TCONS_00007407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007407
Unique NameTCONS_00007407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007407 ID=TCONS_00007407|Name=TCONS_00007407|organism=Clytia hemisphaerica|type=transcript|length=953bp
TGTTGATGAAAAATCATTCTTAAGACAACCATCACAAGGATAAACATCAA
CAAAAGCAAAGCATTGAAAGATGAAGATTTGGAAAGCTTTATTACTTATC
TCCTTCTTGGTGTACACTGTACATTGTGAAGAAGAAGAAGCGAATAAAGA
TGAATTGCAAACAAACGACGTTGAAACTGCTCTGCAAAGTGACGAATTAC
CATCAAATGACGAAGAAACAAATGACGAAGAAACAAATGACGCGTTAGAT
GAAGAGGAAAGTGACGAAGAAGCGAATGACCAAAATGACGAAGAaacaaa
tgaagaagaagaagcaaCTGAAGAACACGATGAAGAGAGTGACAAAAAGA
ACGAAGATGAGCAAAATGATTTACAACAAAGCCAAGACCCTCGTCACAAG
ACATtgatcaaatatttcaaaatctatcTCTACAAAAACCGAAAAGTACG
TTGCTACATCACCAAACGTATCGTCCGCAAGTTCCGCAAAGTACGTTGTG
TACGTAGGAAATTTTACTACGGCAAACGAGTCTGCACAAAATACTTGGTT
CAAATCTTCAGCCGTGTCCGATACCAACGTATCTGTATTTTATGCAGTGC
ATACCGATTAAAGAAATGTGTCATCAGATACAGATACAAAAAATGCATCT
TGCTCAAAAGAATCTacaaaaaatgttacaaaaaatTCGGACGACCTTAC
TACAGAAATATCCTTCACAAGCAATTTTTCACTTACCCAAAGAGAAGATA
TTGAAGAACCTGAACCATCACAAAAATCCAGACCAACCATGCAGCCGGAA
CAACCAATTAAACGATCTTTAAAGGgattaaatttataatttttgtcatt
ttatctaagagcatttaatttttaatgacattttcttcttttgtattatt
attattttgcattgcatttatattttctgaaagatcTAGATCTAAAATTA
TGA
Run BLAST on NCBI

protein sequence of TCONS_00007407-protein

>TCONS_00007407-protein ID=TCONS_00007407-protein|Name=TCONS_00007407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MKIWKALLLISFLVYTVHCEEEEANKDELQTNDVETALQSDELPSNDEET
NDEETNDALDEEESDEEANDQNDEETNEEEEATEEHDEESDKKNEDEQND
LQQSQDPRHKTLIKYFKIYLYKNRKVRCYITKRIVRKFRKVRCVRRKFYY
GKRVCTKYLVQIFSRVRYQRICILCSAYRLKKCVIRYRYKKCILLKRIYK
KCYKKFGRPYYRNILHKQFFTYPKRRY
Run BLAST on NCBI

transcript from alignment at sc0000076:548064..549947-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007407 ID=TCONS_00007407|Name=TCONS_00007407|organism=Clytia hemisphaerica|type=transcript|length=1884bp|location=Sequence derived from alignment at sc0000076:548064..549947- (Clytia hemisphaerica)
TGTTGATGAAAAATCATTCTTAAGACAACCATCACAAGGATAAACATCAA
CAAAAGCAAAGCATTGAAAGATGAAGATTTGGAAAGCTTTATTACTTATC
TCCTTCTTGGTGTACACTGTACATTGTAAGTTGTTTTTACATTTTATAAA
GTTTTGTTGATACAATACTTATTATACAATAAGCGTCCCCCCCCCCGAAT
TAATTTTTCACCAAGGACATTCTTATTCCAACCCGCTTATTAATTTTTGA
GAAAATATTTTTGAAAGTTCCATATTTTCCATTTATGCTGTATGACATTT
TTGTTCCAACCCCTTCCCTGATTATTAAGTTTCTAACCCCTGCTTATTAG
GTACCCGAGAGTTGTGCATTGAGAGGGCTTTGTTACATTCCCTATAAGCC
CAACTAAGAAATAGCCCACGGGGAATTCAGTAGATGTTGATTGTTGACTT
AAAAACTCCAGGTAGTACTGGAAATCTCCCGTTAAAGTGTTCGGGATTAA
ACTTAGGCAGTGAATCTAAATGGCTCGCGTTACCTTTCTTTCTTACCCTC
GTAATAAAGATGCCTTTCAGACAGAAGAATTCCTGTTCCTCTGCTCTAGT
AAGAATCCCTAAGCCATTATGTATGAATTATCAATGAACATTTCAGGTTT
ATATCCGGTTACTTCTTCAGAGTATTCATTTTTACAATTCATGTTATAAT
AAAGGTGAAGAAGAAGAAGCGAATAAAGATGAATTGCAAACAAACGACGT
TGAAACTGCTCTGCAAAGTGACGAATTACCATCAAATGACGAAGAAACAA
ATGACGAAGAAACAAATGACGCGTTAGATGAAGAGGAAAGTGACGAAGAA
GCGAATGACCAAAATGACGAAGAAACAAATGAAGAAGAAGAAGCAACTGA
AGAACACGATGAAGAGAGTGACAAAAAGAACGAAGATGAGCAAAATGATT
TACAACAAAGCCAAGGTATGCATTGGAAATCTCCTCCACAAATTGTGCAC
CCCTGTTGTCTACGCTTCTGGTCTAGATTATTGATTCCTATAAAACGCCC
CTACTTTTAGAACTGGGTTTACCTTTCTTGCGAGAATTCTTTTGCCAAGC
CTAATTCACGGGTTTCCTCTCAAAAAGTCTCCAAATCCTATCTACTTTCG
AACCAATCACATGCAGTTGAGTCCATTTTGCTTCATTTTTGAATTTTTAA
AAATCTTGTCTAAATGCTGTCTAAATTTCAAAAATGCAACAATAAAAACC
TTCTGTTATCAACAAAATTCATATGAAAAGGTTGACTTCTTCATTTTTGT
AATTCTTCTTTTTCCAGACCCTCGTCACAAGACATTGATCAAATATTTCA
AAATCTATCTCTACAAAAACCGAAAAGTACGTTGCTACATCACCAAACGT
ATCGTCCGCAAGTTCCGCAAAGTACGTTGTGTACGTAGGAAATTTTACTA
CGGCAAACGAGTCTGCACAAAATACTTGGTTCAAATCTTCAGCCGTGTCC
GATACCAACGTATCTGTATTTTATGCAGTGCATACCGATTAAAGAAATGT
GTCATCAGATACAGATACAAAAAATGCATCTTGCTCAAAAGAATCTACAA
AAAATGTTACAAAAAATTCGGACGACCTTACTACAGAAATATCCTTCACA
AGCAATTTTTCACTTACCCAAAGAGAAGATATTGAAGAACCTGAACCATC
ACAAAAATCCAGACCAACCATGCAGCCGGAACAACCAATTAAACGATCTT
TAAAGGGATTAAATTTATAATTTTTGTCATTTTATCTAAGAGCATTTAAT
TTTTAATGACATTTTCTTCTTTTGTATTATTATTATTTTGCATTGCATTT
ATATTTTCTGAAAGATCTAGATCTAAAATTATGA

Coding sequence (CDS) from alignment at sc0000076:548064..549947-

>TCONS_00007407 ID=TCONS_00007407|Name=TCONS_00007407|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000076:548064..549947- (Clytia hemisphaerica)
ATGAAGATTTGGAAAGCTTTATTACTTATCTCCTTCTTGGTGTACACTGT
ACATTGTGAAGAAGAAGAAGCGAATAAAGATGAATTGCAAACAAACGACG
TTGAAACTGCTCTGCAAAGTGACGAATTACCATCAAATGACGAAGAAACA
AATGACGAAGAAACAAATGACGCGTTAGATGAAGAGGAAAGTGACGAAGA
AGCGAATGACCAAAATGACGAAGAAACAAATGAAGAAGAAGAAGCAACTG
AAGAACACGATGAAGAGAGTGACAAAAAGAACGAAGATGAGCAAAATGAT
TTACAACAAAGCCAAGACCCTCGTCACAAGACATTGATCAAATATTTCAA
AATCTATCTCTACAAAAACCGAAAAGTACGTTGCTACATCACCAAACGTA
TCGTCCGCAAGTTCCGCAAAGTACGTTGTGTACGTAGGAAATTTTACTAC
GGCAAACGAGTCTGCACAAAATACTTGGTTCAAATCTTCAGCCGTGTCCG
ATACCAACGTATCTGTATTTTATGCAGTGCATACCGATTAAAGAAATGTG
TCATCAGATACAGATACAAAAAATGCATCTTGCTCAAAAGAATCTACAAA
AAATGTTACAAAAAATTCGGACGACCTTACTACAGAAATATCCTTCACAA
GCAATTTTTCACTTACCCAAAGAGAAGATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004167XLOC_004167Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007407-proteinTCONS_00007407-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007407-exon-sc0000076-1575043694:549823..549947TCONS_00007407-exon-sc0000076-1575043694:549823..549947Clytia hemisphaericaexon
TCONS_00007407-exon-sc0000076-1575043694:548983..549243TCONS_00007407-exon-sc0000076-1575043694:548983..549243Clytia hemisphaericaexon
TCONS_00007407-exon-sc0000076-1575043694:548064..548630TCONS_00007407-exon-sc0000076-1575043694:548064..548630Clytia hemisphaericaexon
TCONS_00007407-exon-sc0000076-1510915933:549823..549947TCONS_00007407-exon-sc0000076-1510915933:549823..549947Clytia hemisphaericaexon
TCONS_00007407-exon-sc0000076-1510915933:548983..549243TCONS_00007407-exon-sc0000076-1510915933:548983..549243Clytia hemisphaericaexon
TCONS_00007407-exon-sc0000076-1510915933:548064..548630TCONS_00007407-exon-sc0000076-1510915933:548064..548630Clytia hemisphaericaexon
TCONS_00007407-exon-sc0000076-1491911889:549823..549947TCONS_00007407-exon-sc0000076-1491911889:549823..549947Clytia hemisphaericaexon
TCONS_00007407-exon-sc0000076-1491911889:548983..549243TCONS_00007407-exon-sc0000076-1491911889:548983..549243Clytia hemisphaericaexon
TCONS_00007407-exon-sc0000076-1491911889:548064..548630TCONS_00007407-exon-sc0000076-1491911889:548064..548630Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:548064..549947 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.333796	0.139502	0.431932	0.158467	0	0.101631	0.122614	0.286973	0.281283	0.547509	0.0966229	0.571645	389.415	150.086	12.2118	47.597	42.5985	106.33	0.253452	0.530438	0.276628	0.337324	0.0546748	0.0497074	0.153592	0.18277	0	0	0.105854	0.053924
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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