TCONS_00007174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007174
Unique NameTCONS_00007174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007174 ID=TCONS_00007174|Name=TCONS_00007174|organism=Clytia hemisphaerica|type=transcript|length=850bp
TCCTTATTTTAAACCAGCATAAATTCGAAGAAGGAAAAGATCAACAGTAC
AAATTCTCCAAACGCTAAAATCATCAtggaaattttcaggaaaatatTCT
TTCTTGCATTAGTTGCCATAACCCTCGTTCATTGTCACGAAACCAAAGAT
GACGAGCTGAAGAAGGAAATCGAACGCGAGGTTCGAAAACAGTTGCAAGA
TGTGGAAAAAGAACAAGAAAAGCTATCAGCAAAAGACGTGAGCGAGAAGA
AACACAAGCaaaaagatgatgatgatgcgGAAGAAGTTCttgaagatgat
gatgatgaaattgATGAATTCGAAGATGAAGATGAAGATTTAGTCATTCA
ACATGCACAACGAAAAGCTTCTTCAGAGATGAAAAAAGATCCATTATTCC
TTGGCAGTTTCATTCGGCGCCGTCGTGATGGGTGCTCAAACCTTTTCCGT
ATACCATTAAGCTCATTTCGAAGACGAATTTTAGCCCCTTATCCCTCTAA
TTGTTTTCGTTGCTGTAGCGCCGGAACCAAATTGTGCCGTCGCCGAGATG
ACAGCAGCCGTCGACGAAGAAGCTGCACAAATGGAATCAGTAAcggcaaa
aaataatttatcccaCATAATCTACTACTATGGGTGCCTTCAATTATTTA
GCTTTATACACTTTATGTTTTGATTGTTGTAACAATACCTAACTTGCTTt
agcacaaaaaaaaattacgataatatttacttttgatttgttttcatGCC
ATCTCTATTCCTAGTATCCATTTCTATTTACCCCTACAAAGAGATTAACT
TTTAGAagcttttcattaaaaaaaaacaccaaaactttCCCAAAAGGTGG
Run BLAST on NCBI

transcript from alignment at sc0000074:101440..104281-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007174 ID=TCONS_00007174|Name=TCONS_00007174|organism=Clytia hemisphaerica|type=transcript|length=2842bp|location=Sequence derived from alignment at sc0000074:101440..104281- (Clytia hemisphaerica)
TCCTTATTTTAAACCAGCATAAATTCGAAGAAGGAAAAGATCAACAGTAC
AAATTCTCCAAACGCTAAAATCATCATGGAAATTTTCAGGAAAATATTCT
TTCTTGCATTAGTTGCCATAACCCTCGTTCATTGTCACGGTGAGTTAAAC
AGTTTGTTGTTTTTATCTTTTTATATCTTTTTAACTTTTAAATACTCTTG
CTGAAAATACCAAAGCTACACTTTCTCAAATCACGTAATATTAGCAGTAA
GCTTTTAAACAAGGCAGAAAATTATACCGTCTTTTCCCTAGAAACATATT
TGAGCGAAGAAGGTGAACGTTAACTGAGCCCAAATGGATACCTCGGCTCT
ATCACCACTCTATTTATAATTACTAGATGTGATTTTGAAACTTTGATTTA
TCAACACGTTTTTTGCTTGTATACTAACTATTTGCTTGTGATCATGAAAA
TTTTGTTTTTAGTCTTTACTTTTTTTTTTGAGAATAATCTGGCCCAGAAG
AAAATATTTTCAAGTACCATTCTACTTGTCTGAAGATTGCGAGCGCAATA
ATATAATATTTTCAATATTACTGACCGAGTAAAACATCATAAAACGTCAT
ATTGTGAATGTTTTATGGAGCAAGTGTCATTTAAATGGTCCCCAATCATT
GACGTATGAAATGTAATGTATAAAAATCAATCATTCCATAAAAGAACAAC
GGTCAAGTCTAATTTTATTATTGCTTTATTGAGTCAGGTCAATTTTAACG
TCACTTGGTTTAAATTTGTATTACTAAATACTATACATTTGCAGAAACCA
AAGATGACGAGCTGAAGAAGGAAATCGAACGCGAGGTTCGAAAACAGTTG
CAAGATGTGGAAAAAGAACAAGAAAAGCTATCAGCAAAAGACGTGAGCGA
GAAGAAACACAAGCAAAAAGATGATGATGATGCGGAAGAAGTTCTTGAAG
ATGATGATGATGAAATTGATGAATTCGAAGATGGTATGCATATTCTGTTG
CTCTTATTATTTTATTTTCATGACTTTAATACATTTCTTCATTTTTCAAA
AGAAAAGTCGAGACAATTTTGGGCTCTTTTACACCCTTTTAACCAATTAA
ACCCTAGATTTGCTTGGAATTAGGCTCCGTTGTTCTTATTTATTTGACCT
TTTTTAGCATAATCCAGGGATAATCAGATGGTTTGAGGTATATAGATTAC
AGAAACCTTCTACTATGGTCCTTAGTAAAACCTCAAAGTATTTTTATGTA
ACAGTTTTCCAAAATTGAGATATCAAAATTTGAAATTTTTGAAAATGGGC
TCTTACATGGTTCTTACGTTGAAATTCTATTCTTTTTATCCTAAAAACAA
ACTTGTAAGTTAAATAACTTGACTTTGGAAAATAGTTAGACAAAGATATT
TTGAGATTTTGCTCAGGACAATAGAAGTATCCCACATGCCAAATATTACA
AACCATCTGATTATCCCTTTAAATAGCCTTGCAAAAAGCACTAATAGCCT
TTATGGCAGATTATATTTAAAATTATTAATATTACATTATCAGAAGATGA
AGATTTAGTCATTCAACATGCACAACGAAAAGCTTCTTCAGAGATGAAAA
AAGATCCATTATTCCTTGGCAGTTTCATTCGGCGCCGTCGTGATGGGTGC
TCAAACCTTTTCCGTATACCATTAAGCTCATTTCGAAGACGAATTTTAGC
CCCTTATCCCTCTAATTGTTTTCGTTGCTGTAGCGCCGGAACCAAGTAAG
TATAATCTTTATGAGCTGAAATTAAATTTTGCTGGAAGGTCCAGGGAAGC
AAAGAAGCAGACTGGGGAAACTTCAGTCCCCACTTTTTGCGAATTTCATC
TCATTTTGAGCCTTCAGTCTTCCCACTTTTACGGTTCTTCCATGGGTCTG
GCTAAGCCTATCATTACGACAAGCGAAATAGTCTTATGATCCTCATAGAA
ATTTAAGTATGATATGCTTGAAATAAATAACTTTCGATCCCTTCCCTGTC
CAGCTGGAAGACAACGTTCTTTTAACGTTTATCTAACGTTCACAACGTCC
ATGTAATGTTAGATGAACGTTAAAACAACATTGTGTGCCGGGAAGACAAA
CTTCTGTAGTAACGTATACTATATTTATGAGGGAGGTTTGATAATTTGCG
TGAATAGTTTTCTATTAATGGTGTGCGGATCGAACCTCTGATAACCAACC
CTTAGAAAGAGATTTAATTTCTGAGCGACTGAGGGACTATTGTGAATTTT
TTGTTGTTTTGAGTCTTTGGGAGCCAAAAACAGACCCTTACACAGCGCTT
ATTTTTGGCTTAAGTTCCTCCTTGGGCTGGAATCCTTAAAACCTTATTGC
AGTGGTGTTAAATGTACATTAAGATGGCATAATTGAAAATACAATTACAA
ATCTCGTCCTCTGATAAGTTCATGGTCTAAAACCACCATTTGATAGGGTA
GGGTCATAGATATTTGTCTATTAATGTTGTTGTTGATGATTAAGCTTTAT
AACATTTCTGCTTATTTTTCAGATTGTGCCGTCGCCGAGATGACAGCAGC
CGTCGACGAAGAAGCTGCACAAATGGAATCAGTAACGGCAAAAAATAATT
TATCCCACATAATCTACTACTATGGGTGCCTTCAATTATTTAGCTTTATA
CACTTTATGTTTTGATTGTTGTAACAATACCTAACTTGCTTTAGCACAAA
AAAAAATTACGATAATATTTACTTTTGATTTGTTTTCATGCCATCTCTAT
TCCTAGTATCCATTTCTATTTACCCCTACAAAGAGATTAACTTTTAGAAG
CTTTTCATTAAAAAAAAACACCAAAACTTTCCCAAAAGGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004024XLOC_004024Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007174-exon-sc0000074-1575043694:104143..104281TCONS_00007174-exon-sc0000074-1575043694:104143..104281Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1575043694:103299..103487TCONS_00007174-exon-sc0000074-1575043694:103299..103487Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1575043694:102537..102738TCONS_00007174-exon-sc0000074-1575043694:102537..102738Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1575043694:101440..101759TCONS_00007174-exon-sc0000074-1575043694:101440..101759Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1510915933:104143..104281TCONS_00007174-exon-sc0000074-1510915933:104143..104281Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1510915933:103299..103487TCONS_00007174-exon-sc0000074-1510915933:103299..103487Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1510915933:102537..102738TCONS_00007174-exon-sc0000074-1510915933:102537..102738Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1510915933:101440..101759TCONS_00007174-exon-sc0000074-1510915933:101440..101759Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1491911889:104143..104281TCONS_00007174-exon-sc0000074-1491911889:104143..104281Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1491911889:103299..103487TCONS_00007174-exon-sc0000074-1491911889:103299..103487Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1491911889:102537..102738TCONS_00007174-exon-sc0000074-1491911889:102537..102738Clytia hemisphaericaexon
TCONS_00007174-exon-sc0000074-1491911889:101440..101759TCONS_00007174-exon-sc0000074-1491911889:101440..101759Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:101440..104281 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.2442	14.5247	6.01549	5.74533	0.928207	0.464084	563.662	630.654	599.276	626.016	338.874	374.123	403.397	331.941	73.7809	94.844	600.655	515.024	482.864	691.166	55.8775	56.8553	22.0958	26.9858	16.1344	22.2588	1.26183	0	0.492748	0.645514
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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