCATCCTAACCAAACACAGTTGATTGTGGGTGACCAAAGTGGTGCTATC
AATATGTGGGATCTGAAGACTCATCATAATGAACAACTTATTCCTGATAC
AGACGCTGTCATTCAATCAGTTGCAATCGGTCAAGATGGGAAATACATGG
CTTGCATTAACGATAAGGGAACATGTCTTATTTGGAGCTTAGCTGGAAAC
AAAGAAGAACGTACTTTATTCTATCCCAAACAGAAAATTCCCGCTCACAA
AACATACGGACTTAAATGTTTATTCAGCCCTGATTCATCTCTCTTAGCAA
CTACATCGGCTGACGGTACTTTGAAATTATGGAAAACTAAGGATTTTTCA
CTATACAAGACATTAGGTGATTCGAGCCAACGTTGGGTATGGGATTGTTC
TTTCTCTGAAGATTCACA Run BLAST on NCBI transcript from alignment at sc0000072:334841..336505- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006936 ID=TCONS_00006936|Name=TCONS_00006936|organism=Clytia hemisphaerica|type=transcript|length=1665bp|location=Sequence derived from alignment at sc0000072:334841..336505- (Clytia hemisphaerica)
TTTATACTGCTTTCTGCTGTGATATTTGTCTATCGTTGTTTCTTTATGTA
TCTTTTCAGTGATCAGAAAATTAAATAAATATAAGGAAAAAAAATACATT
TAACCCAAACTCACTATGGGTGGGGATCAAGTCATCTTAGCCACAGCTGG
ATATGATCACACAATCAGATTCTGGCAAGCCCACAGTGGTGTTTGTCTAC
GTACAGTGCAACATTCAGATTCCCAAGTCAACGCAATGGAAGTGACACCT
GACCGGCAACTCTTGGCTGCAGCAGGATACCAGCATATCAGGATGTATGA
TATTCCATCTGGTAATGCAAACCCAGTCATCAATTATGATGGAGTTTCGA
AGAATATTACTGCTGTTGGTTTCCAAGAGAAAGGAAAATGGATGTTTACT
GGTAAAGAGGATAAGTCTGACCTGATTGTCTGCCTTTTTCTGATTCCATT
TGTTTGTCAGAGCACTGCTGTAGACTAAATTATAATAATATACAAAATAT
ACAAATATTTTACGTGGCATGCTTCAAGAAATTCAACAGCTTTTAGACAA
CTGAGGAATTGTTTCAACAAAGGGCCACTCACTATCAAGCTTTTTTAATA
GGACGAAGTCTACTTTGTAAATATCATGGAGTGTATTTCATTTAACTTTT
ACTTTGTATCAAGTTAGTCACGTTAGCCATCATTAAACTCTGTTCATGTT
ACTAAATTTTAGCATTCTATTTAACAAGCATTAATATTAAGTTTTTCTGT
GGTTTTTATTTTTGTGTACTTTTTTATTCTCAAACTTTTTTCTCCAGGTG
GTGAAGACAAAGCAGTGCGAATCTGGGACATGCGATCACGGAATCTGCAA
TGTCAGCATATGTTTCAAGTTGGGGCACCTGTCACTTCAGTGGTGTTGCA
TCCTAACCAAACACAGTTGATTGTGGGTGACCAAAGTGGTGCTATCAATA
TGTGGGATCTGAAGACTCATCATAATGAACAACTTATTCCTGATACAGGT
TTCCATACTAATTTGAAAACATAATTATAGACTTCCTTTAGTTCATGAGA
AAAGTTAGGGTGTTAGTCAAAAATTGGAGGGAGGGAGTGAGGGGAATCAA
ATGGGGATCAAATAAGAAAGGAAGGGTTTTNTGATAGTCAAAAATTGGAG
GGTGGGAGTGAGGGGAATCAAATGGGGATCAAATAAGAAAGGAAGGTTTT
TGGAGATTTTAGTAAACAAAAAGGCTACATTCTGTTTTAAAGTAAAAAAT
TTGTACCAACAAAACACAAGAATGTGTATCACGTTAATTAAAACGCTAGT
TATATTGTTATATTGTGAAATATTTACGAGAATTACTTCCAAACTTTAGA
CGCTGTCATTCAATCAGTTGCAATCGGTCAAGATGGGAAATACATGGCTT
GCATTAACGATAAGGGAACATGTCTTATTTGGAGCTTAGCTGGAAACAAA
GAAGAACGTACTTTATTCTATCCCAAACAGAAAATTCCCGCTCACAAAAC
ATACGGACTTAAATGTTTATTCAGCCCTGATTCATCTCTCTTAGCAACTA
CATCGGCTGACGGTACTTTGAAATTATGGAAAACTAAGGATTTTTCACTA
TACAAGACATTAGGTGATTCGAGCCAACGTTGGGTATGGGATTGTTCTTT
CTCTGAAGATTCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006936-exon-sc0000072-1575043694:336105..336505 | TCONS_00006936-exon-sc0000072-1575043694:336105..336505 | Clytia hemisphaerica | exon |
| TCONS_00006936-exon-sc0000072-1575043694:335508..335708 | TCONS_00006936-exon-sc0000072-1575043694:335508..335708 | Clytia hemisphaerica | exon |
| TCONS_00006936-exon-sc0000072-1575043694:334841..335156 | TCONS_00006936-exon-sc0000072-1575043694:334841..335156 | Clytia hemisphaerica | exon |
| TCONS_00006936-exon-sc0000072-1510915933:336105..336505 | TCONS_00006936-exon-sc0000072-1510915933:336105..336505 | Clytia hemisphaerica | exon |
| TCONS_00006936-exon-sc0000072-1510915933:335508..335708 | TCONS_00006936-exon-sc0000072-1510915933:335508..335708 | Clytia hemisphaerica | exon |
| TCONS_00006936-exon-sc0000072-1510915933:334841..335156 | TCONS_00006936-exon-sc0000072-1510915933:334841..335156 | Clytia hemisphaerica | exon |
| TCONS_00006936-exon-sc0000072-1491911889:336105..336505 | TCONS_00006936-exon-sc0000072-1491911889:336105..336505 | Clytia hemisphaerica | exon |
| TCONS_00006936-exon-sc0000072-1491911889:335508..335708 | TCONS_00006936-exon-sc0000072-1491911889:335508..335708 | Clytia hemisphaerica | exon |
| TCONS_00006936-exon-sc0000072-1491911889:334841..335156 | TCONS_00006936-exon-sc0000072-1491911889:334841..335156 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:334841..336505 - |
Blast
BLAST of TCONS_00006936 vs. Swiss-Prot (Human)
Match: LST8 (Target of rapamycin complex subunit LST8 OS=Homo sapiens GN=MLST8 PE=1 SV=1) HSP 1 Score: 378.637 bits (971), Expect = 1.511e-130 Identity = 176/276 (63.77%), Postives = 210/276 (76.09%), Query Frame = 2
Query: 113 TMGGDQVILATAGYDHTIRFWQAHSGVCLRTVQHSDSQVNAMEVTPDRQLLAAAGYQHIRMYDIPSGNANPVINYDGVSKNITAVGFQEKGKWMFTGGEDKAVRIWDMRSRNLQCQHMFQVGAPVTSVVLHPNQTQLIVGDQSGAINMWDLKTHHNEQLIPDTDAVIQSVAIGQDGKYMACINDKGTCLIWSLAGN-KEERTLFYPKQKIPAHKTYGLKCLFSPDSSLLATTSADGTLKLWKTKDFSLYKTL-------GDSSQRWVWDCSFSEDS 916
T+G D VILATAGYDHT+RFWQAHSG+C RTVQH DSQVNA+EVTPDR ++AAAGYQHIRMYD+ S N NP+I+YDGV+KNI +VGF E G+WM+TGGED RIWD+RSRNLQCQ +FQV AP+ V LHPNQ +LIVGDQSGAI++WDLKT HNEQLIP+ + I S I D YMA +N G C +W+L G +E T PK KIPAH Y L+C FSPDS+LLAT SAD T K+W+T +FSL L G+SS+ W+W C+FS DS
Sbjct: 7 TVGSDPVILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNSNNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGAIHIWDLKTDHNEQLIPEPEVSITSAHIDPDASYMAAVNSTGNCYVWNLTGGIGDEVTQLIPKTKIPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSGNPGESSRGWMWGCAFSGDS 282
The following BLAST results are available for this feature:
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