XLOC_004067 (gene) - C. hemisphaerica

Overview
NameXLOC_004067
Unique NameXLOC_004067
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000075:385..11807+

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004067 ID=XLOC_004067|Name=XLOC_004067|organism=Clytia hemisphaerica|type=gene|length=11423bp|location=Sequence derived from alignment at sc0000075:385..11807+ (Clytia hemisphaerica)
tggagaaaattaaatttttgtttgatttttttatttcgaatatAAATGGT
TATCTTCTTTTCCAGAAAGGTGGCGGTGCTTTGAAGAAAAGTGTCGAAGG
AAAATACAGTCATTTGAAAGGAATTGTACGTATCATCACACTTGTgtaat
ttttatgtttgactattatttttggacctaccccggtggggtggaggtcc
tataaattaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNcacgtagatatcaattatatatgtgttaaatgcatacccaggtag
gtccataaaaaagtatcacttgttatatAAGAAAATCGTTATAATAGTTA
CCTTTTTATAACGTATCGTAACTCGAAGTATTGGTTAACTTTGAGCCTTC
TTAACAATTGAATATATAGCTTCATCTTTTGTGGAACTATTGGAAACAAT
AATCTGTGAACAAACTCTCAACCTTGACAAGGTCCTTGTCAGTGTTCGCC
ACAAAAGGGATAAATTAATATACTCCTTATTaacatactctcgggtactt
tgattgtttagaatatttCATGGTAAAAAGAATAACCAGAAGcgtcatgt
tttttatttaaaaactgtaTATTCGACCTTCACAACAAGAGGTCATCGTC
AGAGTGTAAAAATCTATcaacaagaaaaatttttagaatttttcgtTTAT
AAAGCTTTATTCGATAAATTGAACAGTTTTGCACAATCAACGATCAAGgg
aacctcgtccccgtgtatcccagggtttatttacgttactgatagaTGCC
AGGCTATTATCTGGCGCTATCAGTaggcatcaaaaagctgataataagCA
GGGAACAAGGAATTTGAGATCAAATTTCGATTACAACTCGTGATATTTCG
TTTAGTAAGTGAATGTATCCATGCAACTCGATTGAAATTGGGTTGTCAGT
TCGGTCTCTAAGCTATTTACTGACTGTTATTCGCTCAGATTCGCTTGCAA
AAGTTTTGAACATTTGAATCCTAAGACCTTCTCGTTTATTCATCATCCGT
TCTCaagacatgttttttttttaatttcaggctTCGGAGATCGAAGTGAA
AGAAGAAATGAAGGATATAAAGGTTAGTATGTGTAACAATTTTCATATCC
TTCTCAAAAAGTTTGTGGTAGGTTTGCGCTTTAATCATGAATTTTACAAA
AAGGAATACAAAAGTGAACCGAAGTGAGGCGAAGTAGTGTAGTGGCCATC
GTTCTTGACTTCCGTGCTGGAGGTCAGGGTTCGTTTCCCACTCGGTGCTG
CGATTCacttggcaagtgaatgtaccttggcccgggtcaacccataccat
gtgaggggaatagggtaccatcactctgatacaagagtatggggagaTAT
GCTGGACATGAATGTGGTGTGGTGTGGTGATGGTACTCATATGTTCAATA
CCTGCGAGAACGCAAGGCTCTCCCGTAATGTTCgagtatcatcatcgata
cagcaCGGCTCTGTTGTGTCGGgagcacagagtacaatgtctggtaagcg
ctgtgatttccctatctaggggtaggaaacatcccgggatagggcccggt
ccgatgatatcggagggtcAGCTTCTCTTCTCAGCTTCTCtcatacaaaa
aagaaaaactaactAGAAATTATTAGACCTGACAataaataattcagaat
ataaTAACCAAAgggttaaaatttattttcattgttgttTTACTATAAAA
TTTTGGAAACAAGATAAGCAATAACTTGTGCAGGGGCTATGGGGCAATTA
AAGCATTTTTACCCTAATTCTTAATACTTATTGCCTCGGCCAAGCTAAGT
AATACTTTCATATTGAATACTGTGATATTCAAAATGGTTATTCTAAAGTA
AAAATTCCGTttctattttcagaaaaagttaaCGGATAAGATGAAGAAGA
GGAAAAAGGAAAAGGTATTTTAACCACGCTTTCCGCTCACAAATACCTTA
TATTtccttgaatatttttattttttttttattttccgattTATTTAACG
TTGGTGTTACATAGTTATAATTAAATACTAATTTATACCAACTATTGACA
AAAATGATTATATGAAAAGATAATTTCTATAAAACTATATAATAAAGtga
accgtacatcctgtgcccaagttcaggagttgccataaagccattatggt
aataaccgggagggcacattgctatacattgtNATAAAACTATATAATAA
AGtgaaccgtacatcctgtgcccaagttcaggagttgccataaagccatt
atggtaataaccgggagggcacattacTATACATTGTATAAAGTGAAACT
ATAAATTTTTAggtacatattttacaaaggCAAATATTTGTTAGGTTTAT
TACATTAAGTGAGGATTTAAATGAATCGATGGAAGGCTTAAGCTTAGTAT
TTTCGGGAATTTGGTTCCAAAGTAAGCTTCCACGAAATAAAAAGGATTGC
GTTCCGAAACGATGGGAGGTAGCCTTGGGTATTGACATCaatatgaaata
tgaaatttcttAATGCTACAAATGAATATGCGTGTTTTCATTCCTATGGT
CNATAAAAAGGATTGCGTTCCGAAACGATGGGAGGTAGCCTTGGGTATTG
ACATCaatatgaaatatgaaatttcttAATGCTACAAATGAATACGCGTG
TTTTAAATGGAATTCATACCCATGGTGGTTTCAATGTTTGTTTAGGATTC
CAGTGTCCTTTTCCATGAGGAACTTTTAGGTATTGATTATCTACTTTTTC
GATGGTAAGTTGCCGGATCTGTAAACGAGTCGATTTGGCAATTGACGCCT
TTGCAACGATGAAGTTTAGTCGAAGAATGGAATCTTTTTTCCTCCGTAAG
CGGGGTGGTCTgcgtaatttttaaacaaatgCTAGATTGATTGGAAATGC
GTAACATTAAAGCCTCATTTTCTCTTACCTAAGTAAGCTGAAAAATTCGA
TCGTTGCCTTCGGCTATATCTTATTCACCTCCTTTTACTTGTCATTTAAG
AACACGATTTCTTCTTTCAGGCTGAACGTAAAAAAGAGACTGACTCTGTG
GACCAAGTGGCGACGGTCAAAAGGAACAACTCGATgccaatgaaaaataa
caacaaaatcTTACATGCTCCTCAACGTCATCAAACTGTATCTGATAGAC
ACTCATTATATGCTTCCCTACCAAGAAAAGATGTAAGCTATTGGACGCTT
CTTTGAAGCTTATCCTAATTCATTATCAAACGAATGAAGTAATTTTCAGG
TGTCCGAAGTCTAGAAGATTGCTCATTTTTCCTCATGATAATAGTTTGGA
TAGCGAGAGCTTTTCATTTATGGCAAATGTAAAACGTTATTAGCTCATGT
TTCAAACGTCTTTTCAAGTCTTCCTCTAATTGGGAAACCTCTCCATTTCT
ATTTATCCGACAGGTCACATCACCTGGTAAAGCGCCCCCACCTCGGCCGC
CACGCCCTAAGAACGCCCATCTATCGCCTGGAGGCGTTGTCAACAAAGAA
GAATGTCATTCAGTAGAGTTACCAAGGAAAACATTAGGCGTGGATTCAAC
ATCTTCAACAACTTTACCGCAGTCGAACAGTGAAGGGAATATTGTTGATT
TAATGGAGATGTCCTCTTCATCCGCATCTTCCTCACTCTCCTCGTTTTCG
AGTTGTTCACTCGCCAGATCGTTAGATTCACTCGATGTAAGTTTTGACTA
TTTTCTTTTGATGACTAATGTTAAGTTTCCTTGCTGTTAGTATATTGATG
GGTAGAAGAAACCATCTTGGCACTTTCTATCGAGTTATAAATGTCGTTTC
ATGATTATTATAATAACTTAATATTATCACGTGTCGTTTAACCGCTAGTT
TAACCTTATggtaggcgaaaataaaaaaatgtagtgtttccggaaaccgg
ccgggtgaaaaaataataattttctgacccGGACGCAGATTTCGTTAGTa
gagttctatttcaatgatcttaaattatcaaaaaaagtttttttccggcc
ggccgcacgagagattttttctttgacccgcattccggaaacactacatt
tttttattttcgccttactTTAGGTATTTAGGTCCTTGCTTAAGACTTTC
TTTCAAGATCTTCAAATTCTTTAGATATGAGTTTTATGTCGATAGTTTCT
TTAAGTATTTATAGAACAGGAATAGTAAATTTGTTCTTTAGAGAGGTTCC
TAAAATTCAGATTATATTTCCAGACGTTTTGATCATATATTTTTAAGAGT
TTCTTTAGATTGAAACGATTATCCAGCTTGCAGCGAAGAGCGGGTTATAC
AATGTTTCAAACAGTAATGGTGAGTCCGTGTCTGATAAAAACTAGGCTTG
AAAAGCAGAAAGAACAGTTTGAAGAGATTTTTTGATTAACAGTTAAAGAT
GACTTGAACAAATTGCAGTAGATTCGACCAGGTTTACTTATATGTTTTTC
CAGGTTAACCAAAGTATGAAGAAGCTAGGAGAAAGTGATGTGAAATCGGT
TTTCGATTGATCACTGTTCAATACTTGTAAACAACAactttttttgactt
atctCTGAAACAAATTTATTTAACACTGTTTAACCATTTTCCTTAAATAT
TCTTTCAAGAGCTCTGGTGGCTTTTTGAACCCTGCTTTCAAAGACCCTGC
TTCTACAACCTCTCATCACCAACTACACGAGCCTGAAGGAACTTCAGaac
atttgatctttgaaacggAATCGGCCGATTCATCACCAAAAATAACCGGT
GCCAACCTGAAACGTGGTAAACCAATACAGCGGAATAATACACCACCCTC
AGTGAAACCCGCCCGACCAGCTCCACCCCAAAGACCACCCCGGCCTGCCA
GTAAAATTCAACAAAGTCCTACAAGCTCACCAGCTTTGGCACAAAATAGA
CTTGAAAAACATGACGAAGCTTTTATAGAAACTTCAGAATCACAAGATAG
GAAATCGATGCTCTTACCGAATTCCCCTTTCTATACACCGTCTCAAGATT
TACTTGGCCTGGATCAGTCACTTTTTCATGAGATCGGCTCAAGTTTATCA
GAGGATACACGAGCGAGACTTGCTATAGATTCTCAAAATCAaacccaaca
acaacaacaacaaccagcCTCAACACAGTCAAATCCCTCAAATCCATTTG
TTGCACCGACATCCAGTGATCGTTCTTTATCACCAACAAACCCATTTGCA
CCCTCATCCAATACTTTAACCTCGAACATATCGTCAACTACGGTGCGCGA
TACAAGAGAAATAGACCttgtttttgatgaaaacaCAGATTCGGGTGGTC
TTCACCGCTCACCTGTACTGACACGGGCGACCAGTTTTCCATTGAGGAAC
AGTACAGAGATCTCTGCTGATAGGGGAGATTCGAGAGGCTCAAGTGCGGA
TGTTTCTTCGGAGTTTGATCCTTTTGCGTCTTGTTTTGAAGATGCTAAAA
AGGACTTCCAGTTATCAGACAAAAGGTAAGTTCTATATGGTATTATTAAG
TTAACCAGGGGGAAATATTGCCTCGTTTCCTAAGCAACCCCTGTTTTAAT
ACTCCAAGCGGTACAGATCCTACCCCAGGATAGTGTTAAGTTTTTAGACT
CTGTTATTCCAGCCTCTGTCAACTCGCGGCCCATCTAGTGTTAATGATGT
ATAATAGCAATACTCGAACATgaagtagcgagtttatgtatttgcacttt
tgaggacggtagagtgactgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtaccgtcgtcctcagctggtcaggatctactcaaattagaa
ccttaccgtctccgtcgctgaaaaacacacatacataaactcgctagtgT
CGCTACAACGCCGAAATGTACTTTAAAGTTTGGAGAACCTGGGCGATTTA
GTCTTTGATTTCAAGTCAATTTGACCCTCGTGTGTCGAAAAGGggttgct
ttttaaaaaaatatgttgatGGGTACCTCTGATGTCCTGCAAAACTTTAG
CCTTTATATTAAATTAACAGATAAATACGTAGGTTTAAATTAATATTAGT
CTTATAATAGTTATTATTGAAAATTCtttagagattattttttgacaCTG
TTTTTATAAACGTAAGAATTTCATATGGTATATTAGTAAGTCTTAATGTG
ACAATTATAATCCTTCCttcatcttttcaatattatttATTTCGTTCGAT
TGCTAagcttcatttttaaaaatcctttaaagtttgaacttttagctaaa
ttttcttattaattttttggtctaatttttcaaaaaactgagtAAAATCT
AAATGcttattaaaaatttcatttgaatagatatttaaatttttgtaGAT
CACtataaagaaaattcaaatatttttttgtaagtcATGTCTTTCAGAAT
TTATTCAAGAAGCATATAATATAGGGGTGCTGTCTTTGTCTTTGTCATCT
TGTTTTTTGGTTGAGGGTCTGTGACATAGAGTGTGATCtaaatttataag
aattttCAACATTcacaatagaaatttttaaggtttttctgTTTCTGAAT
TTGAATCAatcattttataaaatttttcttatatatTTATGCACACACAT
ACACACACAATCTCACACAATGTCTTTAATGTCAGAAAAATTCACTTCCA
GTAAATTGCAAACTTACAAACGAGATAATTTggaaacttttattttttcg
aatCAGCCAAAGCAAGTTCCTCGCTGAAATTCAGTTTCGAGAATTTAAAT
TTGTACGAAATTCTTTAGCAaaaatttctgacattaaaatatttttttct
gattttcagtAGTATTGCCTCAGAAGAAGATATTCCTCGACATTTTACAG
TCATTTGACCTCAACATCTTTACAATTGCTATCCTCACTTAAAATGGTAA
TAAACTAGAAAATAAGTTTTTAATATGATAATgcactttgaattttttag
tTTAGCACCATTGCACTTTGATGATATAACCTAGATATTTTGGTATGTGA
TTCTTTTGTTTTNAATATGATAATgcactttgaattttttagtTTAGCAC
CATTGCACTTTGATGATATAACCTAGATATTTTGGTAtgtgattcttttg
tttttgtttcatggggATATACATAAAATTTTTGCTTATGCTGCCATATA
TGTAGAAAGAATTCAAAGATTTCGACGGATTCcacgagaaaaaaaataag
gaacAACTCAGTAAGGACTGTAAAAACTACCCGGAAAGGTCATTCCACAC
TTAAATCTTTCTCAATTTTTAATTCCATTTAATTTTAACCAATGACTAAT
CATGCTAACCGCTAAACTAACACCTTTCTCACTTTCAGCCGACGGTTGAt
gaaaaatcataaccatctcTTTCGTACGGTTTCTTTACGTCATTTGCATC
GACAAAAACGACAACCTAACGACAATATAACGACAAACGACGATATTGAC
GGTTACAACGATTTTCGTTTTAGAAGGACTAAATCTTTCTACGAGGAAAT
TTGATAACATTACTTGACGTCTGACTTCATTTTGACTATGACTTGACATC
ATACTGAATTTCCACCTGACAAACTATGTGACTTTAATGTGAGAACTGAC
TTCAGACAAAGATTTGTGGTGGGGGTGGGTTTATAAAGATTTTGAGTATT
ACTGTTTGaccaattgaaaatttagaattcaTGAAACAcagttattttga
aaaattattcgGAGTTTATTCAGCCTTCATGAAATAACTTTGATTTGATA
ATAAACAGGATAACtaaattccttttttttcatcttaaccctttaagtgc
cacggtcaaatttttctaagttttttaaagaaaatcgccagttcaaactt
taaaggcttaaaTCTTGATTACATCTTGCTTATATCTATCTCCTATAGCT
TgttcatagctcgttggatagcttagggTCTCCTCTTTCTTCATCACAAT
ACTCTCTCGTCACAACATCATACCGCTCTTATCAATCATGCATCACGTTT
TATGACAAACAGGGGCttctaaaatattattttattcaattgttATAGCT
TGTTTTGTTACGTACGTAGGGATTCTTAGAATATTTTATCAGCCTTCTTT
TTTGGTCAGTTGACCTTACTTAGACAGGGTAAAATGCGCTAAATGAGATA
AATGATTNTTTTGGTCAGTTGACCTTACTTAGACAGGGTAAAATGCGCTA
AATGAGATAAATGATTACATTACCATTATTTTATtcgtttaaaattttat
ttaatattataCAGTTTACAATTACTTTTTGTGAAGATttcaaccactga
cctttatatatccctggaccaagttactcaatgccggccaagcaaaattt
tatgataagagttttttttgaaatcggtacccgcggagagagcgctagat
ccAGTTTCGCTTGTACAataatgatgtagcgccgtttgtcgttaggcaaa
tCTTCAAACACTACAacggcttctttgcgggtaccaatttcaaaaaaact
tctatCAAAGATGGctgatatagcttggtccagggatatataaaggtcag
tgatttcAACAGAATTTTATAGAGCATTTTATTATTCCTTAACGTAGAGT
ttagtaattatttttttgtacaaTTGTTATGAATACTGACACATTTATAT
GAATGGCAATTAAAAAGGTCATTTCGATATTGTCTTAGGACTTAAGACCG
GTCTCCcctttcgcgcgaaatgagcgaaaactttttaacgtttttgtaag
gtcattggtcggttgaaaatgaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007236TCONS_00007236Clytia hemisphaericatranscript
TCONS_00007237TCONS_00007237Clytia hemisphaericatranscript
TCONS_00007238TCONS_00007238Clytia hemisphaericatranscript
TCONS_00007239TCONS_00007239Clytia hemisphaericatranscript
TCONS_00007240TCONS_00007240Clytia hemisphaericatranscript
TCONS_00007241TCONS_00007241Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:385..11807 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.42	10.21	3.14	1.99	30.48	24.92	22.71	25.43	11.9	19.2	12.81	7.41	13.35	11.43	12.53	14.55	20.08	21.85	10.36	14.36	12.95	14.41	20.05	20.27	19.16	20.66	17.53	16.36	29.59	29.17