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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007471 ID=TCONS_00007471|Name=TCONS_00007471|organism=Clytia hemisphaerica|type=transcript|length=2317bpRun BLAST on NCBI protein sequence of TCONS_00007471-protein >TCONS_00007471-protein ID=TCONS_00007471-protein|Name=TCONS_00007471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=732bp FIETVLQTEHKSKIIILKTKLAIMTTDTVKRVAIKKDGYFHILYQLNTTSRun BLAST on NCBI transcript from alignment at sc0000077:620951..658124+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007471 ID=TCONS_00007471|Name=TCONS_00007471|organism=Clytia hemisphaerica|type=transcript|length=37174bp|location=Sequence derived from alignment at sc0000077:620951..658124+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000077:620951..658124+ >TCONS_00007471 ID=TCONS_00007471|Name=TCONS_00007471|organism=Clytia hemisphaerica|type=CDS|length=48378bp|location=Sequence derived from alignment at sc0000077:620951..658124+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007471 vs. Swiss-Prot (Human)
Match: ELMO2 (Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2 PE=1 SV=2) HSP 1 Score: 490.73 bits (1262), Expect = 5.019e-162 Identity = 282/727 (38.79%), Postives = 457/727 (62.86%), Query Frame = 1
Query: 76 TDTVKRVAIKKDGYFHILYQLNTTSTLSEVVKDICAKWTLNRPEQYALQYLDS-KLYITEENRAEIRDGDILTVTFNVELAAARFLSDIEQPDQAIKRKALDELAGITGPGQAEDSMFAKEFVQRNGITALVRIIES----VGEPNDVIAQSMAALQELLEHGFISWDQSVNPKFLDKVLAFANKPDGGDPRVIQKALSLLDNIVTVSKTLFVLVMNKVVIENIIHQLKSNDPQLQLSAVSLINSIMARMEHENRKKFSNGLVSKGYTEI-LQKVISTSAPLSSEMNHQLYIYQSXXXXXXXXXXNTKPDPHDTELNNDLMNIYNIAFDSAS-----------KERAMGRPDFKKLGFENGDLPLKDFEESPPGVLACEVMVYFASKHQDQYVKIILENSVRDEEYQCPFGRCTKQLTKMLAESLNVGAPISETSEEYQPMFFSSPHCFQELYSVTVQLLNKTWKEMRATAADFNRVISVVKDQIKRVLNEKPETIDKLKTKAFSLTYQQFLKLMQQEAQERNILDSQTKPVMELREQVEPEIRELVRQQRLAQLVEGEYFKQVDFRGKFKSDKYWYCCLSANHRFLHYATDLSGKDNTPPSIDALPHKLPLADVSKLELGKDSTHLK---AMKKN--FVNLTFSLFHGQEEQPLDFVAPNEQMLYVWVDGLSSLLGKEMISKAFQEDLDMLLNMEMKLRXXXXXXXXXXXXXXXXXXXXXNYDFFY 2190
+D VK VAI+ G L +++ L+ ++K++C W+L PE Y L+Y D +LYITE+ R++I++G IL + + AA + + + + + A+ ELA ++ D FA EF+ +GI L R++ES + ++++A ++ A EL++HG +SWD V+ F+ ++ + ++P D ++Q++L++L+++V S++L+ + ++ + +I L+ ++ ++Q A++LIN++ + + R+ +N K I L VI + P+ +EM HQLY+ Q L ++LE + TK DP+D + + + IAFD+ S K +AM D+K LGF N P DF ++PPG+LA + M+Y A HQD Y++I+LENS R+++++CPFGR +LTKML E L VG +E +Y PMFF+ F+EL+ + +QLLNKTWKEMRATA DFN+V+ VV++QI R L KP ++D+ K+K SL+Y + L+L Q E ++ D Q+ P++ELRE+++PEI EL++QQRL +L EG F+++ R + +++WYC L+ NH+ LHY DL + ++L K+P+AD+ + GKD H+K A+K+N + L FS+ + +E L+F+APN+ +W+DGLS+LLGK+M S+ + DLD LL+MEMKLRLLDLE++ IP+ PPP+P+EP +YDF Y
Sbjct: 5 SDIVK-VAIEWPGANAQLLEIDQKRPLASIIKEVCDGWSLPNPEYYTLRYADGPQLYITEQTRSDIKNGTILQLAISPSRAARQLMERTQSSNMETRLDAMKELAKLSA-----DVTFATEFINMDGIIVLTRLVESGTKLLSHYSEMLAFTLTAFLELMDHGIVSWDM-VSITFIKQIAGYVSQP-MVDVSILQRSLAILESMVLNSQSLYQKIAEEITVGQLISHLQVSNQEIQTYAIALINALFLKAPEDKRQDMANAFAQKHLRSIILNHVIRGNRPIKTEMAHQLYVLQVLTFNLLEERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNAPGSGTEKRKAMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKHECPFGRSAIELTKMLCEILQVGELPNEGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNKVMQVVREQITRALPSKPNSLDQFKSKLRSLSYSEILRLRQSERMSQD--DFQSPPIVELREKIQPEILELIKQQRLNRLCEGSSFRKIGNRR--RQERFWYCRLALNHKVLHYG-DLDDNPQGEVTFESLQEKIPVADIKAIVTGKDCPHMKEKSALKQNKEVLELAFSILYDPDET-LNFIAPNKYEYCIWIDGLSALLGKDMSSELTKSDLDTLLSMEMKLRLLDLENIQIPEAPPPIPKEPSSYDFVY 717 The following BLAST results are available for this feature:
BLAST of TCONS_00007471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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