TCONS_00007599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007599
Unique NameTCONS_00007599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1010

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007599 ID=TCONS_00007599|Name=TCONS_00007599|organism=Clytia hemisphaerica|type=transcript|length=1010bp
TTCTAGGACAAGTGTAGTTTAAAGTTTAAGGAAAAATAATACAAAAGAAT
GGCAGTATCAAAGGTTTTCAGTCCTGGGGATTTAGTTTGGGCAAAAATGA
AAGGTTATCCACATTGGCCAGCACGggTGGATGAGCCACAACCAGGGCAA
GTCATACCAAAAAAGAAATATCTCATTTTCTTCTTCGGTACCCACGAAAC
TGGTTTCTTACCAGCTGATGGGttatataattttgaaaaacacaaagaaa
aatggTTCAAGCCAAACAAGCGAAGAGGATTCCCAGAAGCGTTAGATGAA
ATTATTAACAATCCAACTGTTGTTCATGTTGAAGCACCTCCTGATGAACA
CCCGTCATCAGAAAGTGAACCGGAAGAAGGAGCAGATGGGGATGCAGAGG
GTGCCAAACCACCTccacagaaaaagaaaaagcCTGCTCCACCAAAACGA
AAAAAGCCACAAGAGCCaaagaaaagtaacaagaaaGTGCGAGCAGTCAA
ATCACAAGATGAAattgatgatgaagatgatTGGAGTGATTCTGATGATG
AAGCACTCAAAATTGATgaaccaaaacaaaagaaaaaaCCAGAGGATTAC
GAAAGTTTTGAAGAACCGACATCCTCCTCTTCTTCAGAGAGCGAAGATTC
TGGTGAGGATTATGTACCagaagaaattgaaaagaaaaagaagccaCCTG
CAAAGCGGGCTCCTGCCAAAAAGGCTGCACCTAAGAAACCGCCTGCTGAG
AAAAAACCACGTGCCAAAAAGGAACCATCAGAAAAGAAACCACGAAAAGC
GCCACAAAAGAAACCTGCAGCCAAAGCTAAGAAAAGTACGAATGATGGAT
CGGATAGTGTGAGTTCAATCAGTTCCAGTAGTTCTGACGACAGTTCGGAT
GATGATATTGAACAACTGAGAAAGAAAATACTGAACAAAAATACCGAATT
AACAGAAGAAGAAAAAGCCGCCCAAGAGAAACGAGCGGAAGAAGCGCGCG
TACGCGATGN
Run BLAST on NCBI

transcript from alignment at sc0000078:556690..566280+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007599 ID=TCONS_00007599|Name=TCONS_00007599|organism=Clytia hemisphaerica|type=transcript|length=9591bp|location=Sequence derived from alignment at sc0000078:556690..566280+ (Clytia hemisphaerica)
TTCTAGGACAAGTGTAGTTTAAAGTTTAAGGtttgttttgagtttttttg
caTAATAATGAGCTATGAAGTACAGCCACACAACAGGATATACTAGGTTT
TGTAAGATGAAATTTTTCCCTGaaaaaatgggccattccagaatttgtct
tgTAACAACAGGGgaggggggcggacgacacaggatttctgaggacaaaa
gttttcaccaaaattcgaaatttccaaggcgagagaagaaaatgtatgaa
tttccaaggcaattgaattaaaaaaggcaaaaaagagtggaatttccgat
gcattttgcaaaagtacatggatttttatcagaatttccgaccaccactg
aaaaagaaaaattatttctgaggctagaaaaaattaaaaaatgcacgtcg
tccgaacgggggggggtaacaaaaattttctggaatggcccaattggtaa
cttgcatcagtggaggttCATTtgagagggctatgcatgttagcctccac
tgatgcaagttacccactcccGCGGTATCATTCGTTAAAAAAAGCTACAT
TGTCTGTTGTCTTGCATCTTGTCTTGTCCCTGggcgtgagattgggtaac
ttgcatcagtgttAGTGGAGAGGCTAACATGCCAtgcataccgtaagttg
gtctaatgtcgacatccgtcttctaattccgacacccttctttagagata
ggaacaatagaaactgaggaaggtcagaatcgctgattgactttgattag
cgccatgagaggaaaaatcacgacccacggcatggcccgaacatgtttgg
GCCTCTTGagtaatactttttaaaaatggcccgcgcagtttcggaccatg
ttcgggccacagatctgtaaaacccgaagagctagatttgcggcttttat
cgaaaagtgaagcctaggtttggaaggatttcctaccaaagtcacgtgac
taaaatatgcaatttcactggtttaagagatgtgaaatagcgtttgccgc
ctatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCGctctg
aaaacaattaaaatgctagatcctatccatcggcacgaaatttaaaaagt
caaatttttgcttcacttttttttgctggagaaagcttaatattgcctat
ctagcccttcgggctttactgATATCTGTggttcgggccagattttcgaa
aacttgctacgatcgcgcgtgtaatttcaggacccaatatttatatttca
aattccttattctagcaaacaaatttaaaaatcttcatctttattcaaat
atataNNNNNNNNtagcaaacaaatttaaaaatcttcatctttattcaaa
tatatactgttcaaatataaaagttaatcatctattttccaattaagtta
ggaaaattattaaaaaggatgatttgaatcttacataatatggtcttctt
tttattctttatctcattcccttttctcgtggtcttctcctattcgaagc
agaatttttctgaatcattttttgtactgttatacaactttgtgaatcaa
actggtatttggaactttgaatttgtctaatgaaaatatttaacaatgga
tgatgataaaccaggaaaggtaaataaaattaaattctactacTTAAagg
tccgaacaaaatgttcgggccgattcaataatacttttttgtggcccgag
caggGTCAGAACAGgaccgaacatgttcgggccatgccgtgggtcgtgaa
aaatctttagtctatcagtgatttcaacatttttcttattcctatctata
aagaaggatgtcggaattagaagacggatgtcgacattagaccaacttac
ggtagccctcaaatgaatgacctggctggtcattaatgTAAAAAGTGAAA
TTGGTAGAGTAGAGCCCAGTTTCCTGCAGAGTATGGCAAAAATCATCGAG
ATCTTGGTAAGATCTCGGGGGCATTTTGATGATGATATCTACATTTCAGG
CAGGGgcaaaattattgaaaactGGCTTTTTTGAGGTGGGAAACAGATCT
GAGTATGCAGGAAATCgctgtttttctggattttcattggactttttcct
tataattggttgtcttttcattcaaaaacattattaatagcaatgcccat
cATCAAGCATgtatcaattttcaataaaattgatttttgaagccagaact
atttaaaaatcgccggaacaacctatttttgccagaaagacaatattttt
ttgaatttctcaagctgtactttatatttttttatgaaattttgcacact
gataaTACAAAATGACAATACTTAAAATgcgacggagcccaattttcgaa
aaacatttttttccatccaaaaatgccggaaatatgccggaaaaaccggt
tttttgacattttctcgaattttcatttttagttttttctttttttttgc
agaaagatgtgtattcgcaatgctcaaaacatggccgagtttgatttgaa
aaaaacaatttccgggtaaaaatgccggaaatcgctgtttttgcattgga
ttttttccttatttctatgttttccacacaaaaacattattgataacaat
gctcaccatcaagcgtgatttaattgtcaataaaactgatttttgtgacc
agaactttctatttatttttgcccttgacccttccctctcccccatcaac
aatcaatgatcatagttcggacccccccccccctttttcccttttttgga
aggtgtcatcccccccccttaagaaaggggggggggggccccccccaaaa
aaaaatgaagttcatagttcgggccccccccccctttcttaaaGGAGGGG
GATGAgaccttccaaaaaagtgaagaagggggggggtcagaaattttcat
taaaaagggggatagcaaggagggAGGAttgtttaagaagggggggggct
cacatatattgtagattattttcaagcactgttaAGAAATTTGGTCTGCc
tgaaaggaagttctttattttcactaaaaagtggtatcATATTTGccaga
tttaatttttctttactgtttcctttccctttttaccataaaaaatttag
cccaaaacccttggggataggcatttttaagaGTTGGGgagatgccaaga
aggggggggggggtcagacccctttccgcactatgatgattaatttattg
cgttatgcatttttgctaaatgctatattttctgaccaattttttttcat
ttttctcctcgcattactatctaactttcatcatcaggtaggtccaatcg
GCATCTAGCTTGTTGTTGTTTATAGTCGTTAGATAATAACTTTTTCAAGG
ATAAATTGATCACTAAGGGATCACATGTGTCATGTGAGACCAATTGATAA
TAACAGAAGGTTATCCATTATTTCAATCTATGACATCTATTCTCAGGGGG
GCACTAGGATAATTATTAaattaaagtcaaaatttacgaaaatttTCTAA
TCTTCCCAACTTTAAAGACTCTTCTCAcgtttcattcattttattgTATA
CACTCCCTGCAATGTCTTGAGAATTTTGTAATTACGTCacgtttacacgt
ttttttgaaagtgacgtattaggTTGAAAACTCGAGAAAAGTCATAATCT
CGGAGGAGTTTGAAGGGTGCATTCATAAGTTACAGGTTACGTTATGCTCT
ATTGTTCTGTTtacaaaaatggtttcaaattttacatccaggcagctttt
ttaattctttttgtatCAGCCAATGAAATGGCTAGATAAGAGATCAAATG
TTTTGTTTGGAAAAGTTTGAATTGTTAAGATTAACTCTTCCTTGGATTTC
TTGTACACAAAGACATCCTTCTTGATTCACAGAAACGACAGTTGGTAAAT
TATTCTTGTTTagattaaaaatcaaataaagtTACTGCTAGAGTTCCAGA
CAGAGGACAGAGGAGattcttttttactttgtttAACATGTAGCTCTGTA
ATATTTGTGAAGGGGTGAAAAGTCACAAAGCTCTGTTGTATCGCTttttt
gttctgtaaatatCCCATTCTTATTTCGACTAGAATTAGATATATGTTTC
CATTCTAATCgattaaaattcaaaagatgTATAATCGATTAAAGATTATA
ATTGTGTCAAAGATAAGCcaaaaaggattaattaatcgaatacaGGGATT
AAATAACCGAAGCTATTCGACTAAATGACTGCAGCTATTTGATTAAATAG
TCAAGTTTTGGTATTTAATTTGTATATAAATGCACATAAGACTAGAAACA
TCCAATTGTCTACATTTGCATTTGCAATAAATGTCTGCATTTTCATACAG
GAAGTAGCTCCTCCTCAAGAGTATAGTAACATTCATAATTTGAAGTATGC
CCAGATACAAACCATGTTGACAAATAATCTAAATATAACTGCATGTAATG
ATTAAATTTCGAGTCACTTTCTTCTTGCTCTGTTTAAATCTTACAAAAAA
cgattttctaaatttgattaaatttagtGAATGGAAGGTCTAAAAACTTG
TCAAATTGAATACTCTCGAGAAAAGATTGCATGCAAAAAATATCATCTTT
TGTTGCATTTGTTTTTTTGATAGGAAAAATAATACAAAAGAATGGCAGTA
TCAAAGGTTTTCAGTCCTGGGGATTTAGTTTGGGCAAAAATGAAAGGTTA
TCCACATTGGCCAGCACGggtaatttaaattttcataatgTTGTATTGAT
ATATGACTATGCTATGAATAGCTAATAGCTCAATGCTACCAAAAGATTTA
CAAAAAGTTGTTTTACTAATTTACTAATTATACAGAgtttaacatttttt
tcatgtttAAGTATTTAGTTATTTGACATTTTCGaattctttttataaat
ttaaagatatttttatctTGGCAGGTCACATTTTaagataatttcatttt
ttatatctttatctttttattttccaggTGGATGAGCCACAACCAGGGCA
AGTCATACCAAAAAAGAAATATCTCATTTTCTTCTTCGGTACCCACGAAA
CGTAAGGAGttatctttctttttaaagGATTAATGTTGAGAATTTAGTTA
GTAAAGACATAAAGAGATACTAAGACTAAAGACTTATTGCTTTGTCATGG
TCTTAGCAAACTATAACATGCAtccagtgctgcaaataaggaatTTCAAG
TTGGCCGGTGATTACTCAATCAGAAAGCACTAATAATGAAACCATCAAAA
TTTCACGGGAAAAAACACGCATCATTAATTAATTTCGTTACTACAACCAA
ACACACAGCTGTACACAAAATGTTATCAAAGTATCTTCATGAGCAGCacc
tgaaaaacttttttatatttcaatatttttaacatcAAAAGCGTGACATT
CTTTTGTATCAATCTTCTGTTTTTCTAGTGGTTTCTTACCAGCTGATGGG
ttatataattttgaaaaacacaaagaaaaatggTTCAAGCCAAACAAGCG
AAGAGGATTCCCAGAAGCGTTAGATGAAATTATTAACAATCCAACTGTTG
TTCATGTTGAAGCACCTCCTGATGAACAGTTAGTAACTAATTTGCTTTGA
ATTCTCTTTACTTCTACATGCATTTAAATTATTGGATGCCAATTAAGGAC
TTGATTTTAAATTTGGGCATCCATTAAGAAGGCTCCTCATTTAACATATC
TCCTCCCATTTTGCTTATACACAGGATTTTTTCATAAAGAAAGGTTGACG
ACTTTCCAAACACTAGCCACAAAAGTTATTCTGTTAATTCTGCTTTTTAT
GAATGATCACTAATAAATAATGGTACTTGAGAGATGACATTTCTTTGTTG
AATTTGGGCGAACATCTACAATCTTCCTTTCAACTTAAATTTTAGCCCGT
CATCAGAAAGTGAACCGGAAGAAGGAGCAGATGGGGATGCAGAGGGTGCC
AAACCACCTccacagaaaaagaaaaaggtttatattcatttaaaagAATA
ATCTTTGTATTTTGGTGATAAGCTACTCATGTTTTTGTAAATCGTAGATT
GAGGCTTCTGAATGCAATCTACCCAAAGTGGGATACCCCAATAAAACATT
TCATGATAATTTATACCACTTCATTTTATTAATTCAAAAATTCATTGCAc
agaaaagtgtttttcttatttttatagcCTGCTCCACCAAAACGAAAAAA
GCCACAAGAGGTATGTATCTCTTCTTAAAATGTTTAATCAAGTGGTGCCT
CTTAACATTTCAGTAAGTGTCAGCAGTTTCTCCTATATCAATAAAAGATC
CAATTAATAAAAGGAATTCCTGGAATTCTGATATTTTTGTACCGGGTGAA
GTTGAACGTCTGGAGGTTGAACAAATTTATGCATGgcattttgatattta
gaaaataaagtttaaaaaagttatTGCTTTCATATCGTGTTCTTTTgttt
accttattggaactaattttcgcgggaactaattttcgaggtcgaaaaaa
aatttctgaaaaattgcatttcgcgggttttaattttcgcggttttttcc
attcaggaattttcgcgggttttaattttcgcggttttgcctttttttgg
acaaatttctttcattttcctagggatttttcaaatttttcgataaaatt
ggaaaaaattgtatttcgcgggaattaattttcgcggttttcgactctca
aaatttttcgcgggttcaaattttcgcgattttgacaaaaaaaccgcgaa
aaacgctaaaattaaaacccacaaaaattagttccaataaggtactaAAA
ACCAAATCACAAAGTCACACAAAAGTTATCCTGACTTAGGATTGAAGTAT
TTGCTTTTATATATAGCATTTTTAATTAGggccagggcaaaccagtccaa
catttcatccaacatgattttccaatgttggatgaaatgtttgatggaaa
aacttgcgttgGATTAAGCGAAAATCAAGGCtggggcaaaccgatccaac
atttcatccgacatgacttggaaaaaaatgaaaattcaaaaagataaaga
aaaaagtacgaccaaaccaatccaacacgaaaaattacacaattcaatga
gagagcttctttgatctcgctgaaaatgttggatgaaatgtttgatggcg
atcaaacttcatccaacaccatccaacacaatttttttcttctttttttg
acttttcatctttttccaaaaatctgaATTGACGCAAaccggtccaacat
ttcatccaacatcagaaaaaaggcatgttggatgaaatgttggatcggtt
tgccctTTTCCCTGCATAGCCaaagaaaagtaacaagaaaGTGCGAGCAG
TCAAATCACAAGATGAAattgatgatgaagatgatTGGAGTGATTCTGAT
GATGAAGCACTCAAAATTGATgaaccaaaacaaaagaaaaaagtatgGGA
AGTTTAGATTTTGCTTGTGCTCGCGAATTGTGGGTCCTGAACCTAAGCAT
TCTCTTTACATATGACAGAGTGTGGTTTTACAGTTTCTACTGCTTTTCAA
CACTGGTTGTTGTGATtgaaagatttcatttttaaacTGGTTCGCTTTCT
AATCTTGAAAAAGTTTCAGAGTTTAGAGAATACTATTACTAAGTTTGGTT
TCGATTATTTGGAAATTCTTCTATTTTTCTCTCGCAATGCATGTTAATGG
AATAGGCCCAAACTCAACTTCTTAAATTGAAGTTATTAAAGACATCAGGT
TTGAGAATACAACTTATGTTTCTTTTACACACAGCCAGAGGATTACGAAA
GTTTTGAAGAACCGACATCCTCCTCTTCTTCAGAGAGCGAAGATTCTGGT
GAGGTAGGTGGCATCTAATTTATTTGAGAACCTTTGGCACTGTACTGGCT
TGCTTGCCATAAATTATTGATGTCCCAATGGTTGTTAATCATGGGTAAGC
TCTTCACCTGCTTTTCGCCCTGTCTCTTTGGGATGAGTTGGAATTTCTAT
AAGATCCTtctctaattggtcatttgaagtaatagagatgacgcgttctt
tacaaaaagtaacaaaattgtttttacttaacgaccaaccaaatcaaata
agagcttgtaaaaactccagcttgtcccgcctattctaattgtgaattaa
agtgggcataAAGTTAGCTGTCTAAAGGCAATATATTGCTCTCTTTTgat
gtcaatgcaatgtcttctttcaatattttccaagcaaagatttttgcaca
ctttctgcctactctaacaattagaattaGCGgagcagaaagtcggccgt
ctaatcTATAGCTCAGATTGACTCCCGATAATAATCTTAATACCCAActc
taaataaagaataaataaataaataaaaatacaacTAAACTGTGTGTTTG
TGATTCAGGTTCAGGGGACGTTTATACTGAGAGCTTAAGCCAGTATATCT
ATTCATAAGTCTGTTTGCTTATTCTGCATAAAAACGCTTCTTACTCGACA
CTTTGCAGTCAAAACATTGTAAACTCTCTGGTCATTAAAATCTTATATTA
AAGTGATGACTGTTGAGTGTTGAATGGAACAATTAAGTTACGTCATGCgc
tatcttttgttttgttgattGGTTGAATAATTGCAATCTTTATGCAAGTT
CAAGCAGCGATTCAGGCCTCTGATAACATAATGTCAATCTGGCCTTAAGA
TTTATACtatgtttttatttgatcctTTAGGATTATGTACCagaagaaat
tgaaaagaaaaagaagccaCCTGCAAAGCGGGCTCCTGCCAAAAAGGCTG
CACCTAAGAAACCGCCTGCTGAGAAAAAACCACGTGCCAAAAAGGAACCA
TCAGAAAAGAAACCACGAAAAGCGCCACAAAAGAAACCTGCAGCCAAAGC
TAAGAAAAGTACGAATGATGGATCGGATAGTGTGAGTTCAATCAGTTCCA
GTAGTTCTGACGACAGTTCGGATGATGATATTGAACAACTGAGAAAGAAA
ATACTGAACAAAAATGTAAGTCCACTCTGATTACGTCTTTTTTTTGAAGC
AGGTGGATGAATTTTCTTCACAATCTGATTAGCGAAATTGAAATCACACA
TTTTATATTGAGCATGGTTTTTCACGTTGGCAATCAAATCTATATGATAT
GTTTTCGAAACGGATAGAATGCTGGCCGTGGACAAATCTCTAAGGGGGCT
GACTATTCTATCCCTACCAAACCTGATATCTATAATAACTTTAAAGACTC
CTTTTCGCAGAGGGTCTTCTTTTTATGTTACTCATAAAGAATTATCTTAg
tggaattttgatttttatacaAGTTTGACCGGTTGTTAGCTAGCGTCGGT
AGCGAAAGACCGTTAAGAAATTTTTCCTTTGGCTTGAAGTGCATTTCTCA
AAAAGTTCTACTCCTCCCCTCCCCACAAAAAGAGCACCTTTTCGAGAAGA
ATTCTTCAAGGTTCCATCCACATTATGGTTTAATATGCAATGGTAATGGT
CTTatgtttttctcatttcttAGACCGAATTAACAGAAGAAGAAAAAGCC
GCCCAAGAGAAACGAGCGGAAGAAGCGCGCGTACGCGATGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004289XLOC_004289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007599-exon-sc0000078-1491911889:556690..556719TCONS_00007599-exon-sc0000078-1491911889:556690..556719Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1510915933:556690..556719TCONS_00007599-exon-sc0000078-1510915933:556690..556719Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1575043694:556690..556719TCONS_00007599-exon-sc0000078-1575043694:556690..556719Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1491911889:561313..561408TCONS_00007599-exon-sc0000078-1491911889:561313..561408Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1510915933:561313..561408TCONS_00007599-exon-sc0000078-1510915933:561313..561408Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1575043694:561313..561408TCONS_00007599-exon-sc0000078-1575043694:561313..561408Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1491911889:561667..561740TCONS_00007599-exon-sc0000078-1491911889:561667..561740Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1510915933:561667..561740TCONS_00007599-exon-sc0000078-1510915933:561667..561740Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1575043694:561667..561740TCONS_00007599-exon-sc0000078-1575043694:561667..561740Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1491911889:562118..562267TCONS_00007599-exon-sc0000078-1491911889:562118..562267Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1510915933:562118..562267TCONS_00007599-exon-sc0000078-1510915933:562118..562267Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1575043694:562118..562267TCONS_00007599-exon-sc0000078-1575043694:562118..562267Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1491911889:562585..562666TCONS_00007599-exon-sc0000078-1491911889:562585..562666Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1510915933:562585..562666TCONS_00007599-exon-sc0000078-1510915933:562585..562666Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1575043694:562585..562666TCONS_00007599-exon-sc0000078-1575043694:562585..562666Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1491911889:562867..562899TCONS_00007599-exon-sc0000078-1491911889:562867..562899Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1510915933:562867..562899TCONS_00007599-exon-sc0000078-1510915933:562867..562899Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1575043694:562867..562899TCONS_00007599-exon-sc0000078-1575043694:562867..562899Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1491911889:564009..564131TCONS_00007599-exon-sc0000078-1491911889:564009..564131Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1510915933:564009..564131TCONS_00007599-exon-sc0000078-1510915933:564009..564131Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1575043694:564009..564131TCONS_00007599-exon-sc0000078-1575043694:564009..564131Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1491911889:564474..564542TCONS_00007599-exon-sc0000078-1491911889:564474..564542Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1510915933:564474..564542TCONS_00007599-exon-sc0000078-1510915933:564474..564542Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1575043694:564474..564542TCONS_00007599-exon-sc0000078-1575043694:564474..564542Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1491911889:565420..565704TCONS_00007599-exon-sc0000078-1491911889:565420..565704Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1510915933:565420..565704TCONS_00007599-exon-sc0000078-1510915933:565420..565704Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1575043694:565420..565704TCONS_00007599-exon-sc0000078-1575043694:565420..565704Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1491911889:566213..566280TCONS_00007599-exon-sc0000078-1491911889:566213..566280Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1510915933:566213..566280TCONS_00007599-exon-sc0000078-1510915933:566213..566280Clytia hemisphaericaexon
TCONS_00007599-exon-sc0000078-1575043694:566213..566280TCONS_00007599-exon-sc0000078-1575043694:566213..566280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:556690..566280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.6843	11.2679	7.51161	7.07857	21.0738	18.6697	16.1723	17.3126	12.8881	17.3387	11.6139	11.5333	7.41416	8.40887	7.59702	11.9455	15.5821	13.4851	5.75002	5.05612	7.15291	6.13898	10.9086	11.8562	4.60378	3.65805	7.44263	4.83374	11.3245	12.1562
Blast
[Close]
BLAST of TCONS_00007599 vs. Swiss-Prot (Human)
Match: HDGF (Hepatoma-derived growth factor OS=Homo sapiens GN=HDGF PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.529e-26
Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   46 RMAVSKVFSPGDLVWAKMKGYPHWPARVDE-PQPGQVIPKKKYLIFFFGTHETGFLPADGLYNFEKHKEKWFKPNKRRGFPEALDEIINNPTV 321
            R    K +  GDLV+AKMKGYPHWPAR+DE P+        KY +FFFGTHET FL    L+ +E+ KEK+ KPNKR+GF E L EI NNPTV
Sbjct:    3 RSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTV 95
The following BLAST results are available for this feature:
BLAST of TCONS_00007599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDGF2.529e-2658.06Hepatoma-derived growth factor OS=Homo sapiens GN=... [more]
back to top