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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007321 ID=TCONS_00007321|Name=TCONS_00007321|organism=Clytia hemisphaerica|type=transcript|length=2040bpRun BLAST on NCBI protein sequence of TCONS_00007321-protein >TCONS_00007321-protein ID=TCONS_00007321-protein|Name=TCONS_00007321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp FCMLYTLCSRDQVTMENFLYNFQPSKDTEESSRDGWGGRGGYMQARKSKHRun BLAST on NCBI transcript from alignment at sc0000075:440192..451485- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007321 ID=TCONS_00007321|Name=TCONS_00007321|organism=Clytia hemisphaerica|type=transcript|length=11294bp|location=Sequence derived from alignment at sc0000075:440192..451485- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000075:440192..451485- >TCONS_00007321 ID=TCONS_00007321|Name=TCONS_00007321|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0000075:440192..451485- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007321 vs. Swiss-Prot (Human)
Match: REV1 (DNA repair protein REV1 OS=Homo sapiens GN=REV1 PE=1 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 8.803e-107 Identity = 196/483 (40.58%), Postives = 287/483 (59.42%), Query Frame = 1
Query: 709 NFISEYYTHSRLHHLSMWKAELKKFTDSIQXXXX-----------------------XXXXXXXXHFSRQTLIMHVDLDSFFVSVSLK------------------------------------LNSELRGKPLAVCHST-------SQGPNTGXXXXXXXXXXXXYEARQYGCRNGMMLKHAKSLCPNLICVPYQFEEYRNVS*KFYEVLASHTTSIEAVSCDEALMDISKLVTGEDDNEVKELAEKIRSEVLKSTGCTASCGIGNSVLIARLATRRAKPDGVHYVLDNDIPEFIECQKVIDLPGIGRAQGEKFTALNIQTCKELQMLSLTRLQKEFGPKQGDTLYKFCRGKDDRGLKLEHERKSVSAEINYGMRFKEYEEVDRFMKELSQEVSKRLKEVSKKGSQITLKVMIRKKDA-MDPAKYMGHGICDHFSKGVSLPEPTSDPLVISKNCVSILKTQKIPASDLRGIGIQMTKLCDSS 1956
NFIS +Y+HSRLHH+SMWK EL +F +++Q++ + +V + Q+ IMHVD+D FFVSV ++ N L+GK + S+ +Q S S +EIASCSYEARQ G +NGM HAK LCPNL VPY F Y+ V+ YE LAS+T +IEAVSCDEAL+DI++++ E E A +R E+ T C AS GIG+++L+AR+ATR+AKPDG +++ ++ +FI Q V +LPG+G + K +L I+TC +LQ +++ +LQKEFGPK G LY+FCRG DDR ++ E ERKSVSAEINYG+RF + +E + F+ LS+E+ +RL+ KG ++TLK+M+RK A ++ AK+ GHGICD+ ++ V+L + T + +I K +++ T K+ SD+RG+GI + +L ++
Sbjct: 347 NFISNFYSHSRLHHISMWKCELTEFVNTLQRQSNGIFPGREKLKKMKTGRSALVVTDTGDMSVLNSPRHQSCIMHVDMDCFFVSVGIRNRPDLKGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGKAADIPDSSLWENPDSAQANGIDSVLSRAEIASCSYEARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEIL-AETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLVPTN 828 HSP 2 Score: 131.339 bits (329), Expect = 2.488e-31 Identity = 66/136 (48.53%), Postives = 93/136 (68.38%), Query Frame = 1
Query: 100 DGWGGRGGYMQARKSKHQDQFQTSFSRK-----SNIFNEVSIWVNGYTEPSSDELRKIMGEHGGKYQHSFSKTYVTRVIATNLPDSKIKNLKRNDKVVRPNWIVDSLKAGRLLSIDKYLLYSVNKRDGNVLSFQSL 492
DGW GGYM A+ K ++QF++ + + S IF+ V+I+VNGYT+PS++ELRK+M HGG+Y +S++ T +IATNLP++KIK LK +KV+RP WIV+S+KAGRLLS Y LY+ LSF +
Sbjct: 13 DGWETWGGYMAAKVQKLEEQFRSDAAMQKDGTSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK-GEKVIRPEWIVESIKAGRLLSYIPYQLYTKQSSVQKGLSFNPV 147 The following BLAST results are available for this feature:
BLAST of TCONS_00007321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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