TCONS_00007545 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007545
Unique Name	TCONS_00007545
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1810

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000078:62048..69918+
coding sequence from alignment at sc0000078:62048..69918+

transcript sequence

>TCONS_00007545 ID=TCONS_00007545|Name=TCONS_00007545|organism=Clytia hemisphaerica|type=transcript|length=1810bp
CATGATATCTCCTTGACGAGAAGTGACGTTGTTGCAGCGAACGAAGAAAT
TTTCCGTCACGATTTCCGTAATTGTTTTTGTACCCACATTGAATCGTTCT
GCCATCTTGTTTTTTGTCAATATCACGTGATTATCTTTGTGGGCTGCGCC
GTCGCTGTTGTTGGCGTAGTAGAAATCACCTCGCCTCTTCTAGTCACTGG
ACTTTTGATTGTCGTTGATAAGTagatttgattttcatttagaaaaaaac
acttgGCCAGTAAAGTAAAACATCATCAGTCATGGCAGATGAAGAACACT
ATGGATATTTTTATGGGGAGGAAGAAAAAGGTTTACTCGATCCCGCCTGG
GAAAGACAACAAAAAAAGACATTCACTGCTTGGTGTAACTCtcatttacg
aaaagtcaatgTACAAATAGAAGAAATTACGGAAGATTTCAGAGATGGAC
TCAAACTTATGTTGCTTCTTGAGGTTATCTCAGGAGACAGGCTTCCAAAG
CCCGAGAAGGGACGATTACGTTTCCATCTTGTTTCAAATGTTAATAAAGC
CCTGGACTTCATTGTTTCCAAAGGTGTAAAACTTGTTGGAGTTGGTGCTG
AAGAAATTGTTGATGGAAACCTTAAAATGACACTTGGTATGATCTGGACC
ATTATCTTACGATTTGCCATCCAAGATATTACAGTTGATGAGTTTTCTGC
AAAGGAGGGCTTGCTGTTATGGTGTCAAAGAAAAACAGCTCCATACAAGA
ATGTCAATGTTCAGAATTTCCATATGAGTTTCAAAGATGGTCTTGCCTTC
TGTGCACTTATTCATCGCCACAGACCAGAACTCATTGACTATGATAAATT
GTCTAAGGATGATCCTATGTACAATCTCAACTATGCTTTCGATGTTGCTG
AGAAACATTTGGATATCCCAAAAATGTTGGATGCAGAAGACATGGTTAAT
CAAGTCAAACCTGATGAACGTGCTGTCATGACCTACGTGTCTTGCTACTA
CCATGCCTTTTCAAGCTCTCAACAAGCTGAAACTGCAGCAAAGAGAATCT
TGAAAGCACTCAATGTCAACCAAGGTAATGAAAAAGCCATGGAAGATTac
gaaaacttggcctctgacCTTTTGGACTGGATCAACAAAAAGATTCCAGA
ATTTGAAGACAGAACCACGGACAATTCACTGGCTAATATGCAGgaaaaac
tCAACGACTTCAGAAACtacaaaggaaaagaaaaaccacCTAAAGTAGAT
GACAAGTCACGACTTGAAAACCTCTTCAACACTTTACAAACAAAACTTCG
ATTAAGTAACAGACCAGTGTACATGCCAGCTGAAGGCAAAATGATCTCTG
ATATTGATAAAGCCTGGAAAGATTTGGAACAAGCAGAGAAAGACTTCCAA
GATTGGATCCTCAGTCAACTTAGAAAACTCGAGAGATTGGATCATCTTGC
ACAGAAATTCAAGTTGAAATGTGATACACACGAAGCTTGGGCTCACGGCC
AAGACGATTATNCTAGACAAGATTAACCACGATGTGCAAGAGGCCATGAT
CTTCGAGAATCCACATACTCCATACTCTATGGAAGTGTTACGTATCCGAT
TCGAACAATTGTTGACCGGAATCACGAGAAACATCAACGAAGTCGAAAAC
CAGATCTTGATGAGAGATTCGATCGGCATCAGTGAAGAACAAATGAAAGA
ATTGAGGACATCCTTCAACCACTTCGACAAGAACAAGAACAACCAACTGG
ACTACAAAGAATTCAAACAATGTTTGGTCAGTTTGGGACACAGCATGGAA
ATCGAAGANG

Run BLAST on NCBI

protein sequence of alpha-actinin

>TCONS_00007545-protein ID=TCONS_00007545-protein|Name=alpha-actinin|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MADEEHYGYFYGEEEKGLLDPAWERQQKKTFTAWCNSHLRKVNVQIEEIT
EDFRDGLKLMLLLEVISGDRLPKPEKGRLRFHLVSNVNKALDFIVSKGVK
LVGVGAEEIVDGNLKMTLGMIWTIILRFAIQDITVDEFSAKEGLLLWCQR
KTAPYKNVNVQNFHMSFKDGLAFCALIHRHRPELIDYDKLSKDDPMYNLN
YAFDVAEKHLDIPKMLDAEDMVNQVKPDERAVMTYVSCYYHAFSSSQQAE
TAAKRILKALNVNQGNEKAMEDYENLASDLLDWINKKIPEFEDRTTDNSL
ANMQEKLNDFRNYKGKEKPPKVDDKSRLENLFNTLQTKLRLSNRPVYMPA
EGKMISDIDKAWKDLEQAEKDFQDWILSQLRKLERLDHLAQKFKLKCDTH
EAWAHGQDDYXRQD

Run BLAST on NCBI

transcript from alignment at sc0000078:62048..69918+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007545 ID=TCONS_00007545|Name=TCONS_00007545|organism=Clytia hemisphaerica|type=transcript|length=7871bp|location=Sequence derived from alignment at sc0000078:62048..69918+ (Clytia hemisphaerica)
CATGATATCTCCTTGACGAGAAGTGACGTTGTTGCAGCGAACGAAGAAAT
TTTCCGTCACGATTTCCGTAATTGTTTTTGTACCCACATTGAATCGTTCT
GCCATCTTGTTTTTTGTCAATATCACGTGATTATCTTTGTGGGCTGCGCC
GTCGCTGTTGTTGGCGTAGTAGAAATCACCTCGCCTCTTCTAGTCACTGG
ACTTTTGATTGTCGTTGATAAGTagatttgattttcatttagaaaaaaac
acttgGCCAGTAAAGTAAAACATCATCAGTCATGGCAGATGAAGAACACT
ATGGATATTTTTATGGGGAGGAAGAAAAAGGTTTACTCGATCCCGCCTGG
GAAAGACAACAAAAAAAGGTTAGCAAAGTTTTATCATCACATTCGTGTGC
TGATTTATATTTCACTCGAAGAAACACTGCTGTGTCTACTGTTTTCACAA
AAGCAAGTATGATGAACTTCACATATTAActtggaattttttcaaaaatt
aagcttgacattttttttttggtatcaAATGAAAGATCCATGTTTTCAAA
GACGACTTAGTATTTAGTCATTCTTGCGGTGATTTGAATTTGGAGAAAGA
TACACAAAGTACAGTAATATGGTTTGATATAGATGTTCCTCCTCTAATTT
CTCAACCTGTCTTTAGAGATAAAAAGTTAGGGATAATAAATGGGTTGGaa
tagctgattgaaactaTCCCGACCGTcctattattcctttctctagaGTT
AGGTTTCaggcagtcaggcacatcctggcaaatgaacaaggtgagcattt
gcatgaaatattcgtcacccagtgtaaatgagataggacgtctcaggcta
aaagcgtaaaaatgaataaaaatgaacttcaaactgaaaaagggaaaaaa
ggaagaaaaccgggaactttattttttcgttaaaagtttcttcaatcttc
gaagacaaaattgacccatggaaaaaaaatttcatctatgcagttctttg
aaatgaagcaaaatatttccaacccggttcaattttAAAACTGGGTAATC
GGctctattacgtcactttcgttttcaaccccgttcatttgccaatggtc
gcaagtgaaaaataccccgttcatttgccaggatgtgcctgactgtcagG
CTGTAGGAAGAGGTTAGATAAACTTATGGTAATGACTTGAAGCTTTGTAA
CATTTGAATTCTGTGTTGCCTTGCAGAATTCAACAGcactatttttaaaa
ataaaaaagacagAAATCTCAAGAACAAAGGAATCAAAGGCTCAAGTTGA
aatgattattttcaaatttaaaattggTTAATCAATTATAGCTTCCCACT
TGTCATgtttttgcttagaaaaatctttttttaaagcaaatttaTTAGCA
GACTGTATCGTTTGAGACGCAAGATCAATAGCCCAAGAAGCACTAAAAAT
TCACCATGATTATAACATGATTTGGAAGGAATAATAAATTGCACTtacta
aaagaaaaatttctaattaagctgataaaaacaaaacagcaaaattttaa
aacaaatgtaACAGTGCAAGAAATACGCAGTTTTGCTttcagctctactc
taccattttagaatctcaAAATCTAGAATGAcgagccaggtcattcattt
gagggctatgcatgttagcctccactgatgcaagctaCCCGATTTTACGG
TAGTGATGAAAGTTACCCCTATATATAAGTTCAGTAAAAGTACCCTTCAA
TTAATATCACTTACATTTTAATCAGGTGACTATTTATCTTAAGATAAAAG
AAAGATTCCATACCTCGttgaaagaaattttactaaaaatgTAGAATATC
TTAGACAGTTCTTTCTCTTTGTTAAATTTTGGTTATCAATATTCTGATGT
GTTAATTTATATTTTAGACATTCACTGCTTGGTGTAACTCtcatttacga
aaagtcaatgTACAAATAGAAGAAATTACGGAAGATTTCAGAGATGGACT
CAAACTTATGTTGCTTCTTGAGGTTATCTCAGGAGACAGGCTTCCAAAGC
CCGAGAAGGGACGATTACGTTTCCATCTTGTTTCAAATGTTAATAAAGCC
CTGGACTTCATTGTTTCCAAAGGTGTAAAACTTGTTGGAGTTGGTGCTGA
AGGTAATGCTATCTTTGAAAAACCTAACTTTCCATATGCTGAAAGACTGC
ATTGGTTTTGATGAATTAAAGGCAGGACAGTGACCAGTGGTGGCACTTTT
TCTCATGTGTTTTTAAGTGGGAAATTCTGCTGTACCCACACATATATAGC
TAATTAAATTAAATCGACAGGTACATACATTTTCTTTTATAGGCATAACA
CTTAAGCacatgaaggctcagattttcAGATTTCTTAAGCATAACTTAAA
CATGTGAAGTCAGccttaaatatttttcaagtcagTTTGAAGTTGTCAAT
CTTTTGTCTGTTTTTATTTACCAAGAATAAtgatttcaggaggggcagct
TCTGATAACCAGACACTAAAacggcatgaaaaatggcctaaACTTCATTT
ATGTGTCAATTTAACATAACTTCTTTAAATCTTTTCAGAAATTGTTGATG
GAAACCTTAAAATGACACTTGGTATGATCTGGACCATTATCTTACGATTT
GCCATCCAAGATATTACAGTTGATGGTAAGGAAATActtaaatttccaaa
atttagaaaattgtcaaattattttgaattttagtcaTAATGTAAGAATA
TTATAAAATGATGTATTGGCACCAGACTTTCAtattatattttctttcat
GATTATAGAGTTTTCTGCAAAGGAGGGCTTGCTGTTATGGTGTCAAAGAA
AAACAGCTCCATACAAGAATGTCAATGTTCAGAATTTCCATATGAGGTAA
AAACaatctacatttttttgttctcttctttttgatatgtttaatcTGGT
CTATATAAAAGATAAATAAGAAATATGTTTGTTGAGACACTTGTGTGTTA
ACAGTGAGTAATAGACATAAACATTTTCAGGGACTAGTTCACTTAAAACT
GTtttctaatttgttttttttctccttaATCTCTCTGACACTAATATTCT
ACTTACAAAGAAAGAGTGGTTAAAGAAAATGATCTTCCAATTTGAATTAT
AAACAGGAAATATTTGATAGGATACAAAGGCTTGTCCTTCCTAAATTGGC
ATCCCTACAGGAAATGGACAGCTTTGATGATGAATATGTTTATTCCTGAT
AGAATTACTTTCAGTTCTCGTTTCTTTTATCTTTAGTTTCAAAGATGGTC
TTGCCTTCTGTGCACTTATTCATCGCCACAGACCAGAACTCATTGACTAT
GATAAATTGTCTAAGGTAAATTTGGTTTTTCTGTTGATTAAAAAGATCCA
TcttaaaattgatattttttcagaaaagaatTCAACTTTTCCTTGTCATG
GTTTGcattttatgtttttcttcaaattaattcAAGGAAATTTAAACTTT
GGCTTTTATCAGCGCATGTATCTTAATGTCGAAAAGAGAAAACGGCTGAT
TgatcaataaaaataaatttagatGATGTCAATAGAAATAAATAATTGCC
CTCAATTATACAGCAATTTGAATGAGCTTTTTCCTTACTAAGCTTTTTTA
TAGTGATTTCTTCCACTTAAGAAAAGATCAATTCAACCCTGAGGTGGTGT
CTGTTACTATAAATTATTGAAAGACTATGGCTATATTCGATGCAAACCTA
GTGTCAGTAAAATCATAAACATAGCAATTGACTTATGATGGAGCCATTCT
GTCAACAATGAAAAGTGTCACAAAAGGGAAAACTGAATTCTATACTAAGG
TCCCTTATTCATGAAAGAAGTGAATATTGCAACATCAACTTGATAAATAT
TTCATAAGTATATCAAATTACACATCAGGCCTCCAAAAACAAAATACTGA
AATCAGAtactaaaataataaaaaagaattgGTATTTTCACCTCTTGTGA
TCAATCTAGAATAGAAACCCTAAACCAAAACAAATGCTTATCTTATtgat
cacaaaaaaaattccttttaatCATTCCAaaacgaactttttttctacaA
TTGAACTTTTTCTGTTAAGCAGTGTTAAGAACTATAGCTCTTTAGATTGT
TCTATAACTTATCTCTCCCACTTAGGCTGACAATCAAAAGCTGCTATTAA
CTAAAACAAGCCAAATTTAGTTCTATGGACCCACTTTTACACCTTTTAac
aagaattttcaagattttttatcaattttaaaaatttgacattgtaTCCA
AGGCAAATTATCTTTCAACCCTCTAAAGTACCGGGTTCTCAGTATCTGAT
CAAggtataaaaacatttttggaatAGCATCAGTAAAGTGTCAGTAAAAC
CTATTAGAATAAAGTAAATTAAACAGAACAAAACTATTTGATTTACTATT
GAATTTCAGGATGATCCTATGTACAATCTCAACTATGCTTTCGATGTTGC
TGAGAAACATTTGGATATCCCAAAAATGTTGGATGCAGAAGGTATAAATT
ATCAAATCATGTTAATACTGACACTTTGACAAACCACAATATCCTACTGG
gtgtaaagtaaaaaaaattatctttttcagttaaattttcTCTAGTTCTA
ATTAATTTAAAAGAACCAACGGTTTCAGTTGACAAGAAAAGagataactt
aaattttgatagttTGTTTCattacatcaaaagttatgctcattTGAATA
AAATAGTTACTTTCAGAAACTGCTCAAACAcattgaaaatcgacctatca
taTTAAACAGAAGAATTATTGCATGATgatcagtatttttgtttaagtca
ttaaaaatgataattcgGTGTCAAAGTGACCTGACTGAAGATTTCATTAA
ACCCTTCCAAAACTTGCtaattctcaaaatttatgtgtctattattatta
aaaaagcTTGTAATAGGTCAGTTTTCAGCATTGTTGAGCATGTTCTAAAA
GTAAGACTTTTTCCATTGAGCCATattgattaattttttcttgtaccaat
caaataatttttacaacactagtgtagtaactgcttttTGACAAAGTTTT
TGACCCTGCCATCATATTATGTTTCTGCAACCATTTAACTGCTCTCAGTT
TTGAAGATCAATGCACTAAATAACTATCATGCCAATGCAAAGTTCTAAAG
TCATATTATTTGTTTTCTTCTAGACATGGTTAATCAAGTCAAACCTGATG
AACGTGCTGTCATGACCTACGTGTCTTGCTACTACCATGCCTTTTCAAGC
TCTCAACAAGTAAGTCAACAGTTATTAAAGATTTTTGCACTCTATATCAC
TAGaccaaactaattttctttACCTTCGTTTCTCTTTGAACATGCATATA
ATTTGTCTCTATTAGCTGCAAAAAGGACTccataattttatgtttttttc
tccAAATATTAGGCTGAAACTGCAGCAAAGAGAATCTTGAAAGCACTCAA
TGTCAACCAAGGTAATGAAAAAGCCATGGAAGATTacgaaaacttggcct
ctgacCTTTTGGACTGGATCAACAAAAAGATTCCAGAATTTGAAGACAGA
ACCACGGACAATTCACTGGCTAATATGCAGGTAAATATCAACCAACAATA
TAGTCTGATATACAGCTTTTACTATGTCATTTATTCTAAGGAATAATCGT
TAAAACATAAACTCACAAAAAAGTGACATACAATATAATTCATTTCTTCT
GAAAGTTAAAGTATTGTTTTAGACAAGGATCTCCTCAGTGCTAGATTTTT
AAATGCTATTcttcttttttaggaaaaactCAACGACTTCAGAAACtaca
aaggaaaagaaaaaccacCTAAAGTAGATGACAAGTCACGACTTGAAAAC
CTCTTCAACACTTTACAAACAAAACTTCGATTAAGTAACAGACCAGTGTA
CATGCCAGCTGAAGGCAAAATGATCTCTGTAAGTCCCTTGATGTGCtctt
tatattttcttcatttaaatAGCTTATGAATGTGTTAAAGAAGTGCTAAA
TTTTCTCCTCAgggttttaaaagttttaatacTTTATAATAAGCACCTTT
AGAATACGATTAATGTCATAATTGTGAAAAAGGTTTCACGTGTGGTGCTC
GAACTCTTATCagtaaaagttatatttcactTGCTTTTGAACTGAACATT
TTGATGTTACTCTTTGAAAGGCTCTATCATGACTATTCCTGAACCTTCTT
CTGCTCTTCAGGATATTGATAAAGCCTGGAAAGATTTGGAACAAGCAGAG
AAAGACTTCCAAGATTGGATCCTCAGTCAACTTAGAAAGTAAGTCATTAA
AGCcctatttcttttgttttcctttcaaTGTTCAACAAATTTCTACCGTC
TCGGGGGTGATGTCAAAAATGACCAATACGGAACGGAAAGGAatgatttt
gatcaaatttgatGTACAAACGACTTTGATATTTGGATGAAGATATAACT
TTCAAACGCTGATCTTTTaattaatatttaatttttcccACTAGACTCGA
GAGATTGGATCATCTTGCACAGAAATTCAAGTTGAAATGTGATACACACG
AAGCTTGGGCTCACGGCCAAGACGATTATNCTAGACAAGATTAACCACGT
AAGAAGATCGCCTTTTATCTCTGATACATACCTCTTTCGCTTGATACGGG
GGTGTAATGTACCCTACTAGATTTTTCTTGattcttattttgatgcgaaA
TGAATAGCACTTCGTCGTGCaaacgtcatgattattattcctctcatttg
accgaaattcaatcccacaatccttttactcttaattcaaaagtcgtgaa
agttattacttgttctttgtaattgagtgtaatttgcgtgcaagcgtaat
aaacgcaaagggtgatgggatNGGCTCAACGAAAACGACACGAAGCTTTC
GAATCAGATTTAGCCGCACAACAAGACCGTGTTGAACAAATTGTCGCTAT
TGCACAAGAATTAAACACTTTAGGATATAGTAAAGTTGATGAAATCAACG
CCCGTTGCAAAAAGGTTTGCGATGGTTGGGATAACCTTGGTGACCTTACA
ACGCAGAGAAGTCAAAACCTTGCAGCTGCTATTGAAATCGCCGAACGATT
AGATAACTTATGGTTAGAATACGCCAAGAAAGCATCGCCATTCAGTAACT
GGATGGNTGTAATAAATCAGAATAAATACTTTATACTACAAGACTTTCTT
CAACATATATATAATGTATAATTTTGTCTAGAGTTGATCTTTAAAACTGa
ttgaaataaatttcatttaaatgTTTGTTCAGGATGTGCAAGAGGCCATG
ATCTTCGAGAATCCACATACTCCATACTCTATGGAAGTGTTACGTATCCG
ATTCGAACAATTGTTGACCGGAATCACGAGAAACATCAACGAAGTCGAAA
ACCAGGTAAATAACACATCactagaaaaatcaaattttttaactAAAGCA
CTTTAGCACTTTTTACTATAGGCTTATCTTTAAAGGGCAGCTCTTTGCTA
TTCTTAAGTTATCTAATTTATCTTATTTGCCTGTTTGTCTTAAATGTATT
TAATAAGACTTCCCCTTAAAGACAACAGATTGCCTGtttattgaattgtt
tttaaaacCGGCTCAACTTGTgcagaatttttttatgactgaAATTCTAT
GTTTCACATTACAGATCTTGATGAGAGATTCGATCGGCATCAGTGAAGAA
CAAATGAAAGAATTGAGGACATCCTTCAACCACTTCGACAAGAACAAGAA
CAACCAACTGGACTACAAAGAATTCAAACAATGTTTGGTCAGTTTGGGAC
ACAGCATGGAAATCGAAGANG

Coding sequence (CDS) from alignment at sc0000078:62048..69918+

>TCONS_00007545 ID=TCONS_00007545|Name=TCONS_00007545|organism=Clytia hemisphaerica|type=CDS|length=1245bp|location=Sequence derived from alignment at sc0000078:62048..69918+ (Clytia hemisphaerica)
ATGGCAGATGAAGAACACTATGGATATTTTTATGGGGAGGAAGAAAAAGG
TTTACTCGATCCCGCCTGGGAAAGACAACAAAAAAAGACATTCACTGCTT
GGTGTAACTCtcatttacgaaaagtcaatgTACAAATAGAAGAAATTACG
GAAGATTTCAGAGATGGACTCAAACTTATGTTGCTTCTTGAGGTTATCTC
AGGAGACAGGCTTCCAAAGCCCGAGAAGGGACGATTACGTTTCCATCTTG
TTTCAAATGTTAATAAAGCCCTGGACTTCATTGTTTCCAAAGGTGTAAAA
CTTGTTGGAGTTGGTGCTGAAGAAATTGTTGATGGAAACCTTAAAATGAC
ACTTGGTATGATCTGGACCATTATCTTACGATTTGCCATCCAAGATATTA
CAGTTGATGAGTTTTCTGCAAAGGAGGGCTTGCTGTTATGGTGTCAAAGA
AAAACAGCTCCATACAAGAATGTCAATGTTCAGAATTTCCATATGAGTTT
CAAAGATGGTCTTGCCTTCTGTGCACTTATTCATCGCCACAGACCAGAAC
TCATTGACTATGATAAATTGTCTAAGGATGATCCTATGTACAATCTCAAC
TATGCTTTCGATGTTGCTGAGAAACATTTGGATATCCCAAAAATGTTGGA
TGCAGAAGACATGGTTAATCAAGTCAAACCTGATGAACGTGCTGTCATGA
CCTACGTGTCTTGCTACTACCATGCCTTTTCAAGCTCTCAACAAGCTGAA
ACTGCAGCAAAGAGAATCTTGAAAGCACTCAATGTCAACCAAGGTAATGA
AAAAGCCATGGAAGATTacgaaaacttggcctctgacCTTTTGGACTGGA
TCAACAAAAAGATTCCAGAATTTGAAGACAGAACCACGGACAATTCACTG
GCTAATATGCAGgaaaaactCAACGACTTCAGAAACtacaaaggaaaaga
aaaaccacCTAAAGTAGATGACAAGTCACGACTTGAAAACCTCTTCAACA
CTTTACAAACAAAACTTCGATTAAGTAACAGACCAGTGTACATGCCAGCT
GAAGGCAAAATGATCTCTGATATTGATAAAGCCTGGAAAGATTTGGAACA
AGCAGAGAAAGACTTCCAAGATTGGATCCTCAGTCAACTTAGAAAACTCG
AGAGATTGGATCATCTTGCACAGAAATTCAAGTTGAAATGTGATACACAC
GAAGCTTGGGCTCACGGCCAAGACGATTATNCTAGACAAGATTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004266	XLOC_004266	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
alpha-actinin	TCONS_00007545-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000078	supercontig	sc0000078:62048..69918 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
566.115	542.068	532.518	455.323	174.61	132.69	276.38	307.74	213.159	284.248	205.155	153.648	474.673	404.136	323.497	396.814	346.911	382.734	418.03	479.047	191.628	210.714	354.44	347.162	184.53	198.769	456.632	443.649	584.194	652.336

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001715	CH-domain
IPR002017	Spectrin_repeat
IPR001589	Actinin_actin-bd_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00007545 vs. Swiss-Prot (Human)
Match: ACTN2 (Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 PE=1 SV=1)

HSP 1 Score: 616.305 bits (1588), Expect = 0.000e+0
Identity = 278/391 (71.10%), Postives = 341/391 (87.21%), Query Frame = 3

Query:  333 LLDPAWERQQKKTFTAWCNSHLRKVNVQIEEITEDFRDGLKLMLLLEVISGDRLPKPEKGRLRFHLVSNVNKALDFIVSKGVKLVGVGAEEIVDGNLKMTLGMIWTIILRFAIQDITVDEFSAKEGLLLWCQRKTAPYKNVNVQNFHMSFKDGLAFCALIHRHRPELIDYDKLSKDDPMYNLNYAFDVAEKHLDIPKMLDAEDMVNQVKPDERAVMTYVSCYYHAFSSSQQAETAAKRILKALNVNQGNEKAMEDYENLASDLLDWINKKIPEFEDRTTDNSLANMQEKLNDFRNYKGKEKPPKVDDKSRLENLFNTLQTKLRLSNRPVYMPAEGKMISDIDKAWKDLEQAEKDFQDWILSQLRKLERLDHLAQKFKLKCDTHEAWAHGQD 1505
            LLDPAWE+QQ+KTFTAWCNSHLRK   QIE I EDFR+GLKLMLLLEVISG+RLPKP++G++RFH ++NVNKALD+I SKGVKLV +GAEEIVDGN+KMTLGMIWTIILRFAIQDI+V+E SAKEGLLLWCQRKTAPY+NVN+QNFH S+KDGL  CALIHRHRP+LIDY KL+KDDP+ N+N A ++AEKHLDIPKMLDAED+VN  KPDERA+MTYVSC+YHAF+ ++QAETAA RI K L VNQ NE+ ME+YE LAS+LL+WI + IP  E+RT + ++  MQ+KL DFR+Y+ K KPPKV +K +LE  FNTLQTKLR+SNRP +MP+EGKM+SDI  AW+ LEQAEK +++W+L+++R+LERL+HLA+KF+ K  THE WA+G++
Sbjct:   31 LLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHRPDLIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKE 421

HSP 2 Score: 114.775 bits (286), Expect = 2.055e-26
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 1

Query: 1513 LDKINHD---VQEAMIFENPHTPYSMEVLRIRFEQLLTGITRNINEVENQILMRDSIGISEEQMKELRTSFNHFDKNKNNQLDYKEFKQCLVSLGHSM 1797
            +DK+  D   +QEA++F+N HT Y+ME +R+ +E LLT I R INEVE QIL RD+ GI++EQM E R SFNHFD+ KN  +D+++F+ CL+S+G+ +
Sbjct:  692 IDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDL 789

The following BLAST results are available for this feature:

BLAST of TCONS_00007545 vs. Swiss-Prot (Human)

BLAST of TCONS_00007545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACTN2	2.055e-26	71.10	Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 PE=1 SV=1	[more]

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TCONS_00007545 (transcript) - C. hemisphaerica