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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007410 ID=TCONS_00007410|Name=TCONS_00007410|organism=Clytia hemisphaerica|type=transcript|length=3256bpRun BLAST on NCBI protein sequence of TCONS_00007410-protein >TCONS_00007410-protein ID=TCONS_00007410-protein|Name=TCONS_00007410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp MSKRKATTNLASTASTVDFKKLTVPLLKQECQQRQLEITGKKAELIKRLQRun BLAST on NCBI transcript from alignment at sc0000076:603604..634409- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007410 ID=TCONS_00007410|Name=TCONS_00007410|organism=Clytia hemisphaerica|type=transcript|length=30806bp|location=Sequence derived from alignment at sc0000076:603604..634409- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000076:603604..634409- >TCONS_00007410 ID=TCONS_00007410|Name=TCONS_00007410|organism=Clytia hemisphaerica|type=CDS|length=21024bp|location=Sequence derived from alignment at sc0000076:603604..634409- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007410 vs. Swiss-Prot (Human)
Match: PARP3 (Poly [ADP-ribose] polymerase 3 OS=Homo sapiens GN=PARP3 PE=1 SV=4) HSP 1 Score: 450.669 bits (1158), Expect = 1.798e-145 Identity = 251/497 (50.50%), Postives = 335/497 (67.40%), Query Frame = 3
Query: 336 FKVDTECPYYH--GAQIVDDYDCMLNQTNIGANNNKFYIIQLFSIGTNYWV-WTRWGRVGDSGQNALKGPTSLDAAKKEFEKKFRDKTKNKWEDRANFKPASGKYTMIEIDTGADSQDIAEMENKLTTLDDVDGPXXXXXXXQTSPCTLDKETQDLIKLIFDNDMFKEAMANFDIDVKKMPLGKLSKAQIAKGFXXXXXXXXXIKKNARNTTAMNNLTSKFFTLIPHNFGRKRPPTINGLEILQKKMEMLMVLGDIEVAQSLQKGPVKTEN-GDVPHPLDANYGLLNCGLTLVDKKSETYKIIDTYVQNTKYG---STLLEVWEVDRDGEDKRFDEHKDIEHRKLLWHGTNVAVVVAILKSGLRIMPHSGGRVGRGIYFASEHSKSAAYVGSSRDGT---GIMFLNEVALGKQHIIHQDDSSLRAAPKGSDSVLAQGCREPDPSKEVTIQMDGNDVIVPQGKPI-SNDLDYTSFHQSEYLVYKESQCRIRYLLKFKM 1793
+VD CP G Q+ +DY+C LNQTNI NNNKFYIIQL ++ W RWGRVG+ GQ+ + T L+ AKK+FEKKFR+KTKN W +R +F GKYT+IE+ ++Q+ + VD +K+ PC+LD TQ LI IF +MFK MA D+DVKKMPLGKLSK QIA+GFE LE LEE +K ++ L+S F+T+IPHNFG +PP IN E+LQ K +ML+VL DIE+AQ+LQ + + +VPHPLD +Y LL C L L+D + YK+I TY++ T TL +W+V+++GE+ RF H + +RKLLWHGTN+AVV AIL SGLRIMPHSGGRVG+GIYFASE+SKSA YV + G G MFL EVALG++H I+ D+ SL++ P G DSV+A+G EPDP+++ +++DG V+VPQG+P+ + ++F QSEYL+Y+ESQCR+RYLL+ +
Sbjct: 46 IRVDPTCPLSSNPGTQVYEDYNCTLNQTNIENNNNKFYIIQLLQDSNRFFTCWNRWGRVGEVGQSKINHFTRLEDAKKDFEKKFREKTKNNWAERDHFVSHPGKYTLIEVQAEDEAQE---------AVVKVDRGPVRTVTKRVQPCSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKGPTDGGQSLEELSSHFYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLADIELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNHRCPTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPHSGGRVGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLEVHL 533 The following BLAST results are available for this feature:
BLAST of TCONS_00007410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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