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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007396 ID=TCONS_00007396|Name=TCONS_00007396|organism=Clytia hemisphaerica|type=transcript|length=1780bp
CCTTTCTACTACTTGTTAGCCAGTTGTGGGGTGCCAAAAATAATTCCTTG
ATAACTTGAGAATTCTTGCCTTCGTCTAAGTCTTGACCAGCTATCTGTAC
AGCTGATGCTCTACTTGTGATAATGACTCGATAAAAACATACACACCCTA
GGAACCATATAGGAACAAAAAGAACAtataatagaaaataaaatattatc
ttataaattaatttgattttataCTTAAATCTATCGAAAACGATATGAAA
TACTTAAACTTATATATAAAATTGACGTGAATCAAGAAATCATTCTTGCG
TCATGATTTATTACTGTTTAACTAGGCCCATACCCCTCTCTAAGGAAACA
ATATATGTAAACTTGCCTTTTGCCATTAAACTAATACCCATAAATAAGGA
GAGGGCTTGGATACCTGCAAGGGGAAGCAACCATCATGGAGGACCCAGAC
ACTGTGAGAAAGATGTCACGTATAGCGCCCTAACCCCAGTGTCCCCGCCC
TACCACGGACCNAGAGGAGGTCTCTGAGGACACACCCCGCAATGACGGGA
AGCCAGCCCTGCCTAACCCCAGACCCGGCCACGGAGGAGGTCACTGAGGA
CACACCCCGCAATGACGGGAAGCCAGCCCAGCCCTCCCACAGAACCTGTG
GTGGAGGAGGTCTCTGAGGACACGCCCCGCGCCCACGGGGAGCCAGCCCA
GCGTACCCACAGACCCGGCCACGGAGGAGGTCACTGAGGACACACCCCGC
AATGACGGGAAGCCAGCCCAGCCCTCCCACAGAACCTGTGGTGGAGGAGG
TCTCTGAGGACACACCCCGCGCCCACGGGGAGCCAGCCCAGCGTACCCAC
AGACCCGGCCACGGAGGAGGTCACTGAGGACACACCCCGCAATGACGGGC
CCTTTATTGAAAGGGAAAACGGAATGATTTGGATCCCCAAAGCTGCATAA
TGCTAACAATTCTAGCCATTGGTAACTTCGTAAAACGTGTTATTAGTAGT
GCCTCCTTTACAGAAACTCCAAGCAGGATCTTTTTACTAGCCAATTATGG
TGCCAAAAGTGATTTCCTGATAACTTCAAAAGTCTTGCCTTCTTCCCAAG
ATTTGACCAGCTATCTGTACATCTGATGCTCTACTTGTGATAAGGACTCG
ATAAAAAACATACACACCCTAGGAATAATACAGTAACTAACAAAAAGAAC
ATATaatagaaaattaaatattattttataaactatttagatattatacc
TAAATATATCGCAGACGATATGAAATACTTAATATGCATTTTAACTTGCC
TCTGGTCTGCAACATGAGGCGTCCATACAGCCTTGTTGACAGGCTATGTA
AACCATCCAATCAATGCCGATTGTTTATTATGTACTGATCACGATCTTTC
TTTATGCTTCTATCTAAAACCGGATCATTCTCAACTTGCCGCTCACTGCA
ACTAGGATACATAGCCTTCTCCAAATTAACCTTTGTCAGTCGACTGACAG
AGAACTTCCGTAGTTGAGTAATACAATATCTAAATTAATATAAATGCCGT
AGAAACCCACTCTAATTTGACGTGCACTGTCTGTGTACAACCTTGCCTAG
GTTGACACCAGCCTTCAAGCCAAGAAGATCACTCTGctgtaaaaattttt
caattaaccGGGTCGCAGATGTTTGGTAacgtgaaataaaataaaatatt
ccgGTTTTGTGTTTGATTATTACATCGAGTTGAGGATAagtttatgctta
taaaaagttgaaaaatttgtttGTAAACTA Run BLAST on NCBI transcript from alignment at sc0000076:105217..107154- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007396 ID=TCONS_00007396|Name=TCONS_00007396|organism=Clytia hemisphaerica|type=transcript|length=1938bp|location=Sequence derived from alignment at sc0000076:105217..107154- (Clytia hemisphaerica)
CCTTTCTACTACTTGTTAGCCAGTTGTGGGGTGCCAAAAATAATTCCTTG
ATAACTTGAGAATTCTTGCCTTCGTCTAAGTCTTGACCAGCTATCTGTAC
AGCTGATGCTCTACTTGTGATAATGACTCGATAAAAACATACACACCCTA
GGAACCATATAGGAACAAAAAGAACATATAATAGAAAATAAAATATTATC
TTATAAATTAATTTGATTTTATACTTAAATCTATCGAAAACGATATGAAA
TACTTAAACTTATATATAAAATTGACGTGAATCAAGAAATCATTCTTGCG
TCATGATTTATTACTGTTTAACTAGGCCCATACCCCTCTCTAGGGAAACA
ATATATGTAAACTNNNNNNNNNNATTTTATACTTAAATCTATCGAAAACG
ATATGAAATACTTAAACTTATATATAAAATTGACGTGAATCAAGAAATCA
TTCTTCCGTCATGATTTATTACTGTTTAACTAGGCCCATACCCCTCTCTA
AGGAAACAATATATGTAAACTTGCCTTTTGCCATTAAACTAATACCCATA
AATAAGGAGAGGGCTTGGATACCTGCAAGGGGAAGCAACCATCATGGAGG
ACCCAGACACTGTGAGAAAGATGTCACGTATAGCGCCCTAACCCCAGTGT
CCCCGCCCTACCACGGACCNAGAGGAGGTCTCTGAGGACACACCCCGCAA
TGACGGGAAGCCAGCCCTGCCTAACCCCAGACCCGGCCACGGAGGAGGTC
ACTGAGGACACACCCCGCAATGACGGGAAGCCAGCCCAGCCCTCCCACAG
AACCTGTGGTGGAGGAGGTCTCTGAGGACACGCCCCGCGCCCACGGGGAG
CCAGCCCAGCGTACCCACAGACCCGGCCACGGAGGAGGTCACTGAGGACA
CACCCCGCAATGACGGGAAGCCAGCCCAGCCCTCCCACAGAACCTGTGGT
GGAGGAGGTCTCTGAGGACACACCCCGCGCCCACGGGGAGCCAGCCCAGC
GTACCCACAGACCCGGCCACGGAGGAGGTCACTGAGGACACACCCCGCAA
TGACGGGCCCTTTATTGAAAGGGAAAACGGAATGATTTGGATCCCCAAAG
CTGCATAATGCTAACAATTCTAGCCATTGGTAACTTCGTAAAACGTGTTA
TTAGTAGTGCCTCCTTTACAGAAACTCCAAGCAGGATCTTTTTACTAGCC
AATTATGGTGCCAAAAGTGATTTCCTGATAACTTCAAAAGTCTTGCCTTC
TTCCCAAGATTTGACCAGCTATCTGTACATCTGATGCTCTACTTGTGATA
AGGACTCGATAAAAAACATACACACCCTAGGAATAATACAGTAACTAACA
AAAAGAACATATAATAGAAAATTAAATATTATTTTATAAACTATTTAGAT
ATTATACCTAAATATATCGCAGACGATATGAAATACTTAATATGCATTTT
AACTTGCCTCTGGTCTGCAACATGAGGCGTCCATACAGCCTTGTTGACAG
GCTATGTAAACCATCCAATCAATGCCGATTGTTTATTATGTACTGATCAC
GATCTTTCTTTATGCTTCTATCTAAAACCGGATCATTCTCAACTTGCCGC
TCACTGCAACTAGGATACATAGCCTTCTCCAAATTAACCTTTGTCAGTCG
ACTGACAGAGAACTTCCGTAGTTGAGTAATACAATATCTAAATTAATATA
AATGCCGTAGAAACCCACTCTAATTTGACGTGCACTGTCTGTGTACAACC
TTGCCTAGGTTGACACCAGCCTTCAAGCCAAGAAGATCACTCTGCTGTAA
AAATTTTTCAATTAACCGGGTCGCAGATGTTTGGTAACGTGAAATAAAAT
AAAATATTCCGGTTTTGTGTTTGATTATTACATCGAGTTGAGGATAAGTT
TATGCTTATAAAAAGTTGAAAAATTTGTTTGTAAACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007396-exon-sc0000076-1575043694:106830..107154 | TCONS_00007396-exon-sc0000076-1575043694:106830..107154 | Clytia hemisphaerica | exon |
| TCONS_00007396-exon-sc0000076-1575043694:105217..106671 | TCONS_00007396-exon-sc0000076-1575043694:105217..106671 | Clytia hemisphaerica | exon |
| TCONS_00007396-exon-sc0000076-1510915933:106830..107154 | TCONS_00007396-exon-sc0000076-1510915933:106830..107154 | Clytia hemisphaerica | exon |
| TCONS_00007396-exon-sc0000076-1510915933:105217..106671 | TCONS_00007396-exon-sc0000076-1510915933:105217..106671 | Clytia hemisphaerica | exon |
| TCONS_00007396-exon-sc0000076-1491911889:106830..107154 | TCONS_00007396-exon-sc0000076-1491911889:106830..107154 | Clytia hemisphaerica | exon |
| TCONS_00007396-exon-sc0000076-1491911889:105217..106671 | TCONS_00007396-exon-sc0000076-1491911889:105217..106671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000076 | supercontig | sc0000076:105217..107154 - |
Blast
The following BLAST results are available for this feature:
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