|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007011 ID=TCONS_00007011|Name=TCONS_00007011|organism=Clytia hemisphaerica|type=transcript|length=776bp
CTGGTCTACACTTGAACAATCTTGATACATTGATCTATACTGCAAAAATG
AATTCTTTTCTCGTTTTCACTTTACTTGTTGTCaccatgatgacgtcatc
agttttcgGTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCATGT
GGAGATTCGGCTTCCGGCAAAATGGAGCAAATTATAATGATAATCAACTG
TGGTGTGGAGGCCGTTCAACACAAAGGAGAAACAAGGGTCGATGTGGCGT
CTGTGGAGATCCTTTCGATGCAAAAATTCAACCTCACATGGACGGAGGTC
GTTTTGGAAACAGGATCATTGGCAAAACCTACAAAAGTGGAGAAGCTATT
AAAATCAACGTCTTGTTGACTGCAAGCCATTTGGGATACTTCGAATTCCG
TATCGGAGATTTCAGCAACAGTGATACTTCTGGTGACAAAGAAGGAAAGT
TGAAAGGAGTTCTCTTAAAACAGGTTAGTGGATCAACGAAATATTACATT
CGCTCAGCTGGCGCAAGATCTCACAATATCCACTTGCAATTACCTACCAA
CTTGGCTTGTGAACGTTGTGTGATTCAATGGTGGTACAAAACTGGCAACT
CTTGGGGATGTGATGCTGAAGGCTGTGGTATGGGCCATGGATTTCAAGAA
ACGTTCGTCAACTGTGCTGACGTTCGCGTTGAATAAGAAGCCGTTCCTTT
GGTCGTCAAAATTTTCGTCTGGTATTGTTATAATTTTGGTGATAGTAATT
CTTAAAAGTAATTCTTTAAGAAAAAG Run BLAST on NCBI protein sequence of TCONS_00007011-protein >TCONS_00007011-protein ID=TCONS_00007011-protein|Name=TCONS_00007011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
GLHLNNLDTLIYTAKMNSFLVFTLLVVTMMTSSVFGHGYMRSPPARNSMW
RFGFRQNGANYNDNQLWCGGRSTQRRNKGRCGVCGDPFDAKIQPHMDGGR
FGNRIIGKTYKSGEAIKINVLLTASHLGYFEFRIGDFSNSDTSGDKEGKL
KGVLLKQVSGSTKYYIRSAGARSHNIHLQLPTNLACERCVIQWWYKTGNS
WGCDAEGCGMGHGFQETFVNCADVRVE Run BLAST on NCBI transcript from alignment at sc0000073:99831..102818+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007011 ID=TCONS_00007011|Name=TCONS_00007011|organism=Clytia hemisphaerica|type=transcript|length=2988bp|location=Sequence derived from alignment at sc0000073:99831..102818+ (Clytia hemisphaerica)
CTGGTCTACACTTGAACAATCTTGATACATTGATCTATACTGCAAAAATG
AATTCTTTTCTCGTTTTCACTTTACTTGTTGTCaccatgatgacgtcatc
agttttcgGTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCATGT
GGAGATTCGGCTTCCGGCAAAATGGAGCAAATTATAATGATAATCAACTG
TGGTGTGGAGGTATCCCTTTTGAATGAATTCCAtcgttttgcaatttttt
tatatataggGGTACTCTTACCCCTAGCGCACCCAAGATGAGTTTCAAAA
TACCTTTATAAGTGCATCAATGATAATCGGTCCCAATGAGGCCATTCCGC
TTTACGTCCATCAGGGGGGTGGATgaatatttccagggggtctaaaagag
tttttcatttttccaggcgGTTTTTTTTCAGCAgttaaaagactgatttt
agttcaactaccgtcactttaaggtatgaaaataaatttcataaagtttt
ttttagcaAGTTTGTcactttccagggggtatccacacaagAAATGCTTT
TTACGTGAAAAGGTTCGTCAACCCTCCCTACATGGAAATTTAATAGAATG
GTGTAAACGCCCTTAAGTAAAGTACTGACCATTCGGTGACCCTTACTGTA
CTGattgtcaaaacaaaaaaccgattttcgtaagctttgttttctttttc
aatgttATTAGGGTTTCAAATCCCCCTCCACTCGACGGTTGTTTCTCGAT
TTTATCGATGATATTTATTCCACTACAATCGCAATTTTCAGGCCGTTCAA
CACAAAGGAGAAACAAGGGTCGATGTGGCGTCTGTGGAGATCCTTTCGAT
GCAAAAATTCAACCTCACATGTAAGCACCTTTTTATGTTGTGGTTACATC
TTACCCCTGTTGATTGTCGAAAGAAACAtaggaattttttttctattcta
aTCATATTTTAGGAAACTTTTAATCACATTTATTTTTttcggcgagaact
aattttggcaaatttggcgAGTTTAGACAAATTCACCAAAGTTATCTATT
TTACTCACtcataaaattttcaagattttagctcctcgccaaaattagtt
attTTAATGTAGAAAGAAAGTATTGCAAGGTGGCTTTAGGAATACCATAA
CGAAAATCGCAAAATTGATTTCTACATTAAATAGAAAGAAGGAGTTTGAA
ATCGTCAATTCCCGACATTTACATTTTTCAGGGATGGAGGTCGTTTTGGA
AACCGCNTGAGTTCTACATTAAAAGAAAGAAGGAGTTTTAAATCGTCAAT
TCCCGACATTTACATTTTTCAGGGACGGAGGTCGTTTTGGAAACAGGATC
ATTGGCAAAACCTACAAAAGTGGAGAAGCTATTAAAATCAACGTCTTGTT
GACTGCAAGCCATTTGGGATACTTCGAATTCCGTATCGGAGATTTCAGCA
ACAGTGATACTTCTGGTGACAAAGAAGGAAAGTTGAAAGGAGTTCTCTTA
AAACAGGTGAACATATTTGGCCACAGTCTTTGAATataccttatcggagt
ttttgatttttctaaaaaagtgatgcattgagggattgtttcgagtgtat
tacaataggattccctcgaggaattcctagagagatttctattgtaatac
tctgtaaacaatcccacaatgcatcgcttttttagaaaaatcaaaaactc
cgataagatctattgtcTTCCAACATTACATCacgaacccaacagctgat
tggtttaaAGTGACGTATTGAATGATTTTACATCTTTTACAACAAATAGA
CTGTTTGATGTATGATGTGATGTTAGAAGAGATTGCATTGGTGAATTTTA
TGATTCCACACCCATTGCTACTTCTAACCAAAGGCTGCCTGTTTTATTGA
AAGGGCGGCTTCGGTACCACCCGTTTTCGCAATCaagtttaatttacttt
tatctttcaatctttttcgcGAATGTCTTAAACGCGGCTTGTCTGGTTTC
TTGAGAGAATCTTTATGTGCCATTCCTCTTTAAAAAACGCGCAGTCTCCT
TAAAAACTcacttttattgcaaaaaagaGAGAGCTATATCTCATAGAAAA
AAGTGTTTCGAACGAAAAAAAGTAACCTGAGGCACATGATATTGTCATAT
AATGATGAAAACAGCAAAAATGGGTATCCTAGAAATTACTTAACTTCCCC
TTTAAAAATAACATTGGTTTCAAAGCTCCGAAGAGGCTGGAATTGAAACT
CTTGGATTGGAAGTTAAGCCACTTACTTTAGTacaaagtttgtacgccta
aagtattttcCATCCAACAGCAAGATTCCTAAATTTCAAGGCTTCACATA
TTTTTTCTCAATAAGGGTTAAAGATTCTTCTCTAGCcacttcggggcttt
aaactcaattatAGAGACTTGTACTCTTATGTTCCAGATAAAATGGGGGT
TCGAAtaaattcgaaatttttataAACGGGGGaggcctaattgccggggg
gttggaaatgtACTTTTAAAAACCCGAAAATAAGGTAAATCAGgttattt
agagcaaaataaggggccttctctttgacagctgaaaatattcttaaaaa
tcatTAAGTTACTCTTAGGTAAACTTAACAAGCGgtggccgtttatttgg
aacctaagagtaaccgTGATCGTTTCATCATACAGGTTAGTGGATCAACG
AAATATTACATTCGCTCAGCTGGCGCAAGATCTCACAATATCCACTTGCA
ATTACCTACCAACTTGGCTTGTGAACGTTGTGTGATTCAATGGTGGTACA
AAACTGGCAACTCTTGGGGATGTGATGCTGAAGGCTGTGGTATGGGCCAT
GGATTTCAAGAAACGTTCGTCAACTGTGCTGACGTTCGCGTTGAATAAGA
AGCCGTTCCTTTGGTCGTCAAAATTTTCGTCTGGTATTGTTATAATTTTG
GTGATAGTAATTCTTAAAAGTAATTCTTTAAGAAAAAG Coding sequence (CDS) from alignment at sc0000073:99831..102818+ >TCONS_00007011 ID=TCONS_00007011|Name=TCONS_00007011|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000073:99831..102818+ (Clytia hemisphaerica)
GGTCTACACTTGAACAATCTTGATACATTGATCTATACTGCAAAAATGAA
TTCTTTTCTCGTTTTCACTTTACTTGTTGTCaccatgatgacgtcatcag
ttttcgGTCACGGTTACATGAGAAGTCCACCAGCCAGAAACAGCATGTGG
AGATTCGGCTTCCGGCAAAATGGAGCAAATTATAATGATAATCAACTGTG
GTGTGGAGGCCGTTCAACACAAAGGAGAAACAAGGGTCGATGTGGCGTCT
GTGGAGATCCTTTCGATGCAAAAATTCAACCTCACATGGACGGAGGTCGT
TTTGGAAACAGGATCATTGGCAAAACCTACAAAAGTGGAGAAGCTATTAA
AATCAACGTCTTGTTGACTGCAAGCCATTTGGGATACTTCGAATTCCGTA
TCGGAGATTTCAGCAACAGTGATACTTCTGGTGACAAAGAAGGAAAGTTG
AAAGGAGTTCTCTTAAAACAGGTTAGTGGATCAACGAAATATTACATTCG
CTCAGCTGGCGCAAGATCTCACAATATCCACTTGCAATTACCTACCAACT
TGGCTTGTGAACGTTGTGTGATTCAATGGTGGTACAAAACTGGCAACTCT
TGGGGATGTGATGCTGAAGGCTGTGGTATGGGCCATGGATTTCAAGAAAC
GTTCGTCAACTGTGCTGACGTTCGCGTTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007011-exon-sc0000073-1491911889:99831..100040 | TCONS_00007011-exon-sc0000073-1491911889:99831..100040 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1510915933:99831..100040 | TCONS_00007011-exon-sc0000073-1510915933:99831..100040 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1575043694:99831..100040 | TCONS_00007011-exon-sc0000073-1575043694:99831..100040 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1491911889:100622..100700 | TCONS_00007011-exon-sc0000073-1491911889:100622..100700 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1510915933:100622..100700 | TCONS_00007011-exon-sc0000073-1510915933:100622..100700 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1575043694:100622..100700 | TCONS_00007011-exon-sc0000073-1575043694:100622..100700 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1491911889:101153..101336 | TCONS_00007011-exon-sc0000073-1491911889:101153..101336 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1510915933:101153..101336 | TCONS_00007011-exon-sc0000073-1510915933:101153..101336 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1575043694:101153..101336 | TCONS_00007011-exon-sc0000073-1575043694:101153..101336 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1491911889:102516..102818 | TCONS_00007011-exon-sc0000073-1491911889:102516..102818 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1510915933:102516..102818 | TCONS_00007011-exon-sc0000073-1510915933:102516..102818 | Clytia hemisphaerica | exon |
| TCONS_00007011-exon-sc0000073-1575043694:102516..102818 | TCONS_00007011-exon-sc0000073-1575043694:102516..102818 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000073 | supercontig | sc0000073:99831..102818 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004302 | Cellulose/chitin-bd_N |
Blast
The following BLAST results are available for this feature:
|
