TCONS_00007236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007236
Unique NameTCONS_00007236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007236 ID=TCONS_00007236|Name=TCONS_00007236|organism=Clytia hemisphaerica|type=transcript|length=1553bp
tggagaaaattaaatttttgtttgatttttttatttcgaatatAAATGGT
TATCTTCTTTTCCAGAAAGGTGGCGGTGCTTTGAAGAAAAGTGTCGAAGG
AAAATACAGTCATTTGAAAGGAATTgctTCGGAGATCGAAGTGAAAGAAG
AAATGAAGGATATAAAGaaaaagttaaCGGATAAGATGAAGAAGAGGAAA
AAGGAAAAGGCTGAACGTAAAAAAGAGACTGACTCTGTGGACCAAGTGGC
GACGGTCAAAAGGAACAACTCGATgccaatgaaaaataacaacaaaatcT
TACATGCTCCTCAACGTCATCAAACTGTATCTGATAGACACTCATTATAT
GCTTCCCTACCAAGAAAAGATGTCACATCACCTGGTAAAGCGCCCCCACC
TCGGCCGCCACGCCCTAAGAACGCCCATCTATCGCCTGGAGGCGTTGTCA
ACAAAGAAGAATGTCATTCAGTAGAGTTACCAAGGAAAACATTAGGCGTG
GATTCAACATCTTCAACAACTTTACCGCAGTCGAACAGTGAAGGGAATAT
TGTTGATTTAATGGAGATGTCCTCTTCATCCGCATCTTCCTCACTCTCCT
CGTTTTCGAGTTGTTCACTCGCCAGATCGTTAGATTCACTCGATAGCTCT
GGTGGCTTTTTGAACCCTGCTTTCAAAGACCCTGCTTCTACAACCTCTCA
TCACCAACTACACGAGCCTGAAGGAACTTCAGaacatttgatctttgaaa
cggAATCGGCCGATTCATCACCAAAAATAACCGGTGCCAACCTGAAACGT
GGTAAACCAATACAGCGGAATAATACACCACCCTCAGTGAAACCCGCCCG
ACCAGCTCCACCCCAAAGACCACCCCGGCCTGCCAGTAAAATTCAACAAA
GTCCTACAAGCTCACCAGCTTTGGCACAAAATAGACTTGAAAAACATGAC
GAAGCTTTTATAGAAACTTCAGAATCACAAGATAGGAAATCGATGCTCTT
ACCGAATTCCCCTTTCTATACACCGTCTCAAGATTTACTTGGCCTGGATC
AGTCACTTTTTCATGAGATCGGCTCAAGTTTATCAGAGGATACACGAGCG
AGACTTGCTATAGATTCTCAAAATCAaacccaacaacaacaacaacaacc
agcCTCAACACAGTCAAATCCCTCAAATCCATTTGTTGCACCGACATCCA
GTGATCGTTCTTTATCACCAACAAACCCATTTGCACCCTCATCCAATACT
TTAACCTCGAACATATCGTCAACTACGGTGCGCGATACAAGAGAAATAGA
CCttgtttttgatgaaaacaCAGATTCGGGTGGTCTTCACCGCTCACCTG
TACTGACACGGGCGACCAGTTTTCCATTGAGGAACAGTACAGAGATCTCT
GCTGATAGGGGAGATTCGAGAGGCTCAAGTGCGGATGTTTCTTCGGAGTT
TGATCCTTTTGCGTCTTGTTTTGAAGATGCTAAAAAGGACTTCCAGTTAT
CAGACAAAAGtTTAGCACCATTGCACTTTGATGATATAACCTAGATATTT
TGG
Run BLAST on NCBI

transcript from alignment at sc0000075:385..10119+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007236 ID=TCONS_00007236|Name=TCONS_00007236|organism=Clytia hemisphaerica|type=transcript|length=9735bp|location=Sequence derived from alignment at sc0000075:385..10119+ (Clytia hemisphaerica)
tggagaaaattaaatttttgtttgatttttttatttcgaatatAAATGGT
TATCTTCTTTTCCAGAAAGGTGGCGGTGCTTTGAAGAAAAGTGTCGAAGG
AAAATACAGTCATTTGAAAGGAATTGTACGTATCATCACACTTGTgtaat
ttttatgtttgactattatttttggacctaccccggtggggtggaggtcc
tataaattaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNcacgtagatatcaattatatatgtgttaaatgcatacccaggtag
gtccataaaaaagtatcacttgttatatAAGAAAATCGTTATAATAGTTA
CCTTTTTATAACGTATCGTAACTCGAAGTATTGGTTAACTTTGAGCCTTC
TTAACAATTGAATATATAGCTTCATCTTTTGTGGAACTATTGGAAACAAT
AATCTGTGAACAAACTCTCAACCTTGACAAGGTCCTTGTCAGTGTTCGCC
ACAAAAGGGATAAATTAATATACTCCTTATTaacatactctcgggtactt
tgattgtttagaatatttCATGGTAAAAAGAATAACCAGAAGcgtcatgt
tttttatttaaaaactgtaTATTCGACCTTCACAACAAGAGGTCATCGTC
AGAGTGTAAAAATCTATcaacaagaaaaatttttagaatttttcgtTTAT
AAAGCTTTATTCGATAAATTGAACAGTTTTGCACAATCAACGATCAAGgg
aacctcgtccccgtgtatcccagggtttatttacgttactgatagaTGCC
AGGCTATTATCTGGCGCTATCAGTaggcatcaaaaagctgataataagCA
GGGAACAAGGAATTTGAGATCAAATTTCGATTACAACTCGTGATATTTCG
TTTAGTAAGTGAATGTATCCATGCAACTCGATTGAAATTGGGTTGTCAGT
TCGGTCTCTAAGCTATTTACTGACTGTTATTCGCTCAGATTCGCTTGCAA
AAGTTTTGAACATTTGAATCCTAAGACCTTCTCGTTTATTCATCATCCGT
TCTCaagacatgttttttttttaatttcaggctTCGGAGATCGAAGTGAA
AGAAGAAATGAAGGATATAAAGGTTAGTATGTGTAACAATTTTCATATCC
TTCTCAAAAAGTTTGTGGTAGGTTTGCGCTTTAATCATGAATTTTACAAA
AAGGAATACAAAAGTGAACCGAAGTGAGGCGAAGTAGTGTAGTGGCCATC
GTTCTTGACTTCCGTGCTGGAGGTCAGGGTTCGTTTCCCACTCGGTGCTG
CGATTCacttggcaagtgaatgtaccttggcccgggtcaacccataccat
gtgaggggaatagggtaccatcactctgatacaagagtatggggagaTAT
GCTGGACATGAATGTGGTGTGGTGTGGTGATGGTACTCATATGTTCAATA
CCTGCGAGAACGCAAGGCTCTCCCGTAATGTTCgagtatcatcatcgata
cagcaCGGCTCTGTTGTGTCGGgagcacagagtacaatgtctggtaagcg
ctgtgatttccctatctaggggtaggaaacatcccgggatagggcccggt
ccgatgatatcggagggtcAGCTTCTCTTCTCAGCTTCTCtcatacaaaa
aagaaaaactaactAGAAATTATTAGACCTGACAataaataattcagaat
ataaTAACCAAAgggttaaaatttattttcattgttgttTTACTATAAAA
TTTTGGAAACAAGATAAGCAATAACTTGTGCAGGGGCTATGGGGCAATTA
AAGCATTTTTACCCTAATTCTTAATACTTATTGCCTCGGCCAAGCTAAGT
AATACTTTCATATTGAATACTGTGATATTCAAAATGGTTATTCTAAAGTA
AAAATTCCGTttctattttcagaaaaagttaaCGGATAAGATGAAGAAGA
GGAAAAAGGAAAAGGTATTTTAACCACGCTTTCCGCTCACAAATACCTTA
TATTtccttgaatatttttattttttttttattttccgattTATTTAACG
TTGGTGTTACATAGTTATAATTAAATACTAATTTATACCAACTATTGACA
AAAATGATTATATGAAAAGATAATTTCTATAAAACTATATAATAAAGtga
accgtacatcctgtgcccaagttcaggagttgccataaagccattatggt
aataaccgggagggcacattgctatacattgtNATAAAACTATATAATAA
AGtgaaccgtacatcctgtgcccaagttcaggagttgccataaagccatt
atggtaataaccgggagggcacattacTATACATTGTATAAAGTGAAACT
ATAAATTTTTAggtacatattttacaaaggCAAATATTTGTTAGGTTTAT
TACATTAAGTGAGGATTTAAATGAATCGATGGAAGGCTTAAGCTTAGTAT
TTTCGGGAATTTGGTTCCAAAGTAAGCTTCCACGAAATAAAAAGGATTGC
GTTCCGAAACGATGGGAGGTAGCCTTGGGTATTGACATCaatatgaaata
tgaaatttcttAATGCTACAAATGAATATGCGTGTTTTCATTCCTATGGT
CNATAAAAAGGATTGCGTTCCGAAACGATGGGAGGTAGCCTTGGGTATTG
ACATCaatatgaaatatgaaatttcttAATGCTACAAATGAATACGCGTG
TTTTAAATGGAATTCATACCCATGGTGGTTTCAATGTTTGTTTAGGATTC
CAGTGTCCTTTTCCATGAGGAACTTTTAGGTATTGATTATCTACTTTTTC
GATGGTAAGTTGCCGGATCTGTAAACGAGTCGATTTGGCAATTGACGCCT
TTGCAACGATGAAGTTTAGTCGAAGAATGGAATCTTTTTTCCTCCGTAAG
CGGGGTGGTCTgcgtaatttttaaacaaatgCTAGATTGATTGGAAATGC
GTAACATTAAAGCCTCATTTTCTCTTACCTAAGTAAGCTGAAAAATTCGA
TCGTTGCCTTCGGCTATATCTTATTCACCTCCTTTTACTTGTCATTTAAG
AACACGATTTCTTCTTTCAGGCTGAACGTAAAAAAGAGACTGACTCTGTG
GACCAAGTGGCGACGGTCAAAAGGAACAACTCGATgccaatgaaaaataa
caacaaaatcTTACATGCTCCTCAACGTCATCAAACTGTATCTGATAGAC
ACTCATTATATGCTTCCCTACCAAGAAAAGATGTAAGCTATTGGACGCTT
CTTTGAAGCTTATCCTAATTCATTATCAAACGAATGAAGTAATTTTCAGG
TGTCCGAAGTCTAGAAGATTGCTCATTTTTCCTCATGATAATAGTTTGGA
TAGCGAGAGCTTTTCATTTATGGCAAATGTAAAACGTTATTAGCTCATGT
TTCAAACGTCTTTTCAAGTCTTCCTCTAATTGGGAAACCTCTCCATTTCT
ATTTATCCGACAGGTCACATCACCTGGTAAAGCGCCCCCACCTCGGCCGC
CACGCCCTAAGAACGCCCATCTATCGCCTGGAGGCGTTGTCAACAAAGAA
GAATGTCATTCAGTAGAGTTACCAAGGAAAACATTAGGCGTGGATTCAAC
ATCTTCAACAACTTTACCGCAGTCGAACAGTGAAGGGAATATTGTTGATT
TAATGGAGATGTCCTCTTCATCCGCATCTTCCTCACTCTCCTCGTTTTCG
AGTTGTTCACTCGCCAGATCGTTAGATTCACTCGATGTAAGTTTTGACTA
TTTTCTTTTGATGACTAATGTTAAGTTTCCTTGCTGTTAGTATATTGATG
GGTAGAAGAAACCATCTTGGCACTTTCTATCGAGTTATAAATGTCGTTTC
ATGATTATTATAATAACTTAATATTATCACGTGTCGTTTAACCGCTAGTT
TAACCTTATggtaggcgaaaataaaaaaatgtagtgtttccggaaaccgg
ccgggtgaaaaaataataattttctgacccGGACGCAGATTTCGTTAGTa
gagttctatttcaatgatcttaaattatcaaaaaaagtttttttccggcc
ggccgcacgagagattttttctttgacccgcattccggaaacactacatt
tttttattttcgccttactTTAGGTATTTAGGTCCTTGCTTAAGACTTTC
TTTCAAGATCTTCAAATTCTTTAGATATGAGTTTTATGTCGATAGTTTCT
TTAAGTATTTATAGAACAGGAATAGTAAATTTGTTCTTTAGAGAGGTTCC
TAAAATTCAGATTATATTTCCAGACGTTTTGATCATATATTTTTAAGAGT
TTCTTTAGATTGAAACGATTATCCAGCTTGCAGCGAAGAGCGGGTTATAC
AATGTTTCAAACAGTAATGGTGAGTCCGTGTCTGATAAAAACTAGGCTTG
AAAAGCAGAAAGAACAGTTTGAAGAGATTTTTTGATTAACAGTTAAAGAT
GACTTGAACAAATTGCAGTAGATTCGACCAGGTTTACTTATATGTTTTTC
CAGGTTAACCAAAGTATGAAGAAGCTAGGAGAAAGTGATGTGAAATCGGT
TTTCGATTGATCACTGTTCAATACTTGTAAACAACAactttttttgactt
atctCTGAAACAAATTTATTTAACACTGTTTAACCATTTTCCTTAAATAT
TCTTTCAAGAGCTCTGGTGGCTTTTTGAACCCTGCTTTCAAAGACCCTGC
TTCTACAACCTCTCATCACCAACTACACGAGCCTGAAGGAACTTCAGaac
atttgatctttgaaacggAATCGGCCGATTCATCACCAAAAATAACCGGT
GCCAACCTGAAACGTGGTAAACCAATACAGCGGAATAATACACCACCCTC
AGTGAAACCCGCCCGACCAGCTCCACCCCAAAGACCACCCCGGCCTGCCA
GTAAAATTCAACAAAGTCCTACAAGCTCACCAGCTTTGGCACAAAATAGA
CTTGAAAAACATGACGAAGCTTTTATAGAAACTTCAGAATCACAAGATAG
GAAATCGATGCTCTTACCGAATTCCCCTTTCTATACACCGTCTCAAGATT
TACTTGGCCTGGATCAGTCACTTTTTCATGAGATCGGCTCAAGTTTATCA
GAGGATACACGAGCGAGACTTGCTATAGATTCTCAAAATCAaacccaaca
acaacaacaacaaccagcCTCAACACAGTCAAATCCCTCAAATCCATTTG
TTGCACCGACATCCAGTGATCGTTCTTTATCACCAACAAACCCATTTGCA
CCCTCATCCAATACTTTAACCTCGAACATATCGTCAACTACGGTGCGCGA
TACAAGAGAAATAGACCttgtttttgatgaaaacaCAGATTCGGGTGGTC
TTCACCGCTCACCTGTACTGACACGGGCGACCAGTTTTCCATTGAGGAAC
AGTACAGAGATCTCTGCTGATAGGGGAGATTCGAGAGGCTCAAGTGCGGA
TGTTTCTTCGGAGTTTGATCCTTTTGCGTCTTGTTTTGAAGATGCTAAAA
AGGACTTCCAGTTATCAGACAAAAGGTAAGTTCTATATGGTATTATTAAG
TTAACCAGGGGGAAATATTGCCTCGTTTCCTAAGCAACCCCTGTTTTAAT
ACTCCAAGCGGTACAGATCCTACCCCAGGATAGTGTTAAGTTTTTAGACT
CTGTTATTCCAGCCTCTGTCAACTCGCGGCCCATCTAGTGTTAATGATGT
ATAATAGCAATACTCGAACATgaagtagcgagtttatgtatttgcacttt
tgaggacggtagagtgactgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtaccgtcgtcctcagctggtcaggatctactcaaattagaa
ccttaccgtctccgtcgctgaaaaacacacatacataaactcgctagtgT
CGCTACAACGCCGAAATGTACTTTAAAGTTTGGAGAACCTGGGCGATTTA
GTCTTTGATTTCAAGTCAATTTGACCCTCGTGTGTCGAAAAGGggttgct
ttttaaaaaaatatgttgatGGGTACCTCTGATGTCCTGCAAAACTTTAG
CCTTTATATTAAATTAACAGATAAATACGTAGGTTTAAATTAATATTAGT
CTTATAATAGTTATTATTGAAAATTCtttagagattattttttgacaCTG
TTTTTATAAACGTAAGAATTTCATATGGTATATTAGTAAGTCTTAATGTG
ACAATTATAATCCTTCCttcatcttttcaatattatttATTTCGTTCGAT
TGCTAagcttcatttttaaaaatcctttaaagtttgaacttttagctaaa
ttttcttattaattttttggtctaatttttcaaaaaactgagtAAAATCT
AAATGcttattaaaaatttcatttgaatagatatttaaatttttgtaGAT
CACtataaagaaaattcaaatatttttttgtaagtcATGTCTTTCAGAAT
TTATTCAAGAAGCATATAATATAGGGGTGCTGTCTTTGTCTTTGTCATCT
TGTTTTTTGGTTGAGGGTCTGTGACATAGAGTGTGATCtaaatttataag
aattttCAACATTcacaatagaaatttttaaggtttttctgTTTCTGAAT
TTGAATCAatcattttataaaatttttcttatatatTTATGCACACACAT
ACACACACAATCTCACACAATGTCTTTAATGTCAGAAAAATTCACTTCCA
GTAAATTGCAAACTTACAAACGAGATAATTTggaaacttttattttttcg
aatCAGCCAAAGCAAGTTCCTCGCTGAAATTCAGTTTCGAGAATTTAAAT
TTGTACGAAATTCTTTAGCAaaaatttctgacattaaaatatttttttct
gattttcagtAGTATTGCCTCAGAAGAAGATATTCCTCGACATTTTACAG
TCATTTGACCTCAACATCTTTACAATTGCTATCCTCACTTAAAATGGTAA
TAAACTAGAAAATAAGTTTTTAATATGATAATgcactttgaattttttag
tTTAGCACCATTGCACTTTGATGATATAACCTAGATATTTTGGTATGTGA
TTCTTTTGTTTTNAATATGATAATgcactttgaattttttagtTTAGCAC
CATTGCACTTTGATGATATAACCTAGATATTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004067XLOC_004067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007236-exon-sc0000075-1491911889:385..509TCONS_00007236-exon-sc0000075-1491911889:385..509Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1510915933:385..509TCONS_00007236-exon-sc0000075-1510915933:385..509Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1575043694:385..509TCONS_00007236-exon-sc0000075-1575043694:385..509Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1491911889:4065..4106TCONS_00007236-exon-sc0000075-1491911889:4065..4106Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1510915933:4065..4106TCONS_00007236-exon-sc0000075-1510915933:4065..4106Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1575043694:4065..4106TCONS_00007236-exon-sc0000075-1575043694:4065..4106Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1491911889:4907..4948TCONS_00007236-exon-sc0000075-1491911889:4907..4948Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1510915933:4907..4948TCONS_00007236-exon-sc0000075-1510915933:4907..4948Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1575043694:4907..4948TCONS_00007236-exon-sc0000075-1575043694:4907..4948Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1491911889:6055..6216TCONS_00007236-exon-sc0000075-1491911889:6055..6216Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1510915933:6055..6216TCONS_00007236-exon-sc0000075-1510915933:6055..6216Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1575043694:6055..6216TCONS_00007236-exon-sc0000075-1575043694:6055..6216Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1491911889:6448..6720TCONS_00007236-exon-sc0000075-1491911889:6448..6720Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1510915933:6448..6720TCONS_00007236-exon-sc0000075-1510915933:6448..6720Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1575043694:6448..6720TCONS_00007236-exon-sc0000075-1575043694:6448..6720Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1491911889:7644..8509TCONS_00007236-exon-sc0000075-1491911889:7644..8509Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1510915933:7644..8509TCONS_00007236-exon-sc0000075-1510915933:7644..8509Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1575043694:7644..8509TCONS_00007236-exon-sc0000075-1575043694:7644..8509Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1491911889:10077..10119TCONS_00007236-exon-sc0000075-1491911889:10077..10119Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1510915933:10077..10119TCONS_00007236-exon-sc0000075-1510915933:10077..10119Clytia hemisphaericaexon
TCONS_00007236-exon-sc0000075-1575043694:10077..10119TCONS_00007236-exon-sc0000075-1575043694:10077..10119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:385..10119 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.67074	2.84222	1.15097	0.589267	14.1998	13.3794	9.50881	10.7505	4.56437	8.08824	5.79436	3.44932	5.25894	4.87609	4.66689	8.63377	7.36589	9.34357	3.40543	4.19057	4.96553	5.01139	6.36405	7.43846	7.73159	8.36016	6.22144	5.82946	5.41326	9.37503
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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