TCONS_00007239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007239
Unique NameTCONS_00007239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007239 ID=TCONS_00007239|Name=TCONS_00007239|organism=Clytia hemisphaerica|type=transcript|length=2989bp
AAATGGTTATCTTCTTTTCCAGAAAGGTGGCGGTGCTTTGAAGAAAAGTG
TCGAAGGAAAATACAGTCATTTGAAAGGAATTgctTCGGAGATCGAAGTG
AAAGAAGAAATGAAGGATATAAAGaaaaagttaaCGGATAAGATGAAGAA
GAGGAAAAAGGAAAAGGCTGAACGTAAAAAAGAGACTGACTCTGTGGACC
AAGTGGCGACGGTCAAAAGGAACAACTCGATgccaatgaaaaataacaac
aaaatcTTACATGCTCCTCAACGTCATCAAACTGTATCTGATAGACACTC
ATTATATGCTTCCCTACCAAGAAAAGATGTCACATCACCTGGTAAAGCGC
CCCCACCTCGGCCGCCACGCCCTAAGAACGCCCATCTATCGCCTGGAGGC
GTTGTCAACAAAGAAGAATGTCATTCAGTAGAGTTACCAAGGAAAACATT
AGGCGTGGATTCAACATCTTCAACAACTTTACCGCAGTCGAACAGTGAAG
GGAATATTGTTGATTTAATGGAGATGTCCTCTTCATCCGCATCTTCCTCA
CTCTCCTCGTTTTCGAGTTGTTCACTCGCCAGATCGTTAGATTCACTCGA
TAGCTCTGGTGGCTTTTTGAACCCTGCTTTCAAAGACCCTGCTTCTACAA
CCTCTCATCACCAACTACACGAGCCTGAAGGAACTTCAGaacatttgatc
tttgaaacggAATCGGCCGATTCATCACCAAAAATAACCGGTGCCAACCT
GAAACGTGGTAAACCAATACAGCGGAATAATACACCACCCTCAGTGAAAC
CCGCCCGACCAGCTCCACCCCAAAGACCACCCCGGCCTGCCAGTAAAATT
CAACAAAGTCCTACAAGCTCACCAGCTTTGGCACAAAATAGACTTGAAAA
ACATGACGAAGCTTTTATAGAAACTTCAGAATCACAAGATAGGAAATCGA
TGCTCTTACCGAATTCCCCTTTCTATACACCGTCTCAAGATTTACTTGGC
CTGGATCAGTCACTTTTTCATGAGATCGGCTCAAGTTTATCAGAGGATAC
ACGAGCGAGACTTGCTATAGATTCTCAAAATCAaacccaacaacaacaac
aacaaccagcCTCAACACAGTCAAATCCCTCAAATCCATTTGTTGCACCG
ACATCCAGTGATCGTTCTTTATCACCAACAAACCCATTTGCACCCTCATC
CAATACTTTAACCTCGAACATATCGTCAACTACGGTGCGCGATACAAGAG
AAATAGACCttgtttttgatgaaaacaCAGATTCGGGTGGTCTTCACCGC
TCACCTGTACTGACACGGGCGACCAGTTTTCCATTGAGGAACAGTACAGA
GATCTCTGCTGATAGGGGAGATTCGAGAGGCTCAAGTGCGGATGTTTCTT
CGGAGTTTGATCCTTTTGCGTCTTGTTTTGAAGATGCTAAAAAGGACTTC
CAGTTATCAGACAAAAGtAGTATTGCCTCAGAAGAAGATATTCCTCGACA
TTTTACAGTCATTTGACCTCAACATCTTTACAATTGCTATCCTCACTTAA
AATGCCGACGGTTGAtgaaaaatcataaccatctcTTTCGTACGGTTTCT
TTACGTCATTTGCATCGACAAAAACGACAACCTAACGACAATATAACGAC
AAACGACGATATTGACGGTTACAACGATTTTCGTTTTAGAAGGACTAAAT
CTTTCTACGAGGAAATTTGATAACATTACTTGACGTCTGACTTCATTTTG
ACTATGACTTGACATCATACTGAATTTCCACCTGACAAACTATGTGACTT
TAATGTGAGAACTGACTTCAGACAAAGATTTGTGGTGGGGGTGGGTTTAT
AAAGATTTTGAGTATTACTGTTTGaccaattgaaaatttagaattcaTGA
AACAcagttattttgaaaaattattcgGAGTTTATTCAGCCTTCATGAAA
TAACTTTGATTTGATAATAAACAGGATAACtaaattccttttttttcatc
ttaaccctttaagtgccacggtcaaatttttctaagttttttaaagaaaa
tcgccagttcaaactttaaaggcttaaaTCTTGATTACATCTTGCTTATA
TCTATCTCCTATAGCTTgttcatagctcgttggatagcttagggTCTCCT
CTTTCTTCATCACAATACTCTCTCGTCACAACATCATACCGCTCTTATCA
ATCATGCATCACGTTTTATGACAAACAGGGGCttctaaaatattatttta
ttcaattgttATAGCTTGTTTTGTTACGTACGTAGGGATTCTTAGAATAT
TTTATCAGCCTTCTTTTTTGGTCAGTTGACCTTACTTAGACAGGGTAAAA
TGCGCTAAATGAGATAAATGATTNTTTTGGTCAGTTGACCTTACTTAGAC
AGGGTAAAATGCGCTAAATGAGATAAATGATTACATTACCATTATTTTAT
tcgtttaaaattttatttaatattataCAGTTTACAATTACTTTTTGTGA
AGATttcaaccactgacctttatatatccctggaccaagttactcaatgc
cggccaagcaaaattttatgataagagttttttttgaaatcggtacccgc
ggagagagcgctagatccAGTTTCGCTTGTACAataatgatgtagcgccg
tttgtcgttaggcaaatCTTCAAACACTACAacggcttctttgcgggtac
caatttcaaaaaaacttctatCAAAGATGGctgatatagcttggtccagg
gatatataaaggtcagtgatttcAACAGAATTTTATAGAGCATTTTATTA
TTCCTTAACGTAGAGTttagtaattatttttttgtacaaTTGTTATGAAT
ACTGACACATTTATATGAATGGCAATTAAAAAGGTCATTTCGATATTGTC
TTAGGACTTAAGACCGGTCTCCcctttcgcgcgaaatgagcgaaaacttt
ttaacgtttttgtaaggtcattggtcggttgaaaatgaa
Run BLAST on NCBI

protein sequence of TCONS_00007239-protein

>TCONS_00007239-protein ID=TCONS_00007239-protein|Name=TCONS_00007239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp
NGYLLFQKGGGALKKSVEGKYSHLKGIASEIEVKEEMKDIKKKLTDKMKK
RKKEKAERKKETDSVDQVATVKRNNSMPMKNNNKILHAPQRHQTVSDRHS
LYASLPRKDVTSPGKAPPPRPPRPKNAHLSPGGVVNKEECHSVELPRKTL
GVDSTSSTTLPQSNSEGNIVDLMEMSSSSASSSLSSFSSCSLARSLDSLD
SSGGFLNPAFKDPASTTSHHQLHEPEGTSEHLIFETESADSSPKITGANL
KRGKPIQRNNTPPSVKPARPAPPQRPPRPASKIQQSPTSSPALAQNRLEK
HDEAFIETSESQDRKSMLLPNSPFYTPSQDLLGLDQSLFHEIGSSLSEDT
RARLAIDSQNQTQQQQQQPASTQSNPSNPFVAPTSSDRSLSPTNPFAPSS
NTLTSNISSTTVRDTREIDLVFDENTDSGGLHRSPVLTRATSFPLRNSTE
ISADRGDSRGSSADVSSEFDPFASCFEDAKKDFQLSDKSSIASEEDIPRH
FTVI
Run BLAST on NCBI

transcript from alignment at sc0000075:428..11807+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007239 ID=TCONS_00007239|Name=TCONS_00007239|organism=Clytia hemisphaerica|type=transcript|length=11380bp|location=Sequence derived from alignment at sc0000075:428..11807+ (Clytia hemisphaerica)
AAATGGTTATCTTCTTTTCCAGAAAGGTGGCGGTGCTTTGAAGAAAAGTG
TCGAAGGAAAATACAGTCATTTGAAAGGAATTGTACGTATCATCACACTT
GTgtaatttttatgtttgactattatttttggacctaccccggtggggtg
gaggtcctataaattaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNcacgtagatatcaattatatatgtgttaaatgcatacc
caggtaggtccataaaaaagtatcacttgttatatAAGAAAATCGTTATA
ATAGTTACCTTTTTATAACGTATCGTAACTCGAAGTATTGGTTAACTTTG
AGCCTTCTTAACAATTGAATATATAGCTTCATCTTTTGTGGAACTATTGG
AAACAATAATCTGTGAACAAACTCTCAACCTTGACAAGGTCCTTGTCAGT
GTTCGCCACAAAAGGGATAAATTAATATACTCCTTATTaacatactctcg
ggtactttgattgtttagaatatttCATGGTAAAAAGAATAACCAGAAGc
gtcatgttttttatttaaaaactgtaTATTCGACCTTCACAACAAGAGGT
CATCGTCAGAGTGTAAAAATCTATcaacaagaaaaatttttagaattttt
cgtTTATAAAGCTTTATTCGATAAATTGAACAGTTTTGCACAATCAACGA
TCAAGggaacctcgtccccgtgtatcccagggtttatttacgttactgat
agaTGCCAGGCTATTATCTGGCGCTATCAGTaggcatcaaaaagctgata
ataagCAGGGAACAAGGAATTTGAGATCAAATTTCGATTACAACTCGTGA
TATTTCGTTTAGTAAGTGAATGTATCCATGCAACTCGATTGAAATTGGGT
TGTCAGTTCGGTCTCTAAGCTATTTACTGACTGTTATTCGCTCAGATTCG
CTTGCAAAAGTTTTGAACATTTGAATCCTAAGACCTTCTCGTTTATTCAT
CATCCGTTCTCaagacatgttttttttttaatttcaggctTCGGAGATCG
AAGTGAAAGAAGAAATGAAGGATATAAAGGTTAGTATGTGTAACAATTTT
CATATCCTTCTCAAAAAGTTTGTGGTAGGTTTGCGCTTTAATCATGAATT
TTACAAAAAGGAATACAAAAGTGAACCGAAGTGAGGCGAAGTAGTGTAGT
GGCCATCGTTCTTGACTTCCGTGCTGGAGGTCAGGGTTCGTTTCCCACTC
GGTGCTGCGATTCacttggcaagtgaatgtaccttggcccgggtcaaccc
ataccatgtgaggggaatagggtaccatcactctgatacaagagtatggg
gagaTATGCTGGACATGAATGTGGTGTGGTGTGGTGATGGTACTCATATG
TTCAATACCTGCGAGAACGCAAGGCTCTCCCGTAATGTTCgagtatcatc
atcgatacagcaCGGCTCTGTTGTGTCGGgagcacagagtacaatgtctg
gtaagcgctgtgatttccctatctaggggtaggaaacatcccgggatagg
gcccggtccgatgatatcggagggtcAGCTTCTCTTCTCAGCTTCTCtca
tacaaaaaagaaaaactaactAGAAATTATTAGACCTGACAataaataat
tcagaatataaTAACCAAAgggttaaaatttattttcattgttgttTTAC
TATAAAATTTTGGAAACAAGATAAGCAATAACTTGTGCAGGGGCTATGGG
GCAATTAAAGCATTTTTACCCTAATTCTTAATACTTATTGCCTCGGCCAA
GCTAAGTAATACTTTCATATTGAATACTGTGATATTCAAAATGGTTATTC
TAAAGTAAAAATTCCGTttctattttcagaaaaagttaaCGGATAAGATG
AAGAAGAGGAAAAAGGAAAAGGTATTTTAACCACGCTTTCCGCTCACAAA
TACCTTATATTtccttgaatatttttattttttttttattttccgattTA
TTTAACGTTGGTGTTACATAGTTATAATTAAATACTAATTTATACCAACT
ATTGACAAAAATGATTATATGAAAAGATAATTTCTATAAAACTATATAAT
AAAGtgaaccgtacatcctgtgcccaagttcaggagttgccataaagcca
ttatggtaataaccgggagggcacattgctatacattgtNATAAAACTAT
ATAATAAAGtgaaccgtacatcctgtgcccaagttcaggagttgccataa
agccattatggtaataaccgggagggcacattacTATACATTGTATAAAG
TGAAACTATAAATTTTTAggtacatattttacaaaggCAAATATTTGTTA
GGTTTATTACATTAAGTGAGGATTTAAATGAATCGATGGAAGGCTTAAGC
TTAGTATTTTCGGGAATTTGGTTCCAAAGTAAGCTTCCACGAAATAAAAA
GGATTGCGTTCCGAAACGATGGGAGGTAGCCTTGGGTATTGACATCaata
tgaaatatgaaatttcttAATGCTACAAATGAATATGCGTGTTTTCATTC
CTATGGTCNATAAAAAGGATTGCGTTCCGAAACGATGGGAGGTAGCCTTG
GGTATTGACATCaatatgaaatatgaaatttcttAATGCTACAAATGAAT
ACGCGTGTTTTAAATGGAATTCATACCCATGGTGGTTTCAATGTTTGTTT
AGGATTCCAGTGTCCTTTTCCATGAGGAACTTTTAGGTATTGATTATCTA
CTTTTTCGATGGTAAGTTGCCGGATCTGTAAACGAGTCGATTTGGCAATT
GACGCCTTTGCAACGATGAAGTTTAGTCGAAGAATGGAATCTTTTTTCCT
CCGTAAGCGGGGTGGTCTgcgtaatttttaaacaaatgCTAGATTGATTG
GAAATGCGTAACATTAAAGCCTCATTTTCTCTTACCTAAGTAAGCTGAAA
AATTCGATCGTTGCCTTCGGCTATATCTTATTCACCTCCTTTTACTTGTC
ATTTAAGAACACGATTTCTTCTTTCAGGCTGAACGTAAAAAAGAGACTGA
CTCTGTGGACCAAGTGGCGACGGTCAAAAGGAACAACTCGATgccaatga
aaaataacaacaaaatcTTACATGCTCCTCAACGTCATCAAACTGTATCT
GATAGACACTCATTATATGCTTCCCTACCAAGAAAAGATGTAAGCTATTG
GACGCTTCTTTGAAGCTTATCCTAATTCATTATCAAACGAATGAAGTAAT
TTTCAGGTGTCCGAAGTCTAGAAGATTGCTCATTTTTCCTCATGATAATA
GTTTGGATAGCGAGAGCTTTTCATTTATGGCAAATGTAAAACGTTATTAG
CTCATGTTTCAAACGTCTTTTCAAGTCTTCCTCTAATTGGGAAACCTCTC
CATTTCTATTTATCCGACAGGTCACATCACCTGGTAAAGCGCCCCCACCT
CGGCCGCCACGCCCTAAGAACGCCCATCTATCGCCTGGAGGCGTTGTCAA
CAAAGAAGAATGTCATTCAGTAGAGTTACCAAGGAAAACATTAGGCGTGG
ATTCAACATCTTCAACAACTTTACCGCAGTCGAACAGTGAAGGGAATATT
GTTGATTTAATGGAGATGTCCTCTTCATCCGCATCTTCCTCACTCTCCTC
GTTTTCGAGTTGTTCACTCGCCAGATCGTTAGATTCACTCGATGTAAGTT
TTGACTATTTTCTTTTGATGACTAATGTTAAGTTTCCTTGCTGTTAGTAT
ATTGATGGGTAGAAGAAACCATCTTGGCACTTTCTATCGAGTTATAAATG
TCGTTTCATGATTATTATAATAACTTAATATTATCACGTGTCGTTTAACC
GCTAGTTTAACCTTATggtaggcgaaaataaaaaaatgtagtgtttccgg
aaaccggccgggtgaaaaaataataattttctgacccGGACGCAGATTTC
GTTAGTagagttctatttcaatgatcttaaattatcaaaaaaagtttttt
tccggccggccgcacgagagattttttctttgacccgcattccggaaaca
ctacatttttttattttcgccttactTTAGGTATTTAGGTCCTTGCTTAA
GACTTTCTTTCAAGATCTTCAAATTCTTTAGATATGAGTTTTATGTCGAT
AGTTTCTTTAAGTATTTATAGAACAGGAATAGTAAATTTGTTCTTTAGAG
AGGTTCCTAAAATTCAGATTATATTTCCAGACGTTTTGATCATATATTTT
TAAGAGTTTCTTTAGATTGAAACGATTATCCAGCTTGCAGCGAAGAGCGG
GTTATACAATGTTTCAAACAGTAATGGTGAGTCCGTGTCTGATAAAAACT
AGGCTTGAAAAGCAGAAAGAACAGTTTGAAGAGATTTTTTGATTAACAGT
TAAAGATGACTTGAACAAATTGCAGTAGATTCGACCAGGTTTACTTATAT
GTTTTTCCAGGTTAACCAAAGTATGAAGAAGCTAGGAGAAAGTGATGTGA
AATCGGTTTTCGATTGATCACTGTTCAATACTTGTAAACAACAacttttt
ttgacttatctCTGAAACAAATTTATTTAACACTGTTTAACCATTTTCCT
TAAATATTCTTTCAAGAGCTCTGGTGGCTTTTTGAACCCTGCTTTCAAAG
ACCCTGCTTCTACAACCTCTCATCACCAACTACACGAGCCTGAAGGAACT
TCAGaacatttgatctttgaaacggAATCGGCCGATTCATCACCAAAAAT
AACCGGTGCCAACCTGAAACGTGGTAAACCAATACAGCGGAATAATACAC
CACCCTCAGTGAAACCCGCCCGACCAGCTCCACCCCAAAGACCACCCCGG
CCTGCCAGTAAAATTCAACAAAGTCCTACAAGCTCACCAGCTTTGGCACA
AAATAGACTTGAAAAACATGACGAAGCTTTTATAGAAACTTCAGAATCAC
AAGATAGGAAATCGATGCTCTTACCGAATTCCCCTTTCTATACACCGTCT
CAAGATTTACTTGGCCTGGATCAGTCACTTTTTCATGAGATCGGCTCAAG
TTTATCAGAGGATACACGAGCGAGACTTGCTATAGATTCTCAAAATCAaa
cccaacaacaacaacaacaaccagcCTCAACACAGTCAAATCCCTCAAAT
CCATTTGTTGCACCGACATCCAGTGATCGTTCTTTATCACCAACAAACCC
ATTTGCACCCTCATCCAATACTTTAACCTCGAACATATCGTCAACTACGG
TGCGCGATACAAGAGAAATAGACCttgtttttgatgaaaacaCAGATTCG
GGTGGTCTTCACCGCTCACCTGTACTGACACGGGCGACCAGTTTTCCATT
GAGGAACAGTACAGAGATCTCTGCTGATAGGGGAGATTCGAGAGGCTCAA
GTGCGGATGTTTCTTCGGAGTTTGATCCTTTTGCGTCTTGTTTTGAAGAT
GCTAAAAAGGACTTCCAGTTATCAGACAAAAGGTAAGTTCTATATGGTAT
TATTAAGTTAACCAGGGGGAAATATTGCCTCGTTTCCTAAGCAACCCCTG
TTTTAATACTCCAAGCGGTACAGATCCTACCCCAGGATAGTGTTAAGTTT
TTAGACTCTGTTATTCCAGCCTCTGTCAACTCGCGGCCCATCTAGTGTTA
ATGATGTATAATAGCAATACTCGAACATgaagtagcgagtttatgtattt
gcacttttgaggacggtagagtgactgaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtaccgtcgtcctcagctggtcaggatctactcaa
attagaaccttaccgtctccgtcgctgaaaaacacacatacataaactcg
ctagtgTCGCTACAACGCCGAAATGTACTTTAAAGTTTGGAGAACCTGGG
CGATTTAGTCTTTGATTTCAAGTCAATTTGACCCTCGTGTGTCGAAAAGG
ggttgctttttaaaaaaatatgttgatGGGTACCTCTGATGTCCTGCAAA
ACTTTAGCCTTTATATTAAATTAACAGATAAATACGTAGGTTTAAATTAA
TATTAGTCTTATAATAGTTATTATTGAAAATTCtttagagattatttttt
gacaCTGTTTTTATAAACGTAAGAATTTCATATGGTATATTAGTAAGTCT
TAATGTGACAATTATAATCCTTCCttcatcttttcaatattatttATTTC
GTTCGATTGCTAagcttcatttttaaaaatcctttaaagtttgaactttt
agctaaattttcttattaattttttggtctaatttttcaaaaaactgagt
AAAATCTAAATGcttattaaaaatttcatttgaatagatatttaaatttt
tgtaGATCACtataaagaaaattcaaatatttttttgtaagtcATGTCTT
TCAGAATTTATTCAAGAAGCATATAATATAGGGGTGCTGTCTTTGTCTTT
GTCATCTTGTTTTTTGGTTGAGGGTCTGTGACATAGAGTGTGATCtaaat
ttataagaattttCAACATTcacaatagaaatttttaaggtttttctgTT
TCTGAATTTGAATCAatcattttataaaatttttcttatatatTTATGCA
CACACATACACACACAATCTCACACAATGTCTTTAATGTCAGAAAAATTC
ACTTCCAGTAAATTGCAAACTTACAAACGAGATAATTTggaaacttttat
tttttcgaatCAGCCAAAGCAAGTTCCTCGCTGAAATTCAGTTTCGAGAA
TTTAAATTTGTACGAAATTCTTTAGCAaaaatttctgacattaaaatatt
tttttctgattttcagtAGTATTGCCTCAGAAGAAGATATTCCTCGACAT
TTTACAGTCATTTGACCTCAACATCTTTACAATTGCTATCCTCACTTAAA
ATGGTAATAAACTAGAAAATAAGTTTTTAATATGATAATgcactttgaat
tttttagtTTAGCACCATTGCACTTTGATGATATAACCTAGATATTTTGG
TATGTGATTCTTTTGTTTTNAATATGATAATgcactttgaattttttagt
TTAGCACCATTGCACTTTGATGATATAACCTAGATATTTTGGTAtgtgat
tcttttgtttttgtttcatggggATATACATAAAATTTTTGCTTATGCTG
CCATATATGTAGAAAGAATTCAAAGATTTCGACGGATTCcacgagaaaaa
aaataaggaacAACTCAGTAAGGACTGTAAAAACTACCCGGAAAGGTCAT
TCCACACTTAAATCTTTCTCAATTTTTAATTCCATTTAATTTTAACCAAT
GACTAATCATGCTAACCGCTAAACTAACACCTTTCTCACTTTCAGCCGAC
GGTTGAtgaaaaatcataaccatctcTTTCGTACGGTTTCTTTACGTCAT
TTGCATCGACAAAAACGACAACCTAACGACAATATAACGACAAACGACGA
TATTGACGGTTACAACGATTTTCGTTTTAGAAGGACTAAATCTTTCTACG
AGGAAATTTGATAACATTACTTGACGTCTGACTTCATTTTGACTATGACT
TGACATCATACTGAATTTCCACCTGACAAACTATGTGACTTTAATGTGAG
AACTGACTTCAGACAAAGATTTGTGGTGGGGGTGGGTTTATAAAGATTTT
GAGTATTACTGTTTGaccaattgaaaatttagaattcaTGAAACAcagtt
attttgaaaaattattcgGAGTTTATTCAGCCTTCATGAAATAACTTTGA
TTTGATAATAAACAGGATAACtaaattccttttttttcatcttaaccctt
taagtgccacggtcaaatttttctaagttttttaaagaaaatcgccagtt
caaactttaaaggcttaaaTCTTGATTACATCTTGCTTATATCTATCTCC
TATAGCTTgttcatagctcgttggatagcttagggTCTCCTCTTTCTTCA
TCACAATACTCTCTCGTCACAACATCATACCGCTCTTATCAATCATGCAT
CACGTTTTATGACAAACAGGGGCttctaaaatattattttattcaattgt
tATAGCTTGTTTTGTTACGTACGTAGGGATTCTTAGAATATTTTATCAGC
CTTCTTTTTTGGTCAGTTGACCTTACTTAGACAGGGTAAAATGCGCTAAA
TGAGATAAATGATTNTTTTGGTCAGTTGACCTTACTTAGACAGGGTAAAA
TGCGCTAAATGAGATAAATGATTACATTACCATTATTTTATtcgtttaaa
attttatttaatattataCAGTTTACAATTACTTTTTGTGAAGATttcaa
ccactgacctttatatatccctggaccaagttactcaatgccggccaagc
aaaattttatgataagagttttttttgaaatcggtacccgcggagagagc
gctagatccAGTTTCGCTTGTACAataatgatgtagcgccgtttgtcgtt
aggcaaatCTTCAAACACTACAacggcttctttgcgggtaccaatttcaa
aaaaacttctatCAAAGATGGctgatatagcttggtccagggatatataa
aggtcagtgatttcAACAGAATTTTATAGAGCATTTTATTATTCCTTAAC
GTAGAGTttagtaattatttttttgtacaaTTGTTATGAATACTGACACA
TTTATATGAATGGCAATTAAAAAGGTCATTTCGATATTGTCTTAGGACTT
AAGACCGGTCTCCcctttcgcgcgaaatgagcgaaaactttttaacgttt
ttgtaaggtcattggtcggttgaaaatgaa

Coding sequence (CDS) from alignment at sc0000075:428..11807+

>TCONS_00007239 ID=TCONS_00007239|Name=TCONS_00007239|organism=Clytia hemisphaerica|type=CDS|length=1515bp|location=Sequence derived from alignment at sc0000075:428..11807+ (Clytia hemisphaerica)
AATGGTTATCTTCTTTTCCAGAAAGGTGGCGGTGCTTTGAAGAAAAGTGT
CGAAGGAAAATACAGTCATTTGAAAGGAATTgctTCGGAGATCGAAGTGA
AAGAAGAAATGAAGGATATAAAGaaaaagttaaCGGATAAGATGAAGAAG
AGGAAAAAGGAAAAGGCTGAACGTAAAAAAGAGACTGACTCTGTGGACCA
AGTGGCGACGGTCAAAAGGAACAACTCGATgccaatgaaaaataacaaca
aaatcTTACATGCTCCTCAACGTCATCAAACTGTATCTGATAGACACTCA
TTATATGCTTCCCTACCAAGAAAAGATGTCACATCACCTGGTAAAGCGCC
CCCACCTCGGCCGCCACGCCCTAAGAACGCCCATCTATCGCCTGGAGGCG
TTGTCAACAAAGAAGAATGTCATTCAGTAGAGTTACCAAGGAAAACATTA
GGCGTGGATTCAACATCTTCAACAACTTTACCGCAGTCGAACAGTGAAGG
GAATATTGTTGATTTAATGGAGATGTCCTCTTCATCCGCATCTTCCTCAC
TCTCCTCGTTTTCGAGTTGTTCACTCGCCAGATCGTTAGATTCACTCGAT
AGCTCTGGTGGCTTTTTGAACCCTGCTTTCAAAGACCCTGCTTCTACAAC
CTCTCATCACCAACTACACGAGCCTGAAGGAACTTCAGaacatttgatct
ttgaaacggAATCGGCCGATTCATCACCAAAAATAACCGGTGCCAACCTG
AAACGTGGTAAACCAATACAGCGGAATAATACACCACCCTCAGTGAAACC
CGCCCGACCAGCTCCACCCCAAAGACCACCCCGGCCTGCCAGTAAAATTC
AACAAAGTCCTACAAGCTCACCAGCTTTGGCACAAAATAGACTTGAAAAA
CATGACGAAGCTTTTATAGAAACTTCAGAATCACAAGATAGGAAATCGAT
GCTCTTACCGAATTCCCCTTTCTATACACCGTCTCAAGATTTACTTGGCC
TGGATCAGTCACTTTTTCATGAGATCGGCTCAAGTTTATCAGAGGATACA
CGAGCGAGACTTGCTATAGATTCTCAAAATCAaacccaacaacaacaaca
acaaccagcCTCAACACAGTCAAATCCCTCAAATCCATTTGTTGCACCGA
CATCCAGTGATCGTTCTTTATCACCAACAAACCCATTTGCACCCTCATCC
AATACTTTAACCTCGAACATATCGTCAACTACGGTGCGCGATACAAGAGA
AATAGACCttgtttttgatgaaaacaCAGATTCGGGTGGTCTTCACCGCT
CACCTGTACTGACACGGGCGACCAGTTTTCCATTGAGGAACAGTACAGAG
ATCTCTGCTGATAGGGGAGATTCGAGAGGCTCAAGTGCGGATGTTTCTTC
GGAGTTTGATCCTTTTGCGTCTTGTTTTGAAGATGCTAAAAAGGACTTCC
AGTTATCAGACAAAAGtAGTATTGCCTCAGAAGAAGATATTCCTCGACAT
TTTACAGTCATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004067XLOC_004067Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007239-proteinTCONS_00007239-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007239-exon-sc0000075-1491911889:428..509TCONS_00007239-exon-sc0000075-1491911889:428..509Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1510915933:428..509TCONS_00007239-exon-sc0000075-1510915933:428..509Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1575043694:428..509TCONS_00007239-exon-sc0000075-1575043694:428..509Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1491911889:4065..4106TCONS_00007239-exon-sc0000075-1491911889:4065..4106Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1510915933:4065..4106TCONS_00007239-exon-sc0000075-1510915933:4065..4106Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1575043694:4065..4106TCONS_00007239-exon-sc0000075-1575043694:4065..4106Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1491911889:4907..4948TCONS_00007239-exon-sc0000075-1491911889:4907..4948Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1510915933:4907..4948TCONS_00007239-exon-sc0000075-1510915933:4907..4948Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1575043694:4907..4948TCONS_00007239-exon-sc0000075-1575043694:4907..4948Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1491911889:6055..6216TCONS_00007239-exon-sc0000075-1491911889:6055..6216Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1510915933:6055..6216TCONS_00007239-exon-sc0000075-1510915933:6055..6216Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1575043694:6055..6216TCONS_00007239-exon-sc0000075-1575043694:6055..6216Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1491911889:6448..6720TCONS_00007239-exon-sc0000075-1491911889:6448..6720Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1510915933:6448..6720TCONS_00007239-exon-sc0000075-1510915933:6448..6720Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1575043694:6448..6720TCONS_00007239-exon-sc0000075-1575043694:6448..6720Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1491911889:7644..8509TCONS_00007239-exon-sc0000075-1491911889:7644..8509Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1510915933:7644..8509TCONS_00007239-exon-sc0000075-1510915933:7644..8509Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1575043694:7644..8509TCONS_00007239-exon-sc0000075-1575043694:7644..8509Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1491911889:9844..9930TCONS_00007239-exon-sc0000075-1491911889:9844..9930Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1510915933:9844..9930TCONS_00007239-exon-sc0000075-1510915933:9844..9930Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1575043694:9844..9930TCONS_00007239-exon-sc0000075-1575043694:9844..9930Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1491911889:10373..11807TCONS_00007239-exon-sc0000075-1491911889:10373..11807Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1510915933:10373..11807TCONS_00007239-exon-sc0000075-1510915933:10373..11807Clytia hemisphaericaexon
TCONS_00007239-exon-sc0000075-1575043694:10373..11807TCONS_00007239-exon-sc0000075-1575043694:10373..11807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:428..11807 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.83188	1.31189	0.956757	0	3.69589	2.72598	2.58371	2.79509	0.623329	1.45438	2.62693	0.965658	0.620889	0.210569	0.716871	0.551207	0.605725	2.12122	6.36562e-05	0.268923	2.54753	0.34797	2.10036	3.58864	2.87755	3.34372	1.66338	2.19267	4.02449	3.20982
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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