TCONS_00007307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007307
Unique NameTCONS_00007307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007307 ID=TCONS_00007307|Name=TCONS_00007307|organism=Clytia hemisphaerica|type=transcript|length=3326bp
CGACAATCAATGTAACTTTAAATTTTATCCACGTACTGTTCTttaggaaa
taaaaaaatcttgattatAAAAAAAGGATGTTACATATTTTACCATCGAG
GCAATGGCGTTAAAACGGgcattttttattgttctcGCCTGCTCAATACC
GTTCTGGGTGTATATTTTCTACACATGGCAAGGAAACTTTATCAAAACCA
TAGAAATCAAAGGAGATGTGAAAGTTCTAATTAATTTACAGAACGCTTTA
TTGGATAACCGTGTTCCTGATAGACCTAGAATTAAACGGATCCTGCATCA
TGATTGGAGATCGGGATCTGGTACATGTCAGTATCGATCTTATGATAGAC
TAATGAAGCCTTGTCATAACACAAGCTGGGAAAATGGTAACAAGGACATG
ACACTTCGCACTAAAGCCGATTTAACAGAGATCAAAATTGAATTATCGAA
CAGTGCTGATCAACCTGGACGTGTTATTTTACAGACTtttgatgaattga
aaaatcggaaaaagaTTGGAGGTGATTTTTGGCGATCCTACATCTCGaat
gataaatttaaaaaagcgATTTATTTTGTTGATCATTTGAATGGTTCGTA
TTCAGCAGAGTTTGTGATACCTTTTAAAGGGACCTACACATTGAATGTGT
TCCTTGAGCATTCCGTTTGTGATGGAATCATCGACCCTCCCATGTGGTGG
TTTACTAAAGgAAACGTGCATGGTAACGAGCAAAATGAAGGTATCATAGG
TAAAATGGATCAATTCCGAAATACACCCACAAAGAAAGTCACCattgaaa
tcaaaatagaaCCATCATCAAAACTGAAACAGACATTCAACAGCCTTGGG
AAAGCTCAAAATGTCATAAATGAATATTTTGGTTATTGGAAAGACGGCGA
ATATACGAGTTACCGAGACGGTAAACCCATCAGAACACCAACTTTAAACG
TTTCTGTGTCGAAACCCTTAAATACGTTATAGTTCTACGGTGATTCGCTG
AcatacctttttcaaaaatcatgcaAAAAACATCCTTTATGCACCAAAGT
ATTCCAAAATTGTGAATTGACTTATACTTGGACTTACAAGAAATTTTATT
CCTACAACGATGATAATGCTAAAgatttttacttaaaatctgGTAAAGAT
TTTGACGAGAAAAAATTCGTAAATGATTTCAAGGGTGTTTTATTAAACGA
CAAGATGGCAAACTCTgatgatgtttttattgttaattgGGGTATGCATA
CTATCGGCAATCTACAGTtaccaagaaaaatgaaagcatttcagagattt
ttgaaaatgatacaAGAAGTTAAAGACACTTTGAAAGACCGTATGCCGTT
GGTCATTTGGAAATCGACCACGCCACCGACATTTGAGAATGTAAAAGAGA
CATATACGTCGATGAGATTTAGAACAAAATGCcgTGCTGAAGTATGGAAC
AGCTATACCATCCAAGAACTTTGCAAAGCAAACATTCCTGTTCTAGACGT
ATACGATATGGCTTTAAGTACGCCGATCAAACCGAAAGACCATGTTCATT
TTCCTGATAAAGCTTTCTACCCAGCACAAGACGATTTATTGAGATACATT
ATTAAAGTTTACAGGTTGAATAAGTTAAAATTTTAGATTGGTATACGCTT
TTTAGTGGAATGATATTGGAAGTTGTCAAACGTAATCGTTTTTAGTGATT
TGGAATATTTTCGATACTCTCTTGTGGAAGGAGTCGAATAAGCAAGGGTT
ACGTTTAGAGCAGCTTTCTTATTCCCCTTTCTCAAACCACTGGACATGCA
AACAACTGAAAAATTCAgccagaaaaaacattttgttcataTTTTATCAT
ATTGTACATAGTAGGTAGGCATTTTAAGTGAGATTTGAtcaagaattttt
ccaatttttaccGATAGTATCTTTCATTAGAATATTCTAAGTATAAAATT
TACCTTTAAAGGATCGTTATAAACTAACGATACGTTTTGTTCTAtgattt
ctttgtattttctataatacacgttttcttcAAAGAACAATTCTTAAGAA
TACAAggttttattttcttattaaccctttaagtggtAATGTCGTATATA
TTAggcatgggctatataggagggcgaagccctcctgtaatgcccagttt
gagctAAAAATCGTCATTTTGGGTCTAACTCGTACGAatcggattgggct
tcatggccaagcaaaaaaataaccaaaaatgagtctttcagcgagatttt
aagctaaaaagtaaaaaaattgacaaaaatccacttttttaaggtttttg
accatttttggtcaacgagtgatccaagaacctccaaatttggccctgat
taaacttgattctgtcctccagcgaattagtttgaagttttaccactcgg
cacctttctatcattcagtcaggtccgcgcagcaatttttttaaaaaact
tagaaaaaaatgaccgtggcaccacttaaagggttaaaagcATGTAGCAA
GATCTGTAGGCTTTGACCTATTATTCACTAAATCACATATTGTAGTTCTA
CTGGAGAAGCTAAGGCACTTGACTCTTAAGGTAACTTCACCCCCTTttca
gaaatcagaaaaaaccttAATCAAAAGCAGTTAaaaagggactgggttcg
agttacCAAGGGTTAAAAGTCAAGACTTTTCAAGAAATACGAGAGTTTCC
CTTTTCACACACATTTTGAAACTTAGTTCGAGTTCTATTTGAATTTCAAC
ttgtttgattaaaaaacaatGTGTGATGACGACATTCGACAATCGATGAC
GTGACGACAAATCGAACAGCACCACTGGTACGCGATTTGTAATAAGCGAC
TTCTTCTGTCTTCGCAACAAAAATAAATAGTTCTACCATCTtcgttaaaa
aaaaactaaataatAACGAATTCAATTGTTTTGATGGTAAATTGGTTATT
AGCAGCGATACCTTTCTCGATTTGTCCATAGTTGTAAGTTAGATAATTCG
TTTGAATAATTTGTGTCTATTTATTTAAAGTCGCTTTTTATCATCTACGT
ACAGGACACGTTAAATTCTCTCGTTTTTGATCTTTTATGTTTTTCTCACA
CCGATATTTTACCAATATAGATCCAACTTGATTGAAACAATGTCCACCGA
ATGTTTCCTTTGTAACGTCAAAACGGCATCCCTTTCGGCCGTCACATAAC
ACTTCTAGAATTTGCTTACTGATATGTGCACAGCATTTGGAATCTTTATG
AACAACTTTACGGATGGAAATgctttggccctttttacacttAATCTCAA
CTGTTTTTCCTTCTTCGCCTGTagct
Run BLAST on NCBI

transcript from alignment at sc0000075:366449..370515-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007307 ID=TCONS_00007307|Name=TCONS_00007307|organism=Clytia hemisphaerica|type=transcript|length=4067bp|location=Sequence derived from alignment at sc0000075:366449..370515- (Clytia hemisphaerica)
CGACAATCAATGTAACTTTAAATTTTATCCACGTACTGTTCTTTAGGAAA
TAAAAAAATCTTGATTATAAAAAAAGGATGTTACATATTTTACCATCGAG
GCAATGGCGTTAAAACGGGCATTTTTTATTGTTCTCGCCTGCTCAATACC
GTTCTGGGTGTATATTTTCTACACATGGCAAGGAAACTTTATCAAAACCA
TAGAAATCAAAGGAGATGTGAAAGTTCTAATTAATTTACAGAACGCTTTA
TTGGATAACCGTGTTCCTGATAGACCTAGAATTAAACGGATCCTGCATCA
TGATTGGAGATCGGGATCTGGTACATGTCAGTATCGATCTTATGATAGAC
TAATGAAGCCTTGTCATAACACAAGCTGGGAAAATGGTAACAAGGACATG
ACACTTCGCACTAAAGCCGATTTAACAGAGATCAAAATTGAATTATCGAA
CAGTGCTGATCAACCTGGACGTGTTATTTTACAGACTTTTGATGAATTGA
AAAATCGGAAAAAGATTGGAGGTGATTTTTGGCGATCCTACATCTCGAAT
GATAAATTTAAAAAAGCGATTTATTTTGTTGATCATTTGAATGGTTCGTA
TTCAGCAGAGTTTGTGATACCTTTTAAAGGGACCTACACATTGAATGTGT
TCCTTGAGCATTCCGTTTGTGATGGAATCATCGACCCTCCCATGTGGTGG
TTTACTAAAGGTATTTCAAAAAACATATTATCTTTCTCATCATCCTATCT
AACAGGGTTTAAATTGTTTTTAACCATGATAAAGACTTTCTGAATCTAAG
AATGGTCCTCTCTTATTTAACAGTTACACAAAACCTCCCTAGAGTAAGAC
CTTAAAAATTCGTTGCAAAGACTTATTTTCCTTCCATACATTTTTAGACG
CGATTTAAGCAACCTCTAGCCTTGAAAAAGCAAAAGAACTAAACAAAGCT
AAACAACTTGAATACACCTCGAACAAATATAGTTTTTATCTTTTATTTTC
TTCAAAGGAAACGTGCATGGTAACGAGCAAAATGAAGGTATCATAGGTAA
AATGGATCAATTCCGAAATACACCCACAAAGAAAGTCACCATTGAAATCA
AAATAGAACCATCATCAAAACTGAAACAGACATTCAACAGCCTTGGGAAA
GCTCAAAATGTCATAAATGAATATTTTGGTTATTGGAAAGACGGCGAATA
TACGAGTTACCGAGACGGTAAACCCATCAGAACACCAACTTTAAACGTTT
CTGTGTCGAAACCCTTAAATACGTTATAGTTCTACGGTGATTCGCTGACA
TACCTTTTTCAAAAATCATGCAAAAAACATCCTTTATGCACCAAAGTATT
CCAAAATTGTGAATTGACTTATACTTGGACTTACAAGAAATTTTATTCCT
ACAACGATGATAATGCTAAAGATTTTTACTTAAAATCTGGTAAAGATTTT
GACGAGAAAAAATTCGTAAATGATTTCAAGGGTGTTTTATTAAACGACAA
GATGGCAAACTCTGATGATGTTTTTATTGTTAATTGGGGTATGCATACTA
TCGGCAATCTACAGTTACCAAGAAAAATGAAAGCATTTCAGAGATTTTTG
AAAATGATACAAGAAGTTAAAGACACTTTGAAAGACCGTATGCCGTTGGT
CATTTGGAAATCGACCACGCCACCGACATTTGAGAATGTAAAAGAGACAT
ATACGTCGATGAGATTTAGAACAAAATGCGTAAGTAACTTGTTTCATGAT
GTTTTATACAGTTTGTTATCAAACAGAAACTTACACTTCTTTTGCTGCTT
TTTTTTAAACCCTTCAAATTCAAGTGACCTGTATAAAAGCCTCGCCCCTG
TCATATAATGTAAGAATGAACCAAAATACCGTCCGAAAGTCCGAAACATT
CCTGACTACTTGATTTTAAGCGCTTAGATTTTAAACAGCTTAAACATTTT
AGTGTATCACTCCAAGTGCAATGAATAAAATTAAATTACCTCATAAGGGA
ATTGNTAAACATTTTAGTGTACCACTCCAAGTGCAATGAATAAAATTAAA
TTACCTTAAGGGAATTAATTTTGGCGACAACCTGCTTGAGAACCATTGAT
AATCTAACTGAACTGATAGTTCTAACTGTCAAAAACTAGAACATAGACTA
CAAAGACTTTTTTTTACTTTTAGCGTGCTGAAGTATGGAACAGCTATACC
ATCCAAGAACTTTGCAAAGCAAACATTCCTGTTCTAGACGTATACGATAT
GGCTTTAAGTACGCCGATCAAACCGAAAGACCATGTTCATTTTCCTGATA
AAGCTTTCTACCCAGCACAAGACGATTTATTGAGATACATTATTAAAGTT
TACAGGTTGAATAAGTTAAAATTTTAGATTGGTATACGCTTTTTAGTGGA
ATGATATTGGAAGTTGTCAAACGTAATCGTTTTTAGTGATTTGGAATATT
TTCGATACTCTCTTGTGGAAGGAGTCGAATAAGCAAGGGTTACGTTTAGA
GCAGCTTTCTTATTCCCCTTTCTCAAACCACTGGACATGCAAACAACTGA
AAAATTCAGCCAGAAAAAACATTTTGTTCATATTTTATCATATTGTACAT
AGTAGGTAGGCATTTTAAGTGAGATTTGATCAAGAATTTTTCCAATTTTT
ACCGATAGTATCTTTCATTAGAATATTCTAAGTATAAAATTTACCTTTAA
AGGATCGTTATAAACTAACGATACGTTTTGTTCTATGATTTCTTTGTATT
TTCTATAATACACGTTTTCTTCAAAGAACAATTCTTAAGAATACAAGGTT
TTATTTTCTTATTAACCCTTTAAGTGGTAATGTCGTATATATTAGGCATG
GGCTATATAGGAGGGCGAAGCCCTCCTGTAATGCCCAGTTTGAGCTAAAA
ATCGTCATTTTGGGTCTAACTCGTACGAATCGGATTGGGCTTCATGGCCA
AGCAAAAAAATAACCAAAAATGAGTCTTTCAGCGAGATTTTAAGCTAAAA
AGTAAAAAAATTGACAAAAATCCACTTTTTTAAGGTTTTTGACCATTTTT
GGTCAACGAGTGATCCAAGAACCTCCAAATTTGGCCCTGATTAAACTTGA
TTCTGTCCTCCAGCGAATTAGTTTGAAGTTTTACCACTCGGCACCTTTCT
ATCATTCAGTCAGGTCCGCGCAGCAATTTTTTTAAAAAACTTAGAAAAAA
ATGACCGTGGCACCACTTAAAGGGTTAAAAGCATGTAGCAAGATCTGTAG
GCTTTGACCTATTATTCACTAAATCACATATTGTAGTTCTACTGGAGAAG
CTAAGGCACTTGACTCTTAAGGTAACTTCACCCCCTTTTCAGAAATCAGA
AAAAACCTTAATCAAAAGCAGTTAAAAAGGGACTGGGTTCGAGTTACCAA
GGGTTAAAAGTCAAGACTTTTCAAGAAATACGAGAGTTTCCCTTTTCACA
CACATTTTGAAACTTAGTTCGAGTTCTATTTGAATTTCAACTTGTTTGAT
TAAAAAACAATGTGTGATGACGACATTCGACAATCGATGACGTGACGACA
AATCGAACAGCACCACTGGTACGCGATTTGTAATAAGCGACTTCTTCTGT
CTTCGCAACAAAAATAAATAGTTCTACCATCTTCGTTAAAAAAAAACTAA
ATAATAACGAATTCAATTGTTTTGATGGTAAATTGGTTATTAGCAGCGAT
ACCTTTCTCGATTTGTCCATAGTTGTAAGTTAGATAATTCGTTTGAATAA
TTTGTGTCTATTTATTTAAAGTCGCTTTTTATCATCTACGTACAGGACAC
GTTAAATTCTCTCGTTTTTGATCTTTTATGTTTTTCTCACACCGATATTT
TACCAATATAGATCCAACTTGATTGAAACAATGTCCACCGAATGTTTCCT
TTGTAACGTCAAAACGGCATCCCTTTCGGCCGTCACATAACACTTCTAGA
ATTTGCTTACTGATATGTGCACAGCATTTGGAATCTTTATGAACAACTTT
ACGGATGGAAATGCTTTGGCCCTTTTTACACTTAATCTCAACTGTTTTTC
CTTCTTCGCCTGTAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004102XLOC_004102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007307-exon-sc0000075-1575043694:369806..370515TCONS_00007307-exon-sc0000075-1575043694:369806..370515Clytia hemisphaericaexon
TCONS_00007307-exon-sc0000075-1575043694:368787..369508TCONS_00007307-exon-sc0000075-1575043694:368787..369508Clytia hemisphaericaexon
TCONS_00007307-exon-sc0000075-1575043694:366449..368342TCONS_00007307-exon-sc0000075-1575043694:366449..368342Clytia hemisphaericaexon
TCONS_00007307-exon-sc0000075-1510915933:369806..370515TCONS_00007307-exon-sc0000075-1510915933:369806..370515Clytia hemisphaericaexon
TCONS_00007307-exon-sc0000075-1510915933:368787..369508TCONS_00007307-exon-sc0000075-1510915933:368787..369508Clytia hemisphaericaexon
TCONS_00007307-exon-sc0000075-1510915933:366449..368342TCONS_00007307-exon-sc0000075-1510915933:366449..368342Clytia hemisphaericaexon
TCONS_00007307-exon-sc0000075-1491911889:369806..370515TCONS_00007307-exon-sc0000075-1491911889:369806..370515Clytia hemisphaericaexon
TCONS_00007307-exon-sc0000075-1491911889:368787..369508TCONS_00007307-exon-sc0000075-1491911889:368787..369508Clytia hemisphaericaexon
TCONS_00007307-exon-sc0000075-1491911889:366449..368342TCONS_00007307-exon-sc0000075-1491911889:366449..368342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:366449..370515 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0733229	0.0902395	0.0740308	0	0.0446483	0.0177526	2.52405	2.53779	0.974302	0.990865	0.747144	0.577336	0.6588	0.723075	1.40722	1.78041	1.81677	1.74963	0.946599	0.585396	2.06619	1.79835	0.874185	1.032	0.468507	0.450091	0.245287	0.272821	2.02241	2.03332
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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