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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007547 ID=TCONS_00007547|Name=TCONS_00007547|organism=Clytia hemisphaerica|type=transcript|length=1483bp
NGTCGAAGGGACGAATGACGTCCataaatttcttcaattttcaggtaCCT
TTCAGATTTTCTTACATTAATCTAACTTTTATGGAATACATCAGGACCTG
GAAAGTTATTCAATGATGAGTCTACCTAGATATGCTATTATTTTGAATCA
AAATGCCAATGAGGAGGACGGTGGTGGAGCAGGACTAGCAAATAGTGCAA
ATTCTGTTGCTGCTGGTAGCAGCAGGAAGACAAATGTTGATGATGTTACT
TTCTTTCAAGCTCTGTCACAACTTGATGCACGTGACCCCACTATTTTACA
AGAGTTCATGGACGTTTACAGATATGTAAAAGTGAAAATCTCTGGAATTA
GTGATTGCATAAGTTTCCATGAAAAAACTGAGGATTCTCCAGATTTTGAG
GAATTTTCCGTTGATTTATGGAAAGAATTTTATATTCAAGAGGGTATCAT
ACAAATTGGTGTTTTAGAAGATAAAGAACCAACTGAGGGTCTTTTTGTTG
GTGCCAACTCAGGAAGGGTTTACATTTGTGGGCAAGCAGATGATTTTTCA
CAACAAAAATGCGTTTGTGTTGCACCTAGCCTTTATCAGTTGATCTGGAA
AGGTCCTGAGCAACCTGTTCAATACAAACCAGCTTGTATGTCCAATGGAT
GCTATGGGTGCTTTGATCCTGTCATGAGACATCGCTTGTTTAGATTCAAA
CAATTTTAAACTCTTTATCAACTCTTTACTAGAGTTACTAAGATTTGAGC
GCaattttttgatcaatttttgatTCAACAGATTGGGTTTTTAAGTTTTA
GCATTGTTTGGTGagttatcataccatcataaaCTGATTTTTAGAGATTA
TTTATTAATTATATAAATTCTTTTTGGAATTTCATCCTATAATTTTAAAA
TCCCATTACCAATTTATgtgttttgttaaaattttgtcAGTTCTTTTGca
ttcatttttacattttcatatgtaatttttcattttggcaATCTGAAAAC
ATTTGTATATTTAAAGGTTGTACAATAATTTATCTTGTGAAGTAATTTAA
TTTAACAATGGAGAAAAAGAATTACCTTAAATTTTCTGCCTCAATTGCTG
CAGCTTCATTGAGGCTTTTTCGTGAATGCTacacaatcatggtcgaaata
aatttagattttttgttttaaggtttttcagaatttagagCTCTgacgag
aattgctattttagtacttccactttctttcattggatatttcgatttta
gaggtgTTCAATAGCTTCTAGgttatattccaagccttattggaacaatt
ctgatatttttaatccagagatcctaaggtcgtaagtcgAGTCTCTCATG
TTAaagctcagagttaaaactctactttccaactgtagtttatacacact
taaaaattatttatggtgttcacaattttttttaatattttgtccatgat
tgtaggttTTTATGGGGAAATACAGGTTATGTG Run BLAST on NCBI protein sequence of TCONS_00007547-protein >TCONS_00007547-protein ID=TCONS_00007547-protein|Name=TCONS_00007547-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MMSLPRYAIILNQNANEEDGGGAGLANSANSVAAGSSRKTNVDDVTFFQA
LSQLDARDPTILQEFMDVYRYVKVKISGISDCISFHEKTEDSPDFEEFSV
DLWKEFYIQEGIIQIGVLEDKEPTEGLFVGANSGRVYICGQADDFSQQKC
VCVAPSLYQLIWKGPEQPVQYKPACMSNGCYGCFDPVMRHRLFRFKQF Run BLAST on NCBI transcript from alignment at sc0000078:74630..80908+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007547 ID=TCONS_00007547|Name=TCONS_00007547|organism=Clytia hemisphaerica|type=transcript|length=6279bp|location=Sequence derived from alignment at sc0000078:74630..80908+ (Clytia hemisphaerica)
NGTCGAAGGGACGAATGACGTCCataaatttcttcaattttcaggtaCCT
TTCAGATTTTCTTACATTAATCTAACTTTTATGGAATACATCAGGACCTG
GAAAGTTATTCAATGATGAGTCTACCTAGATATGCTATTATTTTGAATCA
AAATGCCAATGAGGAGGACGGTGGTGGAGCAGGACTAGCAAATAGTGCAA
ATTCTGTTGCTGCTGGTAGCAGCAGGAAGACAAATGTTGATGATGTTACT
TTCTTTCAAGCTCTGTCACAACTTGATGCACGTGACCCCACTATTTTACA
AGAGTTCATGGACGTTTACAGATATGTAAAAGTGAAAATCTCTGGAATTA
GTGATTGCATAAGTTTCCATGAAAAAACTGAGGATTCTCCAGATTTTGAG
GAATTTTCCGTTGATTTATGGAAAGAATTTTATATTCAAGAGGGTATCAT
ACAAATTGGTGTTTTAGAAGATAAAGAACCAACTGAGGTATTTgttatat
atgtgaagaaattcaaagaatttctgtccaactatcttctttcaggagat
ttgggtggcagagcagcatatgcatttcgtccttattaggactcgtcagc
actgcatactgcaccctggctaggcagatcgaatagaccttttttcaaag
aggacgtcctattgaataattatgtagtccagccataaaaacaatgatag
agccatgcataattactgtttcatgcatattgtaataattatgcatggtt
ttatcattgtttttctgcttgactacataattattcaacagggtggcctc
tttgaaaaaaggtctattgcctagcatctcacgccataaaactaaaggac
cctgccaacgcaccggactgtccggtgtatttgtccggtggcaaaagtat
cctttcgctacaccggacacaataagtccggtgtcagtccggtgttgtat
acagggaattttggacgccggacatttacgaaacaaaaaattaagaaaca
ccagacgcaccggactggtcatgtccggtgttttgattgccCGGTGGGAA
AAagtatccttctccgacaccggacatccgatttccttaagtccggtgta
gaaattgtccggtggtaaaaaaaattctcattttacaccggactttcgcg
tgtccggtgttcgttaagtccggtgcgtcggcagggtcctaaaACTAATT
GTGGCGCAGACTGAAAGAAGTATATTATGAAAAagtatagtatgaaaata
aaatgttttttcctgtCAGACCTACAGACAACAAAGAGTGGccaaattct
ttttcctcttagagagacgatgttacaataatgaaagggtaattagtcct
ctctgggtccctctgtctttatcctggcttgggacaggctgactgtcatt
taagacagccaggcgacattaccccagcggcctgtacaagatgacaacaa
actccaggtagactgacaggagaagaaaacaaaaaatgtatatatatata
tcaagTGGATGGGGCTGGGGGAAGGGGGAGTCTATGGGGGTTCAGTTCAG
TTACAGCAGTTACTGTAGTAggagggttagggttggagcttgaGAGTCGC
AATATAAGGCTGaagaaggccttcttaggggcccTATACCCTGAGAGTTA
ATCCTAGATGAATAGATTATATATTTATCCTTCTTATCCTAAATATATGT
ACAAACTACAAGTTGAGGTGGAATATGAACACGACCCTGCTGGCGCACCG
GACAGTCCAACAAAATTGACAAACATAAAAGACCTGGatgtttttaagaa
agaaatggaTAAAATATCAATTAGCGATTTTTAATCctattaaaatattc
aaaattttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAAATTTAGGCtacattcttaatattt
ttcattttattaatcatattttttgttacattggcGAGAATAACTTTGTA
TAAAGTTTTTGCTAATCAAATAATAGAAGTCCAGTGTGTCTGTCCGGTAC
CAGAAAAGTATCCCTCAGCCTCACTGCACCCACCGGACAGTCCAGTGTGT
TTGTCCGGTGCCAAAAAAATATCCCTCAGCCCAAAAGTATCCCTCTGGTG
TTAATTTTTCCACAAACTTCTTGACACTAGACAAAGTTTGTTACTTATGG
TTACTTTTGGTTGTCTTCGAGCATATAGCTCTGGCAAGAACCTTTTGATC
CACACCACAATCTTCGTTAAATCCACATTTTGGGGTTCATTGGGAATTGT
TTTGAGGTGCTTATCCAGTGCAGTTTTGAATTTAGGTGAATTGCAGAAAA
ATCATACAATGTCCCGTCCGCAACAAAAGCACCCTTTATGCTTACAAGTC
AAGATCTGGGAACTAGagcagttaggaacatttggcgagtttctgtacgc
ggccgcaatcaaaaaaatcataaccacactcataaaaaaattaagtttgc
gtctttttttactgttttttgcctagacgatatagcaaacatagtaagta
taagcatcGTTTTTCCTTTATAATTGGATGTAAAAAATTTTTGCGTCGGT
AGAAATTTCTCCAACTTgcaacaatgatagaacacacctatttgaaaaaa
attaaccagcgcattttttatctttctacttcttcatcttcaatgaagct
ctcaaagtcaaatagaattaagcacataagatattcttataattgagAAA
TGTCATTCGCGCTTTCGCTACGATGGAGTGCATggcgtaactcgcgcggc
aacaaaCTGGACTTCTGTTGgctgatcatattgggcgttttggcgttacc
accctcgaaccAACCGGCGCCTTCATCATTccgcaactctgtccaccatt
ttaaatgagttaacaatagatccaaaagggcgccctcatcaagaaagatc
atttgcttcggtctccggctttgggaagtagtaatgttttcgattgtttt
cgatggaaaatggtaagaaacttaagtttacaagtgtcatttatttttgc
tagctgatagaatggcaggatcctggatggtttccctaactgtagAGAAC
ccctttttttgttgttgtgacATACTAAATGGTTTCTTCAGTTAAAGACG
TTTATTATTCAAGTAAtctattctgaattttttaactGGTAAAAACTAAA
ACGGTTCAAAAATTTGTCCCATCCGCAACAACACAAAAgtcttaagagcc
attttttaaaaaaatcttcagaatataGAAAGTCTGATACCTGATCCTCT
Tagattttgaggaaattttgaccaaatgatctatcacacaagaaaataag
accctgaaacTCAAGTAGTTTTGCAGATATAGTGTCtcagataggctact
aagcgaaaattgacccctaaaaatcatgaactctggtggggagcagattt
tgaaagccaatgaacagtctaaagctaatcacaactcttggacttagaaa
ttttgctgtaaagcgcaaattattgatcctaaggcttaggtttttCCTCA
TCTTAAATTCACTGaagaaagcaggaatttgatgcgagagttagattgtc
aacaaagtgccgtaaaaaatcattgaataaaagatagaagaacttaaaat
cttaaatatttttattttgaagaataggtgcaaaaaagtgaaacatagaa
aagtttcattttttattgcattATTCGAAAttggggatttggaaaatttt
ctatgtttagttttttgcacaaacccctgtaactatgggcaagcaccccg
ttgctaagatgttggcttgaaatcgaaaatgaaatcactcaaaacaaaag
taaaatcggcctgtaatcttgatataccaGTTTAAGTCTACACTGACTGA
ACAGCTTTGCACCCTGTTTTGCTAAGGTGCTGTCATGTAATTTCAAATTA
GCAGATCTCAATTTAGGAGGCTGAAGTTTGctatttgaaagaaattataa
aaactaataaatattttcatagaGAGCAAGCCCAATAGCTTGTATCCTAA
ATTTAATCAAAAGGTAAAGGTGCGCCTTACAGTTAATGCGACTCTCAAAC
TCCATCCCTGACCCTTACTGGTAATAAACTAATATCCTCTATAGCTCAAA
ATGACAGGTaaggaaaaaatagaaaaacttcatttttagaGGTTCTGTTT
TTTACATTTAATTTTCAGTCTGTTGGATGTAAAGACAAAAAGGGTATGGC
TGAGATAAAAAAATCTGACTATCATGTGACCCTAGAATGGCTAGATCATA
GCTTGCTTATTTGAATTCGATACGTTTGCCATATTAAGTTGTTGAAAAAA
GATTACAACATTTGTTTTATAAATNCGATACGTTTGCCATATTAAGTTGA
TGAAAAAAGATTACAACATTTGTTTTATCAATTCAAGATGATGGCAAAAt
atcgaaaagcttttgcttgAATTTTTAAAACAGATGTTGTTATCTCTTTT
CATCAACTTGCTTATGTCTTCAATTTATTTTAGGGTCTTTTTGTTGGTGC
CAACTCAGGAAGGGTTTACATTTGTGGGCAAGCAGATGATTTTTCACAAC
AAAAATGCGTTTGTGTTGCACCTAGCCTTTATCAGTTGATCTGGAAAGGT
CCTGAGCAACCTGTTCAATACAAACCAGCTTGTATGTCCAATGGATGCTA
TGGGTGCTTTGATCCTGTCATGAGACATCGCTTGTTTAGATTCAAACAAT
TTTAAACTCTTTATCAACTCTTTACTAGAGTTACTAAGATTTGAGCGCaa
ttttttgatcaatttttgatTCAACAGATTGGGTTTTTAAGTTTTAGCAT
TGTTTGGTGagttatcataccatcataaaCTGATTTTTAGAGATTATTTA
TTAATTATATAAATTCTTTTTGGAATTTCATCCTATAATTTTAAAATCCC
ATTACCAATTTATgtgttttgttaaaattttgtcAGTTCTTTTGcattca
tttttacattttcatatgtaatttttcattttggcaATCTGAAAACATTT
GTATATTTAAAGGTTGTACAATAATTTATCTTGTGAAGTAATTTAATTTA
ACAATGGAGAAAAAGAATTACCTTAAATTTTCTGCCTCAATTGCTGCAGC
TTCATTGAGGCTTTTTCGTGAATGCTacacaatcatggtcgaaataaatt
tagattttttgttttaaggtttttcagaatttagagCTCTgacgagaatt
gctattttagtacttccactttctttcattggatatttcgattttagagg
tgTTCAATAGCTTCTAGgttatattccaagccttattggaacaattctga
tatttttaatccagagatcctaaggtcgtaagtcgAGTCTCTCATGTTAa
agctcagagttaaaactctactttccaactgtagtttatacacacttaaa
aattatttatggtgttcacaattttttttaatattttgtccatgattgta
ggttTTTATGGGGAAATACAGGTTATGTG Coding sequence (CDS) from alignment at sc0000078:74630..80908+ >TCONS_00007547 ID=TCONS_00007547|Name=TCONS_00007547|organism=Clytia hemisphaerica|type=CDS|length=1194bp|location=Sequence derived from alignment at sc0000078:74630..80908+ (Clytia hemisphaerica)
ATGATGAGTCTACCTAGATATGCTATTATTTTGAATCAAAATGCCAATGA
GGAGGACGGTGGTGGAGCAGGACTAGCAAATAGTGCAAATTCTGTTGCTG
CTGGTAGCAGCAGGAAGACAAATGTTGATGATGTTACTTTCTTTCAAGCT
CTGTCACAACTTGATGCACGTGACCCCACTATTTTACAAGAGTTCATGGA
CGTTTACAGATATGTAAAAGTGAAAATCTCTGGAATTAGTGATTGCATAA
GTTTCCATGAAAAAACTGAGGATTCTCCAGATTTTGAGGAATTTTCCGTT
GATTTATGGAAAGAATTTTATATTCAAGAGGGTATCATACAAATTGGTGT
TTTAGAAGATAAAGAACCAACTGAGGGTCTTTTTGTTGGTGCCAACTCAG
GAAGGGTTTACATTTGTGGGCAAGCAGATGATTTTTCACAACAAAAATGC
GTTTGTGTTGCACCTAGCCTTTATCAGTTGATCTGGAAAGGTCCTGAGCA
ACCTGTTCAATACAAACCAGCTTGTATGTCCAATGGATGCTATGGGTGCT
TTGATCCTGTCATGAGACATCGCTTGTTTAGATTCAAACAATTTTAAATG
ATGAGTCTACCTAGATATGCTATTATTTTGAATCAAAATGCCAATGAGGA
GGACGGTGGTGGAGCAGGACTAGCAAATAGTGCAAATTCTGTTGCTGCTG
GTAGCAGCAGGAAGACAAATGTTGATGATGTTACTTTCTTTCAAGCTCTG
TCACAACTTGATGCACGTGACCCCACTATTTTACAAGAGTTCATGGACGT
TTACAGATATGTAAAAGTGAAAATCTCTGGAATTAGTGATTGCATAAGTT
TCCATGAAAAAACTGAGGATTCTCCAGATTTTGAGGAATTTTCCGTTGAT
TTATGGAAAGAATTTTATATTCAAGAGGGTATCATACAAATTGGTGTTTT
AGAAGATAAAGAACCAACTGAGGGTCTTTTTGTTGGTGCCAACTCAGGAA
GGGTTTACATTTGTGGGCAAGCAGATGATTTTTCACAACAAAAATGCGTT
TGTGTTGCACCTAGCCTTTATCAGTTGATCTGGAAAGGTCCTGAGCAACC
TGTTCAATACAAACCAGCTTGTATGTCCAATGGATGCTATGGGTGCTTTG
ATCCTGTCATGAGACATCGCTTGTTTAGATTCAAACAATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007547-exon-sc0000078-1491911889:74630..75116 | TCONS_00007547-exon-sc0000078-1491911889:74630..75116 | Clytia hemisphaerica | exon |
| TCONS_00007547-exon-sc0000078-1510915933:74630..75116 | TCONS_00007547-exon-sc0000078-1510915933:74630..75116 | Clytia hemisphaerica | exon |
| TCONS_00007547-exon-sc0000078-1575043694:74630..75116 | TCONS_00007547-exon-sc0000078-1575043694:74630..75116 | Clytia hemisphaerica | exon |
| TCONS_00007547-exon-sc0000078-1491911889:79913..80908 | TCONS_00007547-exon-sc0000078-1491911889:79913..80908 | Clytia hemisphaerica | exon |
| TCONS_00007547-exon-sc0000078-1510915933:79913..80908 | TCONS_00007547-exon-sc0000078-1510915933:79913..80908 | Clytia hemisphaerica | exon |
| TCONS_00007547-exon-sc0000078-1575043694:79913..80908 | TCONS_00007547-exon-sc0000078-1575043694:79913..80908 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:74630..80908 + |
Blast
The following BLAST results are available for this feature:
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