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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007617 ID=TCONS_00007617|Name=TCONS_00007617|organism=Clytia hemisphaerica|type=transcript|length=329bp
ataATAATCAGACATATAATGACGGAATGGGTGCGAACAGTTTGGTTTGA
AGACGGGCAACAGTGTGAGTGTTCCGTACCCAAAGATtggatacaaaatc
aaattgTCAACCTGCCAGGTGGTGTCAAGATATTAGACGAACGGAAAACG
ACCAACGACAACAACCTCAATTTCCGGCCTCATTCAGTTTCGAACGACTC
AGAGGAACAACAGGGTTACAATTCTCACACGTCAAACTCATATCCATCGG
TACCGCCCTCTCTACAAAGACACAGCGCCGCTCATTTGATGCACACCCCA
ACGCAAACAAATATGCAAATGCCTGACCC Run BLAST on NCBI transcript from alignment at sc0000078:443333..446307- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007617 ID=TCONS_00007617|Name=TCONS_00007617|organism=Clytia hemisphaerica|type=transcript|length=2975bp|location=Sequence derived from alignment at sc0000078:443333..446307- (Clytia hemisphaerica)
ATAATAATCAGACATATAATGACGGAATGGGTGCGAACAGTTTGGTTTGA
AGACGGGCAACAGTGTGAGTGTTCCGTACCCAAAGATTGGATACAAAATC
AAATTGTCAACCTGCCAGGTGGTGTCAAGATATTAGGTATGTTTTCCCAT
GATATCCACTGCAATATCTACAGTTCTCTATCATGGGAGGAACAGTTCTT
CGATTATGATATATCAAAGACTCGATTTTTTGTGGCTTCTTGCCCTAGCT
CATCCTTTAAATGGTTTCTTTGTTTGTTCAGCTGAGTTTCCCCGGGGCTT
TAGATAGGTCTAAGTCTGGATCTTTTAACATTTCATCACGATTTGCTATA
GTAATTGTGTCCCATCTGTCCCTCTTAACATTAGCTCTCTGAACCTTTCA
TCACGAATTTTATAAGGACTCTAGTAACTTACTAAGTAAGGGTATCCTTC
CATTCTCCAAATTCACAAGCATGTACTCCTATACTCTTATGAATCCTTCC
CTGGAAACTGTTCAATACATGAATCATTTATTGAATGATTTATGGAGAGC
TCGGCAATCTAATCAACCACTTTTCCGAGTGTGAAAGTCACCAAGGTTAA
CATAAATCAAGATAAAACTGCAAATAGTCCTTCTTGGGTGTTTCTTTCCG
TTCATATTCAAATTTATATCAAAATAGCTCGAAAAATACTCGGTAGAAAG
TCAAAAATGAACACGATTCCGCAAATAATTGACCAGAAAAATCTTGAAAA
TCTTGAAACCTTGAAACTGGCTAAACCAACAGTGTGCTCTTGTATCAATT
AGCTCCTAATTAAAACCACTTTCAACATATTTCAGACGAACGGAAAACGA
CCAACGACAACAACCTCAATTTCCGGCCTCATTCAGGTACCCTTTTATAA
TGAATTTTGAAGCATGTTCCTTATATAAGATTTGCCTTAAATTTCACTTT
GATTTCATTAAACCTATATCAGAAAGGTAAAAATAAACCTGAAATCGAGC
AAAAAATGTAAACATTTCACACAAAGTCGAGCGACAAGATTGACAACTTT
TCGGAGGACAAAATTGGAGTGTGCATATAGAGCCCTTTCCAACATTAACA
AATCGTTTTTCTACCATTTTCAGTTTCGAACGACTCAGAGGAACAACAGG
GTTACAATTCTCACACGTCAAACTCATGTAAGTGAAATCAGGAGAGAGTT
CTTAACTCTTATTAAATAGTTGAGTTTCTTTAATCAGATATCAGCGAGGT
TAAGCAAGAAGCTATCTATTACGTACGGAATCCATTACGTGAGTTTTTAG
ACTGGATCCGAGGCGTTTTAGCCTGATTCCTAAAGCTTCACGGCATAGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTATAATTTCATAATTTCATTCCTAGTT
TACATAGGTACCAATCAAAAATTACTGCTTTATTTATAAACAAAAAAATA
ATCTGTAAGAGCATAGTGTATACAGTCAACAGTCTGTCATTCTTATTTAG
CTGCATTTCTATATGAATGCTTCACCATTAGCATTACCAATAAAAAAGTG
TACAAACCAGGTCTCGAGGTTCATATCTGGCAGGTGTTCCTTCTTCTGCT
TCTTTACATTCCAAGGTATCAATATCACCTTTTTAGGAAGGGAGATGTCT
CCTTTAGAATCAACCAAACTTTCTGGAACGTATAACATTATAATGTCGAA
GAAGTTGAAGGATGACCAGTCAATAAACATTTTTCAGTAAAGGATTGAGA
ACTTAAAGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCACGGGACAGAGTTA
GCCTTGAGATTCGGGCTCTAGCCCGCGAAAAACTCACGTAATAGATTCCG
TACGTAATAGATAGCTTCTTGCTTAACCTCGCTATCGTGTTGAAAACCTT
TACAGTAATCACTGTTCTTGATTCAGAAAGGTTTATAAAAATAACTATCA
AAAGTTGTTTTTGGAATGTTTTTTTTCGTTTCCACAGATCCATCGGTACC
GCCCTCTCTACAAAGACACAGCGCCGCTCATTTGATGCACACCCCAACGC
AAACAAATATGCAAATGCCTGACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007617-exon-sc0000078-1575043694:446172..446307 | TCONS_00007617-exon-sc0000078-1575043694:446172..446307 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1575043694:445422..445472 | TCONS_00007617-exon-sc0000078-1575043694:445422..445472 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1575043694:445131..445184 | TCONS_00007617-exon-sc0000078-1575043694:445131..445184 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1575043694:443333..443420 | TCONS_00007617-exon-sc0000078-1575043694:443333..443420 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1510915933:446172..446307 | TCONS_00007617-exon-sc0000078-1510915933:446172..446307 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1510915933:445422..445472 | TCONS_00007617-exon-sc0000078-1510915933:445422..445472 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1510915933:445131..445184 | TCONS_00007617-exon-sc0000078-1510915933:445131..445184 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1510915933:443333..443420 | TCONS_00007617-exon-sc0000078-1510915933:443333..443420 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1491911889:446172..446307 | TCONS_00007617-exon-sc0000078-1491911889:446172..446307 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1491911889:445422..445472 | TCONS_00007617-exon-sc0000078-1491911889:445422..445472 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1491911889:445131..445184 | TCONS_00007617-exon-sc0000078-1491911889:445131..445184 | Clytia hemisphaerica | exon |
| TCONS_00007617-exon-sc0000078-1491911889:443333..443420 | TCONS_00007617-exon-sc0000078-1491911889:443333..443420 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:443333..446307 - |
Blast
The following BLAST results are available for this feature:
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