TCONS_00007388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007388
Unique NameTCONS_00007388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2060

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007388 ID=TCONS_00007388|Name=TCONS_00007388|organism=Clytia hemisphaerica|type=transcript|length=2060bp
GCAATCCAAGGAACTGTCGCAACAATGACCAAAGAATATCGTGCCTTTCT
ATATGAGATTGTCACGCCCATCTTGGCGGCTGGGATAGTGGTCCTAAACA
TTTTAGAAATGTTTCTCATTCGAAAGCAAAAAGGACGAAAAGGTGTTGGA
AGTGTTTACATCGTCAATCTCTGTACATCCGATATTTTTGTCGGTATTGC
AATGATCATACTCAAAATCATGACACAATTCCAAAAAACAACACTCAAAG
ATGATGAAATCGCAAAGGAGTTCTACAACATCATCCGATATTGCGTAATC
CGAATTTCACTCTTCGTCTCCGTTTTCAACCTATCCGCTTTAACCATTGA
CCGGCTTTTTGCCATCAAATTTCCATTTATCCACCGGAAACAAGGGAAGA
AATTCGCATTCAAAATCTGTATCGGCGTCTGGGCTCTTAGCGTCGTTTTA
TGTAGTATCGTGTATTGCGTCACACGGTTTTATCTTAACAACATCGGCCG
TTACAACAATTTGGTTTTCCCGATCGCAACATATTCAGCTTCAATCATCT
TTATCATTTCATACACAATAATTTTCATTGAGATGCGAAAGAGCTCCAAG
AATGTGGGGGCTGGGTCGAGGAAGGGAACAAAAGCTGCATCGGAGCAGGA
TAAAGCAGAGTACCGTTTCCTGAAACTGGCTATCAAGACTGTCGCCGTCT
TCATGATCTGCTGGATTCCTTTCTCAACCTGTAGTCTACACATGGCCATC
ACTGGCACGTGTGGCGGGCGAAGCGTCGAATATTCTCTCTTCACACTGGC
CTACATGAATTCTGTGATCAATCCATTCATCTATTTGACGCATGCACAGA
AAGCGATTTCCCAAAAGATGAacaaaatgattcaatttttcattccaAAG
AAAGAAGAAACGATTGAAAAGAATTTGAGTAGTGCTGTTACTAAGGATAC
CACGGTTGCTATGGCTACAGGAAATGAGGCTGCTTAAACATCATTGAATG
ATAACATGAAATGGTCTGGGTCAGTAATAAGAACATATCATCTCCCTGAA
TATAGTGACCGCTCCTTCTCAAAAGATCTGCAAACAGCCTTGCACGTTAC
ATGAAAAACTTAGTCTCAAAAACAGAATCCTTATAGGACAATGCAGTTTC
CAAAATGTTCACTTATCTCGCAAATAACATTCAAATTTTCCTAGCTCGAA
CCGAATTTAGTATATTTTCAACTTCCTTTATGTACAATCAAGGTCGAAAG
GTTCCATGAAATATCTAAACAAGCTTTTAAAATCCATATTTATCTAAACt
ccaatgttgtttctattaATTGCTTGTGAGCTTTACTGCAAATTCTATAG
ACTTGAGGGAAAATTCAAAGATCCAacttcaaaatgtttaaaaagaaaGC
ACGATGGGCAAGATTTGATGAGGATGCTCAACTTCATTGAGCTTTAAATG
ACTGTGTACTTATATagcttttaatttaatttctaaTTTCATTTGGTGTA
AATTAGTATTTATCATGTAGCGAAGTTACCGAACGATAGAACCATAGCAT
Aaagctttcttatactatgatagaactttaacacccctgtgtcacagacc
cgctgggaccccagtccaacaggaaaatttggcaaaaatttcgtccccgg
ttgGAAAATACTCagcaatttcagccccactgggaaattgactttgattt
tatccccattcgaaattcaatgtttaaaaattgccctccaaactggattt
tttaaccttggaacaatagaatttttatctccATAGGAATTTAAATAGGA
GTtattatccccactgaggaaaaaagttctaccggggctgtgagacaggg
gtgtactttAGTTTGAAGCCGGGAGTTCGAATGACTTGGAAAACTCCATA
CAACCATACTTtcatttgaactttttgaaagaggttttgcgagaaaaaaa
agacattttagTCAGTTTGGAAACAGTAAGCTCTAACAAAAACTGCTTGA
AAGTGTAAACGAGATAATACcattaaaagattttcctatttttcacgGAA
AAATCCTCCT
Run BLAST on NCBI

protein sequence of TCONS_00007388-protein

>TCONS_00007388-protein ID=TCONS_00007388-protein|Name=TCONS_00007388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
AIQGTVATMTKEYRAFLYEIVTPILAAGIVVLNILEMFLIRKQKGRKGVG
SVYIVNLCTSDIFVGIAMIILKIMTQFQKTTLKDDEIAKEFYNIIRYCVI
RISLFVSVFNLSALTIDRLFAIKFPFIHRKQGKKFAFKICIGVWALSVVL
CSIVYCVTRFYLNNIGRYNNLVFPIATYSASIIFIISYTIIFIEMRKSSK
NVGAGSRKGTKAASEQDKAEYRFLKLAIKTVAVFMICWIPFSTCSLHMAI
TGTCGGRSVEYSLFTLAYMNSVINPFIYLTHAQKAISQKMNKMIQFFIPK
KEETIEKNLSSAVTKDTTVAMATGNEAA
Run BLAST on NCBI

transcript from alignment at sc0000076:718216..722069+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007388 ID=TCONS_00007388|Name=TCONS_00007388|organism=Clytia hemisphaerica|type=transcript|length=3854bp|location=Sequence derived from alignment at sc0000076:718216..722069+ (Clytia hemisphaerica)
GCAATCCAAGGTAATATATGTTTGAGTTCGAAATAGATAGTCAACTGTTT
ATATATTAAGTCATTACTATTTTCATGCAAGGAAAATTTGAACATCCTGC
TTACAGAATCTGGTGCGAACCAAATCTCCAAAACTTAACTTTCAGGCCCG
TAGCAACCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggtgcac
aaGGGCATTTTCCCcccaaagatttttccaaaagttagtagctttgaaaa
atcttgtattaatggcttcattttgagcataattttttaattagatgcGT
TTTCcagcaatctagacaccttaaattgcgaatttttttctctcggATCA
AACCATGGCTTACCCTCGGTTTATATTTCTCACTTTGccccctcaaaatg
aaaatgcttcctacgggcCTGACTCTTAAAGAGATTTTGGCAGATAACGT
TTATACTATCTGTTTCATCCATGAATTGATAGCCCTTAATAGGTGATATA
tacagttttttgaaatataactttatgAATTTGCTCTACGAAGAGTATCG
AGCACTCTCTGCTTTAATGTTTAAAGGTGATTTATTTGTCATCTTTTAGG
AACTGTCGCAACAATGACCAAAGAATATCGTGCCTTTCTATATGAGATTG
TCACGCCCATCTTGGCGGCTGGGATAGTGGTCCTAAACATTTTAGAAATG
TTTCTCATTCGAAAGCAAAAAGGACGAAAAGGTAAgttataaaaatgttt
tataaTAGTCCAAATGTTGTGACAAAACTTAAAAGGGTTTTTGGTGAGAA
GATAGTAGGCGCTGAACTTTATCAACCAttgaccaagctatatccaccat
ctttgatcagAGGTTTTAGAATGGTAACACCACTTAAGTTAGTGAGTCTC
ATTATCTGGTGGCTGTCAGTGGATCCGGAAGTGAGGGAGTCCTTTACTAT
TTGCAATAGACCTGGGATATTGAATACTGAGGTGGAGCACCACACCTAca
ctcagctcccagtaacttaccgacCAGATAAGACTAAtttgttgcagatt
atttcaaggtattctagttatgtatatacagtacattttgggggtcatat
tgaatatttctgacattacttctttatgattctacaaaagggagtNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATAAGACTAATCAATCTAAAGCTACTAATCC
GCTATGAACGATAATTTGACGTATTCTTGATACGATATTGATTCAATTTT
TAACTTATTCTTTTGAAGGTGTTGGAAGTGTTTACATCGTCAATCTCTGT
ACATCCGATATTTTTGTCGGTATTGCAATGATCATACTCAAAATCATGAC
ACAATTCCAAAAAACAACACTCAAAGATGATGAAATCGCAAAGGAGTTCT
ACAACATTATCCGATATTGCGTAATCCGAATTTCACTCTTCGTCTCCGTT
TTCAACCTATCCGCTTTAACCATTGACCGGCTTTTTGCCATCAAATTTCC
ATTTANATCGCAAAGGAGTTCTACAACATCATCCGATATTGCGTAATCCG
AATTTCACTCTTCGTCTCCGTTTTCAACCTATCCGCTTTAACCATTGACC
GGCTTTTTGCCATCAAATTTCCATTTATCCACCGGAAACAAGGGAAGAAA
TTCGCATTCAAAATCTGTATCGGCGTCTGGGCTCTTAGCGTCGTTTTATG
TAGTATCGTGTATTGCGTCACACGGTTTTATCTTAACAACATCGGCCGTT
ACAACAATTTGGTTTTCCCGATCGCAACATATTCAGCTTCAATCATCTTT
ATCATTTCATACACAATAATTTTCATTGAGATGCGAAAGAGCTCCAAGAA
TGTGGGGGCTGGGTCGAGGAAGGGAACAAAAGCTGCATCGGAGCAGGATA
AAGCAGAGGTAACAACtgacttttttatttaactGTTCGTCTCCGACACG
GGAAAAACAGGAAGATTCTTCTTGAGAAATTTTCTGAAATGGGCAAATGC
ATCTTCATGAATGTTTTCGTACTAATTGTTGTGAGGTTCTTTCCCCTCTG
TTTAAATAGCTTGACATTCACGCTTAAATGTTTTCGCTAATCATCCTACA
TCTTAGATTCTTCTCAAAGAGGCAAAAAATTACTTATTTAAAATTGTTAT
TTAGTACCGTTTCCTGAAACTGGCTATCAAGACTGTCGCCGTCTTCATGA
TCTGCTGGATTCCTTTCTCAACCTGTAGTCTACACATGGCCATCACTGGC
ACGTGTGGCGGGCGAAGCGTCGAATATTCTCTCTTCACACTGGCCTACAT
GAATTCTGTGATCAATCCATTCATCTATTTGACGCATGCACAGAAAGCGA
TTTCCCAAAAGATGAacaaaatgattcaatttttcattccaAAGAAAGAA
GAAACGATTGAAAAGAATTTGAGTAGTGCTGTTACTAAGGATACCACGGT
TGCTATGGCTACAGGAAATGAGGCTGCTTAAACATCATTGAATGATAACA
TGAAATGGTCTGGGTCAGTAATAAGAACATATCATCTCCCTGAATATAGT
GACCGCTCCTTCTCAAAAGATCTGCAAACAGCCTTGCACGTTACATGAAA
AACTTAGTCTCAAAAACAGAATCCTTATAGGACAATGCAGTTTCCAAAAT
GTTCACTTATCTCGCAAATAACATTCAAATTTTCCTAGCTCGAACCGAAT
TTAGTATATTTTCAACTTCCTTTATGTACAATCAAGGTCGAAAGGTTCCA
TGAAATATCTAAACAAGCTTTTAAAATCCATATTTATCTAAACtccaatg
ttgtttctattaATTGCTTGTGAGCTTTACTGCAAATTCTATAGACTTGA
GGGAAAATTCAAAGATCCAacttcaaaatgtttaaaaagaaaGCACGATG
GGCAAGATTTGATGAGGATGCTCAACTTCATTGAGCTTTAAATGACTGTG
TACTTATATagcttttaatttaatttctaaTTTCATTTGGTGTAAATTAG
TATTTATCATGTAGCGAAGTTACCGAACGATAGAACCATAGCATAaagct
ttcttatactatgatagaactttaacacccctgtgtcacagacccgctgg
gaccccagtccaacaggaaaatttggcaaaaatttcgtccccggttgGAA
AATACTCagcaatttcagccccactgggaaattgactttgattttatccc
cattcgaaattcaatgtttaaaaattgccctccaaactggattttttaac
cttggaacaatagaatttttatctccATAGGAATTTAAATAGGAGTtatt
atccccactgaggaaaaaagttctaccggggctgtgagacaggggtgtac
tttAGTTTGAAGCCGGGAGTTCGAATGACTTGGAAAACTCCATACAACCA
TACTTtcatttgaactttttgaaagaggttttgcgagaaaaaaaagacat
tttagTCAGTTTGGAAACAGTAAGCTCTAACAAAAACTGCTTGAAAGTGT
AAACGAGATAATACcattaaaagattttcctatttttcacgGAAAAATCC
TCCT

Coding sequence (CDS) from alignment at sc0000076:718216..722069+

>TCONS_00007388 ID=TCONS_00007388|Name=TCONS_00007388|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at sc0000076:718216..722069+ (Clytia hemisphaerica)
GCAATCCAAGGAACTGTCGCAACAATGACCAAAGAATATCGTGCCTTTCT
ATATGAGATTGTCACGCCCATCTTGGCGGCTGGGATAGTGGTCCTAAACA
TTTTAGAAATGTTTCTCATTCGAAAGCAAAAAGGACGAAAAGGTGTTGGA
AGTGTTTACATCGTCAATCTCTGTACATCCGATATTTTTGTCGGTATTGC
AATGATCATACTCAAAATCATGACACAATTCCAAAAAACAACACTCAAAG
ATGATGAAATCGCAAAGGAGTTCTACAACATCATCCGATATTGCGTAATC
CGAATTTCACTCTTCGTCTCCGTTTTCAACCTATCCGCTTTAACCATTGA
CCGGCTTTTTGCCATCAAATTTCCATTTATCCACCGGAAACAAGGGAAGA
AATTCGCATTCAAAATCTGTATCGGCGTCTGGGCTCTTAGCGTCGTTTTA
TGTAGTATCGTGTATTGCGTCACACGGTTTTATCTTAACAACATCGGCCG
TTACAACAATTTGGTTTTCCCGATCGCAACATATTCAGCTTCAATCATCT
TTATCATTTCATACACAATAATTTTCATTGAGATGCGAAAGAGCTCCAAG
AATGTGGGGGCTGGGTCGAGGAAGGGAACAAAAGCTGCATCGGAGCAGGA
TAAAGCAGAGTACCGTTTCCTGAAACTGGCTATCAAGACTGTCGCCGTCT
TCATGATCTGCTGGATTCCTTTCTCAACCTGTAGTCTACACATGGCCATC
ACTGGCACGTGTGGCGGGCGAAGCGTCGAATATTCTCTCTTCACACTGGC
CTACATGAATTCTGTGATCAATCCATTCATCTATTTGACGCATGCACAGA
AAGCGATTTCCCAAAAGATGAacaaaatgattcaatttttcattccaAAG
AAAGAAGAAACGATTGAAAAGAATTTGAGTAGTGCTGTTACTAAGGATAC
CACGGTTGCTATGGCTACAGGAAATGAGGCTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004156XLOC_004156Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007388-proteinTCONS_00007388-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007388-exon-sc0000076-1491911889:718216..718225TCONS_00007388-exon-sc0000076-1491911889:718216..718225Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1510915933:718216..718225TCONS_00007388-exon-sc0000076-1510915933:718216..718225Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1575043694:718216..718225TCONS_00007388-exon-sc0000076-1575043694:718216..718225Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1491911889:718915..719046TCONS_00007388-exon-sc0000076-1491911889:718915..719046Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1510915933:718915..719046TCONS_00007388-exon-sc0000076-1510915933:718915..719046Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1575043694:718915..719046TCONS_00007388-exon-sc0000076-1575043694:718915..719046Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1491911889:719784..719920TCONS_00007388-exon-sc0000076-1491911889:719784..719920Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1510915933:719784..719920TCONS_00007388-exon-sc0000076-1510915933:719784..719920Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1575043694:719784..719920TCONS_00007388-exon-sc0000076-1575043694:719784..719920Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1491911889:720043..720423TCONS_00007388-exon-sc0000076-1491911889:720043..720423Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1510915933:720043..720423TCONS_00007388-exon-sc0000076-1510915933:720043..720423Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1575043694:720043..720423TCONS_00007388-exon-sc0000076-1575043694:720043..720423Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1491911889:720670..722069TCONS_00007388-exon-sc0000076-1491911889:720670..722069Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1510915933:720670..722069TCONS_00007388-exon-sc0000076-1510915933:720670..722069Clytia hemisphaericaexon
TCONS_00007388-exon-sc0000076-1575043694:720670..722069TCONS_00007388-exon-sc0000076-1575043694:720670..722069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:718216..722069 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0766672	0.0944017	0.195315	0.111575	0.180968	0.163843	1.57738	1.70823	6.25378	3.28453	0.504882	6.4913	0.025523	0.066412	0.0326977	0.0467577	0.777414	0.843065	0.122425	0.106758	3.89436	5.63235	0.488039	0.501664	0.869374	0.992946	0.0264846	0.0564537	0.0646827	0.02195
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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