TCONS_00007237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007237
Unique NameTCONS_00007237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007237 ID=TCONS_00007237|Name=TCONS_00007237|organism=Clytia hemisphaerica|type=transcript|length=1699bp
AAATGGTTATCTTCTTTTCCAGAAAGGTGGCGGTGCTTTGAAGAAAAGTG
TCGAAGGAAAATACAGTCATTTGAAAGGAATTgctTCGGAGATCGAAGTG
AAAGAAGAAATGAAGGATATAAAGaaaaagttaaCGGATAAGATGAAGAA
GAGGAAAAAGGAAAAGGCTGAACGTAAAAAAGAGACTGACTCTGTGGACC
AAGTGGCGACGGTCAAAAGGAACAACTCGATgccaatgaaaaataacaac
aaaatcTTACATGCTCCTCAACGTCATCAAACTGTATCTGATAGACACTC
ATTATATGCTTCCCTACCAAGAAAAGATGTCACATCACCTGGTAAAGCGC
CCCCACCTCGGCCGCCACGCCCTAAGAACGCCCATCTATCGCCTGGAGGC
GTTGTCAACAAAGAAGAATGTCATTCAGTAGAGTTACCAAGGAAAACATT
AGGCGTGGATTCAACATCTTCAACAACTTTACCGCAGTCGAACAGTGAAG
GGAATATTGTTGATTTAATGGAGATGTCCTCTTCATCCGCATCTTCCTCA
CTCTCCTCGTTTTCGAGTTGTTCACTCGCCAGATCGTTAGATTCACTCGA
TAGCTCTGGTGGCTTTTTGAACCCTGCTTTCAAAGACCCTGCTTCTACAA
CCTCTCATCACCAACTACACGAGCCTGAAGGAACTTCAGaacatttgatc
tttgaaacggAATCGGCCGATTCATCACCAAAAATAACCGGTGCCAACCT
GAAACGTGGTAAACCAATACAGCGGAATAATACACCACCCTCAGTGAAAC
CCGCCCGACCAGCTCCACCCCAAAGACCACCCCGGCCTGCCAGTAAAATT
CAACAAAGTCCTACAAGCTCACCAGCTTTGGCACAAAATAGACTTGAAAA
ACATGACGAAGCTTTTATAGAAACTTCAGAATCACAAGATAGGAAATCGA
TGCTCTTACCGAATTCCCCTTTCTATACACCGTCTCAAGATTTACTTGGC
CTGGATCAGTCACTTTTTCATGAGATCGGCTCAAGTTTATCAGAGGATAC
ACGAGCGAGACTTGCTATAGATTCTCAAAATCAaacccaacaacaacaac
aacaaccagcCTCAACACAGTCAAATCCCTCAAATCCATTTGTTGCACCG
ACATCCAGTGATCGTTCTTTATCACCAACAAACCCATTTGCACCCTCATC
CAATACTTTAACCTCGAACATATCGTCAACTACGGTGCGCGATACAAGAG
AAATAGACCttgtttttgatgaaaacaCAGATTCGGGTGGTCTTCACCGC
TCACCTGTACTGACACGGGCGACCAGTTTTCCATTGAGGAACAGTACAGA
GATCTCTGCTGATAGGGGAGATTCGAGAGGCTCAAGTGCGGATGTTTCTT
CGGAGTTTGATCCTTTTGCGTCTTGTTTTGAAGATGCTAAAAAGGACTTC
CAGTTATCAGACAAAAGGTAAGTTCTATATGGTATTATTAAGTTAACCAG
GGGGAAATATTGCCTCGTTTCCTAAGCAACCCCTGTTTTAATACTCCAAG
CGGTACAGATCCTACCCCAGGATAGTGTTAAGTTTTTAGACTCTGTTATT
CCAGCCTCTGTCAACTCGCGGCCCATCTAGTGTTAATGATGTATAATAGC
AATACTCGAACATgaagtagcgagtttatgtatttgcacttttgaggac
Run BLAST on NCBI

transcript from alignment at sc0000075:428..8741+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007237 ID=TCONS_00007237|Name=TCONS_00007237|organism=Clytia hemisphaerica|type=transcript|length=8314bp|location=Sequence derived from alignment at sc0000075:428..8741+ (Clytia hemisphaerica)
AAATGGTTATCTTCTTTTCCAGAAAGGTGGCGGTGCTTTGAAGAAAAGTG
TCGAAGGAAAATACAGTCATTTGAAAGGAATTGTACGTATCATCACACTT
GTgtaatttttatgtttgactattatttttggacctaccccggtggggtg
gaggtcctataaattaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNcacgtagatatcaattatatatgtgttaaatgcatacc
caggtaggtccataaaaaagtatcacttgttatatAAGAAAATCGTTATA
ATAGTTACCTTTTTATAACGTATCGTAACTCGAAGTATTGGTTAACTTTG
AGCCTTCTTAACAATTGAATATATAGCTTCATCTTTTGTGGAACTATTGG
AAACAATAATCTGTGAACAAACTCTCAACCTTGACAAGGTCCTTGTCAGT
GTTCGCCACAAAAGGGATAAATTAATATACTCCTTATTaacatactctcg
ggtactttgattgtttagaatatttCATGGTAAAAAGAATAACCAGAAGc
gtcatgttttttatttaaaaactgtaTATTCGACCTTCACAACAAGAGGT
CATCGTCAGAGTGTAAAAATCTATcaacaagaaaaatttttagaattttt
cgtTTATAAAGCTTTATTCGATAAATTGAACAGTTTTGCACAATCAACGA
TCAAGggaacctcgtccccgtgtatcccagggtttatttacgttactgat
agaTGCCAGGCTATTATCTGGCGCTATCAGTaggcatcaaaaagctgata
ataagCAGGGAACAAGGAATTTGAGATCAAATTTCGATTACAACTCGTGA
TATTTCGTTTAGTAAGTGAATGTATCCATGCAACTCGATTGAAATTGGGT
TGTCAGTTCGGTCTCTAAGCTATTTACTGACTGTTATTCGCTCAGATTCG
CTTGCAAAAGTTTTGAACATTTGAATCCTAAGACCTTCTCGTTTATTCAT
CATCCGTTCTCaagacatgttttttttttaatttcaggctTCGGAGATCG
AAGTGAAAGAAGAAATGAAGGATATAAAGGTTAGTATGTGTAACAATTTT
CATATCCTTCTCAAAAAGTTTGTGGTAGGTTTGCGCTTTAATCATGAATT
TTACAAAAAGGAATACAAAAGTGAACCGAAGTGAGGCGAAGTAGTGTAGT
GGCCATCGTTCTTGACTTCCGTGCTGGAGGTCAGGGTTCGTTTCCCACTC
GGTGCTGCGATTCacttggcaagtgaatgtaccttggcccgggtcaaccc
ataccatgtgaggggaatagggtaccatcactctgatacaagagtatggg
gagaTATGCTGGACATGAATGTGGTGTGGTGTGGTGATGGTACTCATATG
TTCAATACCTGCGAGAACGCAAGGCTCTCCCGTAATGTTCgagtatcatc
atcgatacagcaCGGCTCTGTTGTGTCGGgagcacagagtacaatgtctg
gtaagcgctgtgatttccctatctaggggtaggaaacatcccgggatagg
gcccggtccgatgatatcggagggtcAGCTTCTCTTCTCAGCTTCTCtca
tacaaaaaagaaaaactaactAGAAATTATTAGACCTGACAataaataat
tcagaatataaTAACCAAAgggttaaaatttattttcattgttgttTTAC
TATAAAATTTTGGAAACAAGATAAGCAATAACTTGTGCAGGGGCTATGGG
GCAATTAAAGCATTTTTACCCTAATTCTTAATACTTATTGCCTCGGCCAA
GCTAAGTAATACTTTCATATTGAATACTGTGATATTCAAAATGGTTATTC
TAAAGTAAAAATTCCGTttctattttcagaaaaagttaaCGGATAAGATG
AAGAAGAGGAAAAAGGAAAAGGTATTTTAACCACGCTTTCCGCTCACAAA
TACCTTATATTtccttgaatatttttattttttttttattttccgattTA
TTTAACGTTGGTGTTACATAGTTATAATTAAATACTAATTTATACCAACT
ATTGACAAAAATGATTATATGAAAAGATAATTTCTATAAAACTATATAAT
AAAGtgaaccgtacatcctgtgcccaagttcaggagttgccataaagcca
ttatggtaataaccgggagggcacattgctatacattgtNATAAAACTAT
ATAATAAAGtgaaccgtacatcctgtgcccaagttcaggagttgccataa
agccattatggtaataaccgggagggcacattacTATACATTGTATAAAG
TGAAACTATAAATTTTTAggtacatattttacaaaggCAAATATTTGTTA
GGTTTATTACATTAAGTGAGGATTTAAATGAATCGATGGAAGGCTTAAGC
TTAGTATTTTCGGGAATTTGGTTCCAAAGTAAGCTTCCACGAAATAAAAA
GGATTGCGTTCCGAAACGATGGGAGGTAGCCTTGGGTATTGACATCaata
tgaaatatgaaatttcttAATGCTACAAATGAATATGCGTGTTTTCATTC
CTATGGTCNATAAAAAGGATTGCGTTCCGAAACGATGGGAGGTAGCCTTG
GGTATTGACATCaatatgaaatatgaaatttcttAATGCTACAAATGAAT
ACGCGTGTTTTAAATGGAATTCATACCCATGGTGGTTTCAATGTTTGTTT
AGGATTCCAGTGTCCTTTTCCATGAGGAACTTTTAGGTATTGATTATCTA
CTTTTTCGATGGTAAGTTGCCGGATCTGTAAACGAGTCGATTTGGCAATT
GACGCCTTTGCAACGATGAAGTTTAGTCGAAGAATGGAATCTTTTTTCCT
CCGTAAGCGGGGTGGTCTgcgtaatttttaaacaaatgCTAGATTGATTG
GAAATGCGTAACATTAAAGCCTCATTTTCTCTTACCTAAGTAAGCTGAAA
AATTCGATCGTTGCCTTCGGCTATATCTTATTCACCTCCTTTTACTTGTC
ATTTAAGAACACGATTTCTTCTTTCAGGCTGAACGTAAAAAAGAGACTGA
CTCTGTGGACCAAGTGGCGACGGTCAAAAGGAACAACTCGATgccaatga
aaaataacaacaaaatcTTACATGCTCCTCAACGTCATCAAACTGTATCT
GATAGACACTCATTATATGCTTCCCTACCAAGAAAAGATGTAAGCTATTG
GACGCTTCTTTGAAGCTTATCCTAATTCATTATCAAACGAATGAAGTAAT
TTTCAGGTGTCCGAAGTCTAGAAGATTGCTCATTTTTCCTCATGATAATA
GTTTGGATAGCGAGAGCTTTTCATTTATGGCAAATGTAAAACGTTATTAG
CTCATGTTTCAAACGTCTTTTCAAGTCTTCCTCTAATTGGGAAACCTCTC
CATTTCTATTTATCCGACAGGTCACATCACCTGGTAAAGCGCCCCCACCT
CGGCCGCCACGCCCTAAGAACGCCCATCTATCGCCTGGAGGCGTTGTCAA
CAAAGAAGAATGTCATTCAGTAGAGTTACCAAGGAAAACATTAGGCGTGG
ATTCAACATCTTCAACAACTTTACCGCAGTCGAACAGTGAAGGGAATATT
GTTGATTTAATGGAGATGTCCTCTTCATCCGCATCTTCCTCACTCTCCTC
GTTTTCGAGTTGTTCACTCGCCAGATCGTTAGATTCACTCGATGTAAGTT
TTGACTATTTTCTTTTGATGACTAATGTTAAGTTTCCTTGCTGTTAGTAT
ATTGATGGGTAGAAGAAACCATCTTGGCACTTTCTATCGAGTTATAAATG
TCGTTTCATGATTATTATAATAACTTAATATTATCACGTGTCGTTTAACC
GCTAGTTTAACCTTATggtaggcgaaaataaaaaaatgtagtgtttccgg
aaaccggccgggtgaaaaaataataattttctgacccGGACGCAGATTTC
GTTAGTagagttctatttcaatgatcttaaattatcaaaaaaagtttttt
tccggccggccgcacgagagattttttctttgacccgcattccggaaaca
ctacatttttttattttcgccttactTTAGGTATTTAGGTCCTTGCTTAA
GACTTTCTTTCAAGATCTTCAAATTCTTTAGATATGAGTTTTATGTCGAT
AGTTTCTTTAAGTATTTATAGAACAGGAATAGTAAATTTGTTCTTTAGAG
AGGTTCCTAAAATTCAGATTATATTTCCAGACGTTTTGATCATATATTTT
TAAGAGTTTCTTTAGATTGAAACGATTATCCAGCTTGCAGCGAAGAGCGG
GTTATACAATGTTTCAAACAGTAATGGTGAGTCCGTGTCTGATAAAAACT
AGGCTTGAAAAGCAGAAAGAACAGTTTGAAGAGATTTTTTGATTAACAGT
TAAAGATGACTTGAACAAATTGCAGTAGATTCGACCAGGTTTACTTATAT
GTTTTTCCAGGTTAACCAAAGTATGAAGAAGCTAGGAGAAAGTGATGTGA
AATCGGTTTTCGATTGATCACTGTTCAATACTTGTAAACAACAacttttt
ttgacttatctCTGAAACAAATTTATTTAACACTGTTTAACCATTTTCCT
TAAATATTCTTTCAAGAGCTCTGGTGGCTTTTTGAACCCTGCTTTCAAAG
ACCCTGCTTCTACAACCTCTCATCACCAACTACACGAGCCTGAAGGAACT
TCAGaacatttgatctttgaaacggAATCGGCCGATTCATCACCAAAAAT
AACCGGTGCCAACCTGAAACGTGGTAAACCAATACAGCGGAATAATACAC
CACCCTCAGTGAAACCCGCCCGACCAGCTCCACCCCAAAGACCACCCCGG
CCTGCCAGTAAAATTCAACAAAGTCCTACAAGCTCACCAGCTTTGGCACA
AAATAGACTTGAAAAACATGACGAAGCTTTTATAGAAACTTCAGAATCAC
AAGATAGGAAATCGATGCTCTTACCGAATTCCCCTTTCTATACACCGTCT
CAAGATTTACTTGGCCTGGATCAGTCACTTTTTCATGAGATCGGCTCAAG
TTTATCAGAGGATACACGAGCGAGACTTGCTATAGATTCTCAAAATCAaa
cccaacaacaacaacaacaaccagcCTCAACACAGTCAAATCCCTCAAAT
CCATTTGTTGCACCGACATCCAGTGATCGTTCTTTATCACCAACAAACCC
ATTTGCACCCTCATCCAATACTTTAACCTCGAACATATCGTCAACTACGG
TGCGCGATACAAGAGAAATAGACCttgtttttgatgaaaacaCAGATTCG
GGTGGTCTTCACCGCTCACCTGTACTGACACGGGCGACCAGTTTTCCATT
GAGGAACAGTACAGAGATCTCTGCTGATAGGGGAGATTCGAGAGGCTCAA
GTGCGGATGTTTCTTCGGAGTTTGATCCTTTTGCGTCTTGTTTTGAAGAT
GCTAAAAAGGACTTCCAGTTATCAGACAAAAGGTAAGTTCTATATGGTAT
TATTAAGTTAACCAGGGGGAAATATTGCCTCGTTTCCTAAGCAACCCCTG
TTTTAATACTCCAAGCGGTACAGATCCTACCCCAGGATAGTGTTAAGTTT
TTAGACTCTGTTATTCCAGCCTCTGTCAACTCGCGGCCCATCTAGTGTTA
ATGATGTATAATAGCAATACTCGAACATgaagtagcgagtttatgtattt
gcacttttgaggac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004067XLOC_004067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007237-exon-sc0000075-1491911889:428..509TCONS_00007237-exon-sc0000075-1491911889:428..509Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1510915933:428..509TCONS_00007237-exon-sc0000075-1510915933:428..509Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1575043694:428..509TCONS_00007237-exon-sc0000075-1575043694:428..509Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1491911889:4065..4106TCONS_00007237-exon-sc0000075-1491911889:4065..4106Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1510915933:4065..4106TCONS_00007237-exon-sc0000075-1510915933:4065..4106Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1575043694:4065..4106TCONS_00007237-exon-sc0000075-1575043694:4065..4106Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1491911889:4907..4948TCONS_00007237-exon-sc0000075-1491911889:4907..4948Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1510915933:4907..4948TCONS_00007237-exon-sc0000075-1510915933:4907..4948Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1575043694:4907..4948TCONS_00007237-exon-sc0000075-1575043694:4907..4948Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1491911889:6055..6216TCONS_00007237-exon-sc0000075-1491911889:6055..6216Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1510915933:6055..6216TCONS_00007237-exon-sc0000075-1510915933:6055..6216Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1575043694:6055..6216TCONS_00007237-exon-sc0000075-1575043694:6055..6216Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1491911889:6448..6720TCONS_00007237-exon-sc0000075-1491911889:6448..6720Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1510915933:6448..6720TCONS_00007237-exon-sc0000075-1510915933:6448..6720Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1575043694:6448..6720TCONS_00007237-exon-sc0000075-1575043694:6448..6720Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1491911889:7644..8741TCONS_00007237-exon-sc0000075-1491911889:7644..8741Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1510915933:7644..8741TCONS_00007237-exon-sc0000075-1510915933:7644..8741Clytia hemisphaericaexon
TCONS_00007237-exon-sc0000075-1575043694:7644..8741TCONS_00007237-exon-sc0000075-1575043694:7644..8741Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:428..8741 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.81741	5.02324	0.898267	0.620386	10.1586	7.72922	9.00655	10.3587	5.75494	8.72115	4.38614	2.78095	5.6993	4.59551	6.62575	4.86359	10.855	9.86642	4.61967	7.42733	4.56092	5.72132	9.09779	8.47323	8.55083	8.57768	6.9166	7.13676	19.9098	15.6092
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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