TCONS_00007457 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007457
Unique Name	TCONS_00007457
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1918

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000077:221710..226891+
coding sequence from alignment at sc0000077:221710..226891+

transcript sequence

>TCONS_00007457 ID=TCONS_00007457|Name=TCONS_00007457|organism=Clytia hemisphaerica|type=transcript|length=1918bp
TCGACCCAACACGCTACTGGTGGTAGATAAGCTAAAATGACTacctcttt
tctttttcttagtaTACATTGGTCGAAAAGTTTTGTCTTTTGTGTTCGGA
AATGCCGTCATTCACGAGCTGTACACTTCGGCTGCTGGGTTCTATTTATT
ATGGCTTTTCATGAGAATGTTGTCCGCCGTTTCTGCATGGTATCCTGCAG
GACTGGAAGCGCTCTACACAAAAGTCAAGAATTTCGCTACAATGGTGTTG
AAGATAATAGTGGCTTCGATTGCTGTGCTGTTGGTCATTCCCTTATTCCT
GGGAATCCTCTTTGAATTTGTAGTGGTGATTCCTTTACGTGTACCTCTCG
ACCAAACTGCTCTCTTGTATATATGGCAGGATTGGGCGTTAGGAGTATTA
CATTTGAAGATTTTATGTGCTTTGATCATGGTCGGTCCTGATTGGTGGTT
GCGTGATGCAATAGATAGGGCATATCGAAATGGGTTTGCGAATCTTGATT
TAATGTTTATCCTACAAAAGATCGTGTATCCTGTAACCGTCTCCTTGTTG
TTGGCAATTACTGCGCCTTATGTCGCCGTTGCCGGTGTTATGCCGTTGCT
CGGTTTCGAGAAGTCGACAATCGTGTTATGTTTACATCGCGTGTATCCTT
TGTTGATGTTGTCTATTTCCGTCATTGGAGTTCTACTCTTCCAAGGGAAA
CAATTCAAAGCACTGTATGAGAAAATACGGAACGAAAAGTACCTGATAGG
AAAGGTTCTCGTGAATTATGAACCTCGGAAAACGAAGTCAATTACAAGTA
GCAGTGCAGCAGCAACAGAGACCCAGTGAAAAGTGAAATATGCATTTTGT
TGACATGGTCTGGATGAAGATCAATATGTTGTTGAAATTTCGATGGTTAG
GTGGACCCAATGGAGATAATAAAAGAAGGAGATAAAGATCAGTTTCGATT
GGCGGAGGATGTAAATCGCGTCATCTGATTGGTCAGGAATGAAAAGAGAA
GCTTTTGGATTGGTGGAGATCGAAAAGTTGAGTCAACTGATGTCGTCGAG
TATGGGCTGTACAAGGACAATATTTGAAAGACAAAAAAAGTATGCTAGAT
AGATTTCGTACCAATCTATTTCGGTTAAAAGAGAAACACTTAAATTCTTT
CATATCATAAAGTTGTTTTATGGACTTGTTTTGCGATAACATGAAAACTA
AAATGATGTTGTTTCCGAGCCTGTTGTGCGAAAGATAAAAGTTAtaattt
ttaggtaaaaaataGGCTGATTCCCAATTTTAGTCCAcctgaaaatttaa
aacttaggcgaaaataaaaaaatgtagtgtacCCGGTATGcgagtgaagg
aaaaaagctctcatgcagtcggccggaaaaaaaatttttgctatttttta
taacttaagatcattgaaatataactttaaataaaacttttatgtacaaa
cagtatgaagtaagccctggaTACCAATGTATCAACTATTAAcgaacaaa
aatttatttacaagcgggaatatctaaccaaacgacgtttgatagcttga
acggtcaacttgattttctttatgatgaaccatatagatgaacccataat
gcggccgggtcagaaacaaaattttcacccggccggtttccggaaacaac
attttttttattttcgccttattaaaatgtttttaccaatattatTTAGA
GCTTACACGAACTTTGtttttgcaaaaagttttaGAATTAGATCCAGCCA
TACTTTTCTGGAAGCTcataattttgagttgattAAATAGTGTAAATTAG
ATCTTTGCGATATTAATGGGTAGCTGTTTTTATTAAGCTCTTTTAAGCTC
ATCTAATTtagtttttaaaatcaaaatctcggtaaaatttcaaagaaatt
caaattcaaattttcaac

Run BLAST on NCBI

protein sequence of TCONS_00007457-protein

>TCONS_00007457-protein ID=TCONS_00007457-protein|Name=TCONS_00007457-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MRMLSAVSAWYPAGLEALYTKVKNFATMVLKIIVASIAVLLVIPLFLGIL
FEFVVVIPLRVPLDQTALLYIWQDWALGVLHLKILCALIMVGPDWWLRDA
IDRAYRNGFANLDLMFILQKIVYPVTVSLLLAITAPYVAVAGVMPLLGFE
KSTIVLCLHRVYPLLMLSISVIGVLLFQGKQFKALYEKIRNEKYLIGKVL
VNYEPRKTKSITSSSAAATETQ

Run BLAST on NCBI

transcript from alignment at sc0000077:221710..226891+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007457 ID=TCONS_00007457|Name=TCONS_00007457|organism=Clytia hemisphaerica|type=transcript|length=5182bp|location=Sequence derived from alignment at sc0000077:221710..226891+ (Clytia hemisphaerica)
TCGACCCAACACGCTACTGGTGGTAGATAAGCTAAAATGACTacctcttt
tctttttcttagtaTACATTGGTCGAAAAGTTTTGTCTTTTGTGTTCGGA
AATGCCGTCATTCACGAGCTGTACACTTCGGCTGCTGGGTTCTATTTATT
ATGGCTTTTCATGAGAATGTTGTCCGCCGTTTCTGCATGGTATCCTGCAG
GACTGGAAGCGCTCTACACAAAAGTCAAGAATTTCGCTACAATGGTAAGC
ATGTTTAAAGACTTATTTCTTGGCTGAAGAAATGAAGCTACTTTGGTACC
TACCCAGAGTTCCGGATAATTTTTCCTTTGTAAAGTGACAAAAGGATAGG
TTTCCGGGGATGAGAAAGTTTAGCCGTCCTACGGTTGTAGTTTGTGCCCT
CCATCGTCGAATTTCATCTTTCCAAAAACTTTAACCAAGATCCTTAACAA
TGGCGAGTTTATGTTTTCCTGCAACGGAGACAGTAAGCTTCTAATTTGTC
TATaacctgactgactgaggacgatgACAAATCAACACTTTAGCGTCCTC
AATTTTGCGGGTCAATACTGCGGACTGTTCCAAATCGTTTCATTCATTCC
GCTGttttcaaaagtgcaaatacataaactcgctaatgtcgATAAGTTTT
CTCAAAAGAAACATATTTCATGAACTTCGAAAAGTTTTAACATTCGAGCA
TCCCACAAGTTAACAGATATTCTGAACCTAGATATATTTAGGAAGGCTAA
CGTTCTAGCATATAGAAGGGCACTATTACTTATTACACAATTTTCATTGA
TTGTTTTTTCTAGGTGTTGAAGATAATAGTGGCTTCGATTGCTGTGCTGT
TGGTCATTCCCTTATTCCTGGGAATCCTCTTTGAATTTGTAGTGGTGATT
CCTTTACGTGTACCTCTCGACCAAACTGCTCTCTTGTATATATGGCAGGT
GAGTGTACTTGCGGTGATTCCCTTGTCTCTCAAAATTCTCTTCTCCCGTT
GATACTACAGTGTTAAAAGTTACGGTAGAATTTTCGAATAAATTAACGGG
AAAGGGGGACCTAATTGGGTTGGAAATCGTACTTCTGAGTACCTCCCCCC
AAAATGAGGTAATTAGTCTGAAACGtcattcaaaaattaataaaccaGGG
AGAGGGGCAAATCAGGTCTAGAGGGggatcgaaaaaatatcaagcGCTTA
ATTATTAACGCTCTCCGTTTATtaggaacctaagagtaaggaAGGCAGAC
CAGTTCAGAAtgtaattgttttgtttatttgtgACTTTCTCAAGGATTGG
GCGTTAGGAGTATTACATTTGAAGATTTTATGTGCTTTGATCATGGTCGG
TCCTGATTGGTGGTTGCGTGATGCAATAGATAGGGTGAGTTGTGTTTTAC
ACTTTACTGTCTtaaccattgagtttgaagcctcgaaggggctagagagg
aatctccAACTTCtgtcaagcaagaaaaagcgaagccttatgtttgcCCA
GCattaagaaattttgtttgaaaaacacaaGGGTCATGTGTTCTGGGAaa
taaatggcttcatttcccatccaggagttcagatttagccccttcggggc
tttgaaCCCTTTCAGTTGCTTGGGGGATGtaaatcaagattttcaaaatg
aaattggtAGTCGACAATTTGAGATTTAGCAACGAGATGGAATGCATTGA
ATTCGAAGTTGAAATGGGCcctttcatataaaaaaaaccgCACATAGGAC
GTTGAAGATGTATACCACTTTTTTGataagcaaccgagttgctaagggtc
tagccctgaaaatggccaaaatattaagcaATTTGACCTTAGCAAACCTA
GCCCTGAAACTGAGCTTGGGACGGGGAAGCAACCAAAAATACCTAAAGAG
GCATTGTTTGGCATTAAAATTTGTACCGATGGTATTTGAATATACCTATT
TTATTATTTGGTATTTTAGACATaaaatgagatgaaatccaaaatttttg
aagttccCAGGCATTTTTGGGTCAAAATCCATAACATAAGCAACTTTTTG
CTGAAATCAGGAAAATCCTTAGCAACTTAAGCCCTACAGTAAGCTAAAAA
TTGGGACTGCTTAtataaaaatgtattttgtccagggatatttaaaaaag
aatgtgAAAAACTGCCGTGTGTTGATGTGATGCTTGTCGATAAGAAATAA
CATATCCTTCAACTCAATATAATATCATGTTGGCTTTCATTTTCAGGCAT
ATCGAAATGGGTTTGCGAATCTTGATTTAATGTTTATCCTACAAAAGATC
GTGTATCCTGTAACCGTCTCCTTGTTGTTGGCAATTACTGCGCCTTATGT
CGCCGTTGCCGGTGTTATGCCGTTGCTCGGTAAGCTCGAGATTCTATTGT
TCTTTTCAAATACTAACTCAAGGGAACTTATACTGGTTTTGTCTTTTTTC
AAGGTAGCTGTACCGCAGTATTATCCAAGTTTTTGTCGGACGCGTTTGAA
TGATCGTTTAGAAAACATTTGGATTGGTATAGTTAATTACGGTACTAGGC
TTATAATAATATACTTACCCAAGACAGTTTTAGCCGCAAAACCCCTGTTT
TTCATTCTCTTCTACTTTAAATGATTCCAGGTTTCGAGAAGTCGACAATC
GTGTTATGTTTACATCGCGTGTATCCTTTGTTGATGTTGTCTATTTCCGT
CATTGGAGTTCTACTCTTCCAAGGGAAACAATTCAAAGCACTGTATGAGA
AAATACGGAACGAAAAGTAAGACAATATTTCACAGGGGGGttggtagtaa
aatctcagacattatgacgtttactacggtggcgGTGTGACGaagaatgg
agaaaaaaaatttactacccagggtagtgaaatactaaaatgggtggtac
ccaatgaagtataagtcCGAACACTGCATGAAATATAAGTCTTTCCGGTT
TCTTGTCCTTAAAAACTTAATATTTTCGAACGTACGATTgcggaaatatc
gatttttcttacagttttttttctttaagttcttgaaaaaaagATTACCT
TTAAATATTTCTTGCTTCGAAAGGGTGGATAGttccttttgttgtttttc
attaaaaatctaaaaaatttcatgtttctagaTTGACTGCCttgcccaaa
aacttttactaccagggtagtaaaatacctcttccaagagtctgggtggt
agtaagaatccttttactactcatatgtctaagattttactaccgacccc
ccccccccctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccccctgtactT
CAACCTGAATAATTATTTGAGAGATTAGATTTCGCGTGCCGTTTGTCAAT
CatcttttggcaaaattagCACCAGTCAGTCTAAAATGAGTGGGAAGTAG
CACTGATAATGGCAATATACTTCAAATTAGCATAGATTTTTCAAACATGT
AAAACAAGGAtagtaaaagtgctgatttactgtCGTCCTTAGTCATTCAG
GATGTAGCCAAATTATAACCTTGCCGTCTCCATCGCGGAAAAATACACAT
ACATAAAATCGGTATTATAAGTATAAGGCAGATGGATGAATTAGAGTTAG
ATTCATTGaccaaaaatggatttaaattaATCTCGTGTAATCTTATGTTT
AGGTACCTGATAGGAAAGGTTCTCGTGAATTATGAACCTCGGAAAACGAA
GTCAATTACAAGTAGCAGTGCAGCAGCAACAGAGACCCAGTGAAAAGTGA
AATATGCATTTTGTTGACATGGTCTGGATGAAGATCAATATGTTGTTGAA
ATTTCGATGGTTAGGTGGACCCAATGGAGATAATAAAAGAAGGAGATAAA
GATCAGTTTCGATTGGCGGAGGATGTAAATCGCGTCATCTGATTGGTCAG
GAATGAAAAGAGAAGCTTTTGGATTGGTGGAGATCGAAAAGTTGAGTCAA
CTGATGTCGTCGAGTATGGGCTGTACAAGGACAATATTTGAAAGACAAAA
AAAGTATGCTAGATAGATTTCGTACCAATCTATTTCGGTTAAAAGAGAAA
CACTTAAATTCTTTCATATCATAAAGTTGTTTTATGGACTTGTTTTGCGA
TAACATGAAAACTAAAATGATGTTGTTTCCGAGCCTGTTGTGCGAAAGAT
AAAAGTTAtaatttttaggtaaaaaataGGCTGATTCCCAATTTTAGTCC
AcctgaaaatttaaaacttaggcgaaaataaaaaaatgtagtgtacCCGG
TATGcgagtgaaggaaaaaagctctcatgcagtcggccggaaaaaaaatt
tttgctattttttataacttaagatcattgaaatataactttaaataaaa
cttttatgtacaaacagtatgaagtaagccctggaTACCAATGTATCAAC
TATTAAcgaacaaaaatttatttacaagcgggaatatctaaccaaacgac
gtttgatagcttgaacggtcaacttgattttctttatgatgaaccatata
gatgaacccataatgcggccgggtcagaaacaaaattttcacccggccgg
tttccggaaacaacattttttttattttcgccttattaaaatgtttttac
caatattatTTAGAGCTTACACGAACTTTGtttttgcaaaaagttttaGA
ATTAGATCCAGCCATACTTTTCTGGAAGCTcataattttgagttgattAA
ATAGTGTAAATTAGATCTTTGCGATATTAATGGGTAGCTGTTTTTATTAA
GCTCTTTTAAGCTCATCTAATTtagtttttaaaatcaaaatctcggtaaa
atttcaaagaaattcaaattcaaattttcaac

Coding sequence (CDS) from alignment at sc0000077:221710..226891+

>TCONS_00007457 ID=TCONS_00007457|Name=TCONS_00007457|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at sc0000077:221710..226891+ (Clytia hemisphaerica)
ATGAGAATGTTGTCCGCCGTTTCTGCATGGTATCCTGCAGGACTGGAAGC
GCTCTACACAAAAGTCAAGAATTTCGCTACAATGGTGTTGAAGATAATAG
TGGCTTCGATTGCTGTGCTGTTGGTCATTCCCTTATTCCTGGGAATCCTC
TTTGAATTTGTAGTGGTGATTCCTTTACGTGTACCTCTCGACCAAACTGC
TCTCTTGTATATATGGCAGGATTGGGCGTTAGGAGTATTACATTTGAAGA
TTTTATGTGCTTTGATCATGGTCGGTCCTGATTGGTGGTTGCGTGATGCA
ATAGATAGGGCATATCGAAATGGGTTTGCGAATCTTGATTTAATGTTTAT
CCTACAAAAGATCGTGTATCCTGTAACCGTCTCCTTGTTGTTGGCAATTA
CTGCGCCTTATGTCGCCGTTGCCGGTGTTATGCCGTTGCTCGGTTTCGAG
AAGTCGACAATCGTGTTATGTTTACATCGCGTGTATCCTTTGTTGATGTT
GTCTATTTCCGTCATTGGAGTTCTACTCTTCCAAGGGAAACAATTCAAAG
CACTGTATGAGAAAATACGGAACGAAAAGTACCTGATAGGAAAGGTTCTC
GTGAATTATGAACCTCGGAAAACGAAGTCAATTACAAGTAGCAGTGCAGC
AGCAACAGAGACCCAGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004207	XLOC_004207	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00007457-protein	TCONS_00007457-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000077	supercontig	sc0000077:221710..226891 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.1737	22.8522	15.3215	13.9755	20.4972	15.8888	17.7041	20.1555	22.1925	19.9992	29.571	25.785	28.56	35.3246	22.7301	23.6078	22.8461	26.5324	23.908	23.9588	26.0193	25.0743	30.986	29.4932	30.6691	28.6463	17.8707	20.0701	24.4912	25.0554

Blast

[Close]

BLAST of TCONS_00007457 vs. Swiss-Prot (Human)
Match: MARH6 (E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 3.123e-59
Identity = 114/238 (47.90%), Postives = 166/238 (69.75%), Query Frame = 2

Query:   65 YIGRKVLSFVFGNAVIHELYTSAAGFYLLWLFMRMLSAVSAWYPAGLEALYTKVKNFATMXXXXXXXXXXXXXXXXXFLGILFEFVVVIPLRVPLDQTALLYIWQDWALGVLHLKILCALIMVGPDWWLRDAIDRAYRNGFANLDLMFILQKIVYPVTVSLLLAITAPYVAVAGVMPLLGFEKSTIVLCLHRVYPLLMLSISVIGVLLFQGKQFKALYEKIRNEKYLIGKVLVNYEPR 778
            + GR ++SF  G A IHELYT+A G Y+ WL +R ++ + AW P G   ++ KVK ++ M++K ++ ++ +  V+PL LG+LFE V+V PLRVPLDQT L Y WQDWALGVLH KI+ A+ ++GP WWL+  I++ Y NG  N+DL +I++K+  PV   LLL++  PYV  +GV+PLLG       L   R+YP L++ + ++ +L FQ +QFK LYE I+N+KYL+G+ LVNYE +
Sbjct:  657 FAGRWLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVMVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYIVRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMAILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERK 894

The following BLAST results are available for this feature:

BLAST of TCONS_00007457 vs. Swiss-Prot (Human)

BLAST of TCONS_00007457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MARH6	3.123e-59	47.90	E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens...	[more]

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TCONS_00007457 (transcript) - C. hemisphaerica