TCONS_00007423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007423
Unique NameTCONS_00007423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007423 ID=TCONS_00007423|Name=TCONS_00007423|organism=Clytia hemisphaerica|type=transcript|length=568bp
TAAGAAATAGCACTGTAATAAGAAATGAATAGACTGATTAATCCATTATC
AAGGTTGCTCAGAACATGTAATACTCCAATTCAAAATGTTGCACCTTTGG
CAAGATATCTTTCTTCAAATGAAGGAAAGAGTGAAGGGGaacttcacatt
gaaaatgttttaaaaagtaaaatgaacGTTGCTGATATTCAAGTCAATGA
TATTTCTGGTGGCTGTGGATCAATGTATGAAGTTTATGTATGCTCCAatg
attttaaaggaaaacgAATGGTTCAACAACATAGACTTGTTacggaaatt
ttgaaaagtgaagTAGCAGAAATGCATGGACTACGTATTATGACCTCTGT
TCCAGAAAGTTGATTTGTGAAAAGTTGAGGAAATTTTAGAGTGCATGAAA
TGATGTGGATTTTGAATCActactttatatttttgttttgtaatttaaat
tttattgtaatttttacctcaataaaaagaatatatcatgtgaaattttt
ctaatttattcaaacttttcataattttagggagtgcattttttaaatga
tcagaTTCCTATATTAAT
Run BLAST on NCBI

protein sequence of TCONS_00007423-protein

>TCONS_00007423-protein ID=TCONS_00007423-protein|Name=TCONS_00007423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MNRLINPLSRLLRTCNTPIQNVAPLARYLSSNEGKSEGELHIENVLKSKM
NVADIQVNDISGGCGSMYEVYVCSNDFKGKRMVQQHRLVTEILKSEVAEM
HGLRIMTSVPES
Run BLAST on NCBI

transcript from alignment at sc0000076:423673..424240

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007423 ID=TCONS_00007423|Name=TCONS_00007423|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at sc0000076:423673..424240 (Clytia hemisphaerica)
ATTAATATAGGAAtctgatcatttaaaaaatgcactccctaaaattatga
aaagtttgaataaattagaaaaatttcacatgatatattctttttattga
ggtaaaaattacaataaaatttaaattacaaaacaaaaatataaagtagT
GATTCAAAATCCACATCATTTCATGCACTCTAAAATTTCCTCAACTTTTC
ACAAATCAACTTTCTGGAACAGAGGTCATAATACGTAGTCCATGCATTTC
TGCTActtcacttttcaaaatttccgtAACAAGTCTATGTTGTTGAACCA
TTcgttttcctttaaaatcatTGGAGCATACATAAACTTCATACATTGAT
CCACAGCCACCAGAAATATCATTGACTTGAATATCAGCAACgttcatttt
actttttaaaacattttcaatgtgaagttCCCCTTCACTCTTTCCTTCAT
TTGAAGAAAGATATCTTGCCAAAGGTGCAACATTTTGAATTGGAGTATTA
CATGTTCTGAGCAACCTTGATAATGGATTAATCAGTCTATTCATTTCTTA
TTACAGTGCTATTTCTTA

Coding sequence (CDS) from alignment at sc0000076:423673..424240

>TCONS_00007423 ID=TCONS_00007423|Name=TCONS_00007423|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000076:423673..424240 (Clytia hemisphaerica)
TCAACTTTCTGGAACAGAGGTCATAATACGTAGTCCATGCATTTCTGCTA
cttcacttttcaaaatttccgtAACAAGTCTATGTTGTTGAACCATTcgt
tttcctttaaaatcatTGGAGCATACATAAACTTCATACATTGATCCACA
GCCACCAGAAATATCATTGACTTGAATATCAGCAACgttcattttacttt
ttaaaacattttcaatgtgaagttCCCCTTCACTCTTTCCTTCATTTGAA
GAAAGATATCTTGCCAAAGGTGCAACATTTTGAATTGGAGTATTACATGT
TCTGAGCAACCTTGATAATGGATTAATCAGTCTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004181XLOC_004181Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007423-proteinTCONS_00007423-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007423-exon-sc0000076-1491911889:423673..424240TCONS_00007423-exon-sc0000076-1491911889:423673..424240Clytia hemisphaericaexon
TCONS_00007423-exon-sc0000076-1510915933:423673..424240TCONS_00007423-exon-sc0000076-1510915933:423673..424240Clytia hemisphaericaexon
TCONS_00007423-exon-sc0000076-1575043694:423673..424240TCONS_00007423-exon-sc0000076-1575043694:423673..424240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:423673..424240 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
82.419	72.8548	55.1634	65.9011	63.5695	42.0192	37.0996	42.4637	39.2234	30.3267	30.1366	28.4984	12.882	14.8115	20.4821	28.2434	37.3159	47.4483	9.97993	7.9149	30.2889	27.9631	80.563	66.2385	22.4938	19.8858	30.0826	20.8248	39.5969	41.3488
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002634BolA
Blast
[Close]
BLAST of TCONS_00007423 vs. Swiss-Prot (Human)
Match: BOLA3 (BolA-like protein 3 OS=Homo sapiens GN=BOLA3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.084e-24
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  127 KSEGELHIENVLKSKMNVAD-IQVNDISGGCGSMYEVYVCSNDFKGKRMVQQHRLVTEILKSEVAEMHGLRIMTSVPE 357
            ++EGEL +  +LK K   A  I+V DISGGCG+MYE+ + S +FK KR VQQH++V + LK E+ EMHGLRI TSVP+
Sbjct:   29 QTEGELRVTQILKEKFPRATAIKVTDISGGCGAMYEIKIESEEFKEKRTVQQHQMVNQALKEEIKEMHGLRIFTSVPK 106
The following BLAST results are available for this feature:
BLAST of TCONS_00007423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BOLA32.084e-2456.41BolA-like protein 3 OS=Homo sapiens GN=BOLA3 PE=1 ... [more]
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