|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007412 ID=TCONS_00007412|Name=TCONS_00007412|organism=Clytia hemisphaerica|type=transcript|length=2151bpRun BLAST on NCBI protein sequence of TCONS_00007412-protein >TCONS_00007412-protein ID=TCONS_00007412-protein|Name=TCONS_00007412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp MEKVSRCFAQKSRHLLLSTGGKVSRINTRALTSLCPEDGHFAEPKMVTSFRun BLAST on NCBI transcript from alignment at sc0000076:681808..692542- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007412 ID=TCONS_00007412|Name=TCONS_00007412|organism=Clytia hemisphaerica|type=transcript|length=10735bp|location=Sequence derived from alignment at sc0000076:681808..692542- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000076:681808..692542- >TCONS_00007412 ID=TCONS_00007412|Name=TCONS_00007412|organism=Clytia hemisphaerica|type=CDS|length=1521bp|location=Sequence derived from alignment at sc0000076:681808..692542- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007412 vs. Swiss-Prot (Human)
Match: GABT (4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens GN=ABAT PE=1 SV=3) HSP 1 Score: 416.387 bits (1069), Expect = 6.410e-137 Identity = 208/482 (43.15%), Postives = 309/482 (64.11%), Query Frame = 3
Query: 231 CFAQKSRHLLLSTGGKVSRINTRALTSLCPEDGHFAEPKMVTSFPGPKVLEHKGRLAKHQRVDQLVMFCDFENSKGNFLQDIDGNVFLDIFQQIASIPLGYNHQALLDCVKTEEFQKILINRPAQGLSPGKEMMDRMENTLMKVAPRGLKHVQQMMCGACANENAMKAVFSRYNAMRRGSIDPTPLELETCMDGRAPGAPDDLCIVAFDKAFHGRSLATFAISRSKAMHKFDYPSWHWPTATFPNLKYPLEDNVQENREEEQRCLESLDNLIRDSNASGKYVAGLIVEPIQSEGGDRHASNEFFQGVQAILHKYNASLIVDEVQTGGGASGEWWLHEQWNLPVPPDVVTXXXXXXXXXXXXXXXXXPQHPMRIQNTWLGDPARLAMLDAVVQTVEKDDLMTRTKEAGVELMKGINQLQNDFPEYVSKGRGNGTICAFDMPSTEKRDQFLGLCRNEGLGVIGSGDIAVRFRPALIFSEAHAKM 1676
C Q S LL+ +S+ + + P M T PGP+ E +L Q + + FC++E S+GN+L D+DGN LD++ QI+S+P+GY+H ALL ++ + + +NRPA G+ P + ++++ +L+ VAP+G+ + M CG+C+NENA+K +F Y + RG + ELETCM +APG PD I++F AFHGR++ A + SKA+HK D PS+ WP A FP LKYPLE+ V+EN++EE RCLE +++LI K VAG+IVEPIQSEGGD HAS++FF+ ++ I K+ + +VDEVQTGGG +G++W HE W L P DV+TFSKK + GGFF +EE P P RI NTWLGDP++ +L V+ ++++DL+ AG L+ G+ LQ +P+++S+ RG GT C+FD P R++ + + RN+G+ + G GD ++RFRP L+F + HA +
Sbjct: 12 CSFQHSYRLLVPGSRHISQAAAKVDVEF-----DYDGPLMKTEVPGPRSQELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLIQQPQNASMFVNRPALGILPPENFVEKLRQSLLSVAPKGMSQLITMACGSCSNENALKTIFMWYRSKERGQRGFSQEELETCMINQAPGCPD-YSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARKHGCAFLVDEVQTGGGCTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLNNAAHAGKALLTGLLDLQARYPQFISRVRGRGTFCSFDTPDDSIRNKLILIARNKGVVLGGCGDKSIRFRPTLVFRDHHAHL 487 The following BLAST results are available for this feature:
BLAST of TCONS_00007412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.