XLOC_004300 (gene) - C. hemisphaerica

Overview
NameXLOC_004300
Unique NameXLOC_004300
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000078:437220..446339-

Legend: transcript
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004300 ID=XLOC_004300|Name=XLOC_004300|organism=Clytia hemisphaerica|type=gene|length=9120bp|location=Sequence derived from alignment at sc0000078:437220..446339- (Clytia hemisphaerica)
AAAAAATAAAATTATTAAAAAATATTCAAAAGATAATAATCAGACATATA
ATGACGGAATGGGTGCGAACAGTTTGGTTTGAAGACGGGCAACAGTGTGA
GTGTTCCGTACCCAAAGATTGGATACAAAATCAAATTGTCAACCTGCCAG
GTGGTGTCAAGATATTAGGTATGTTTTCCCATGATATCCACTGCAATATC
TACAGTTCTCTATCATGGGAGGAACAGTTCTTCGATTATGATATATCAAA
GACTCGATTTTTTGTGGCTTCTTGCCCTAGCTCATCCTTTAAATGGTTTC
TTTGTTTGTTCAGCTGAGTTTCCCCGGGGCTTTAGATAGGTCTAAGTCTG
GATCTTTTAACATTTCATCACGATTTGCTATAGTAATTGTGTCCCATCTG
TCCCTCTTAACATTAGCTCTCTGAACCTTTCATCACGAATTTTATAAGGA
CTCTAGTAACTTACTAAGTAAGGGTATCCTTCCATTCTCCAAATTCACAA
GCATGTACTCCTATACTCTTATGAATCCTTCCCTGGAAACTGTTCAATAC
ATGAATCATTTATTGAATGATTTATGGAGAGCTCGGCAATCTAATCAACC
ACTTTTCCGAGTGTGAAAGTCACCAAGGTTAACATAAATCAAGATAAAAC
TGCAAATAGTCCTTCTTGGGTGTTTCTTTCCGTTCATATTCAAATTTATA
TCAAAATAGCTCGAAAAATACTCGGTAGAAAGTCAAAAATGAACACGATT
CCGCAAATAATTGACCAGAAAAATCTTGAAAATCTTGAAACCTTGAAACT
GGCTAAACCAACAGTGTGCTCTTGTATCAATTAGCTCCTAATTAAAACCA
CTTTCAACATATTTCAGACGAACGGAAAACGACCAACGACAACAACCTCA
ATTTCCGGCCTCATTCAGGTACCCTTTTATAATGAATTTTGAAGCATGTT
CCTTATATAAGATTTGCCTTAAATTTCACTTTGATTTCATTAAACCTATA
TCAGAAAGGTAAAAATAAACCTGAAATCGAGCAAAAAATGTAAACATTTC
ACACAAAGTCGAGCGACAAGATTGACAACTTTTCGGAGGACAAAATTGGA
GTGTGCATATAGAGCCCTTTCCAACATTAACAAATCGTTTTTCTACCATT
TTCAGTTTCGAACGACTCAGAGGAACAACAGGGTTACAATTCTCACACGT
CAAACTCATGTAAGTGAAATCAGGAGAGAGTTCTTAACTCTTATTAAATA
GTTGAGTTTCTTTAATCAGATATCAGCGAGGTTAAGCAAGAAGCTATCTA
TTACGTACGGAATCCATTACGTGAGTTTTTAGACTGGATCCGAGGCGTTT
TAGCCTGATTCCTAAAGCTTCACGGCATAGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTATAATTTCATAATTTCATTCCTAGTTTACATAGGTACCAATCAA
AAATTACTGCTTTATTTATAAACAAAAAAATAATCTGTAAGAGCATAGTG
TATACAGTCAACAGTCTGTCATTCTTATTTAGCTGCATTTCTATATGAAT
GCTTCACCATTAGCATTACCAATAAAAAAGTGTACAAACCAGGTCTCGAG
GTTCATATCTGGCAGGTGTTCCTTCTTCTGCTTCTTTACATTCCAAGGTA
TCAATATCACCTTTTTAGGAAGGGAGATGTCTCCTTTAGAATCAACCAAA
CTTTCTGGAACGTATAACATTATAATGTCGAAGAAGTTGAAGGATGACCA
GTCAATAAACATTTTTCAGTAAAGGATTGAGAACTTAAAGCAGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATTTCACGGGACAGAGTTAGCCTTGAGATTCGGGCTC
TAGCCCGCGAAAAACTCACGTAATAGATTCCGTACGTAATAGATAGCTTC
TTGCTTAACCTCGCTATCGTGTTGAAAACCTTTACAGTAATCACTGTTCT
TGATTCAGAAAGGTTTATAAAAATAACTATCAAAAGTTGTTTTTGGAATG
TTTTTTTTCGTTTCCACAGATCCATCGGTACCGCCCTCTCTACAAAGACA
CAGCGCCGCTCATTTGATGCACACCCCAACGCAAACAAATATGCAAATGC
CTGACCCCNAATAAACCTGAAATCGAGCAAAAAATGTAAACATTTCACAC
AAAGTCGAGCGACAAGATTGACAACTTTTCGGAGGACAAAATTGGAGTGT
GCATATAGAGCCCTTTCCAACATTAACAAATCGTTTTTCTACCATTTTCA
GTTTCGAACGACTCAGAGGAACAACAGGGTTACAATTCTCACACGTCAAA
CTCATGTAAGTGAAATCAGGAGAGAGTTCTTAGCTCTTATTAAATAGTTG
AGTTTCTTTAATCAGATATCGTGTTGAAAACCTTTACAGTAATCACTGGA
TTCAAGGGTTCTTGATTCAGAAAGGTTTATAAAAGTAACTATTAAAAGTT
GTTTTTGGAATGTTTTTTTTTCGTTTCCACAGATCCATCGGTACCGCCCT
CTCTACAAAGACACAGCGCCGCTCATTTGATGCACACCCCAACGCAAACA
AATATGCAAATGCCTGACCCCCGTCTCCATCACAACATGCAAAATACAGA
CCCCCGTCAAACTCATCCAATACAAAGTTTAGACCCACGGTCAACAAACA
ATATACAAAATAACCGGCCTGATAACACACTACAGAGCTTAGACCCTCGA
CTAACGGTGTTAAATAACACACAGACGGGCGCTTCGAACGATCAAAGGGA
TCAACAAATCGGACAAAAACGGGACCGCTCGTCTGATATGGTTTCCATGG
TACCGCCAAATAAACTTACCATTTCTGAAAAGATGATTTCGAACCAGCAA
GAAGTCAAGATTGCACATTGTACAACTTGCAATTGTCATGTTAATAATGA
CTCTTTCCCTATGCGCGAACAAGGTCAGTGTGTTTTGAGAATATGTTTTA
ATCTTTGAGAAACAAAAGTTAGAAAGGGGCCAGTGAAAAAATATACCGGG
TGCGCCACAAAAAAGTTTCTCTCTTTAAAGTTAATTTTCTCGAAGTCTGA
AAATTTTAAAAGACCCATTCCTTTTTCATTGGAAAGAAGAATGATAAACT
TAAATTTTGATAGGTCATATATTGAATTTGGTTTATGAGACCAAAAGTTA
TGCTCGATTGAATAAAAAAGTTACTTTCAGAAAGTGCTCAAAAACGTTGA
AAATCGACCTATCAAATNACTTAAATTTTGATAGGTCATATATTGAATTT
GGTTTATGAGACCAAAAGTTATGCTCGATTGAATAAAAAAGTTACTTTCA
GAAAGTGCTCAAAAACGTTGAAAATCAACCTATCAAATTTTATTTTAAAA
TATGGCAGTCGTGATAACCTTTGTACGAATAAGAGCATTTCTTAGCAATT
ATACGCATAGATTTTGAAACTTAAGCCTAAAAAGGGTTTATAACCTTTAT
GAAAATCATTTTATTTGTTTTCACCGAGTTTAGCATTAGATTTTTGGTTC
TAGACTGGATAATGTCAATGTAAGGCTGGATTTATCTCGAAACCTATATT
TCATGCATTTTGATTAATTTTGCCAGAATTTTTGGCATTTTCTGAAGAAT
TTTCTTCCTTTAGTTGAAATTCTACTTTCCTTTGTAAAACAAAAGGTCAC
TTTGACAGCTAATTATATTTTTTAATGACTAGAACAACAATACTGATGTA
TCATGTGATCGAGCTTCCGTTTAATTTGATAGGCTGATTTTCAACGTTTT
CGAGCACTTTTTGAAAGTAATTTTTTTATTCAATCGAGCATAACTTTTGA
TCTAATAAACCAAATTTAATAAATGACCCATCAAAATCTAAGTTAATCTT
TCTTCTTTACGATAAGAAAGGATTCGTTCTTTAAAAAATTTTAGATCTCG
GAAAAGTTCACTTTAAAAAGAGAAACTTTTTTGCGGCGCACCCGGTATTA
GTTTTGGTTTTTGAAAATTTAGAATTTAAATTTGTTACGCCAAAAATTAT
TGTTTTGAGATCAGAGGAATGTAAAGAGATGGAAAAACAGCTTCTTGAAA
ACATTGGAAAAACGGCTCGTCATATACCAGGTCTCTTGCCCTTAAGGGAG
TTTATGTCGAGTAAATAGGTTGCTTTTGTTGTCGCTATAAAAAATCTGCA
TAATTAGCGTGTTGTGACAAAATTCTTTTGTTTCAAGCTTGATTATGCGC
AAACTTTTAGGGCTTATATTTTGGGTACACCTCTCCTATACGAAAAGGTA
CCTATATCTTCTTGCTCAGAATTTCCTAGCGATTCTACTGATATAACCGC
ATCATGACCGCACTATAATATGGAAAGCTAGAGATCGAGAAAATTATAAC
TTCATCTTGATTTTACTCGACTTCTGACAGCTTTACAAGAACCAATTTAA
TATCATTGCGTTAAGAATTTCTTTTGCTATACATTGGTAAAAATATTGCT
ACTTATTCTTAAAAATTGAACTAGTAATCGGCAAAAAAGGAAAAACAAAT
TTTCATTTTTATCGTTTAATCATGTAGAAACCGTCCGATTTGTATGGCGA
GCCGTCTTTGCTTCCAGCTTTTAGCTCATTTTTGCTATTTTAGTATTCGC
AAATTCTTCCTTTATTTTCCTTTATTTTGTTTTTCATGTAGATTTCCAAC
GGACGGTGGTGAACGTCCTCTTAGACATGAAGCAAGAAATCCGGAAGTTA
GCCAGAGGTCCGGTCGATTTACCGGACATGCGTATCGAACCGGCTGACGA
TTTTGTGGACTTCATACGACTGGAAGAATCGTTGAAAGATCCAGACACAT
ACAATACCTTTGTAAGTTTCTTTCGACTGAGGATTGTTTGAATAAGACAT
GAAACTGTCAGTATTGAGATACAATTATTTTCACTGTTTCAACAATTTCA
ATTTAATCTGATTTTGGTTGGTTAAGCACTCTTATTGATGAATAAAAGCA
TCACATCAACAAAATAAGTTTCTTTATATATGATACCAGTTGTGACCATT
TTGAAAATGTCACCAAGGGGACATTCTAAAAGTTTTATCATCAGTTTTCA
ATATGAAACCTAACCTCATTCCCTGCGTATTATCGGTTTTTTGATGCTCA
CTGATAACGCAAAATAATTCTCCAACCATCAGTTGCAAAATAAAGCGTGG
GATACACGGAGTTGATTTTACTGATTATAAACTTGATACAATCGTGAGCG
TGTCCTTTCGTGAGCGATACCAGGTTCATAAAAAAATCAAACTAAATGTT
TGGATTAGAGTTTGATCAATTTGATGTTTGAACCAGCGAAGTAAATTTTT
TTGAGCTAAACCCCCAAATCGTAGAAGTTGTGGCTTCCTAGGAGAATATT
TGGAGGGACGTGTATGGATCTGAACCAGTCCCCCTGTGACTTTAGCAGGC
ATTCTTTAATTCTTCCCATAGAAATTCCAACTGGCGAAGATTGGTGGGAT
CGATACAATGGACTGTACCAAGAGAATCATGATTGTGTAAGACATGTACC
GAATTTCTGTTTTACACTTTTGAATGTCTGATGATGGGGAATTTCTATTT
CTTTTGAAAAAAATAAAACTTTTACCCTGGTACTAATATTTATCGGCGAT
CCAAAAAATATCTGCAATCTGATTGGTTAAAAAGAGTACAATATATCTTG
TATTTTACATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGAAATATTTCA
CTCGTTCCGGATTTTCCGTATATTTTCCTCGCCTAAAGGCTCGGAAAATA
TTGTACGGAAAAATCTCGGAACTCGTAAAATATTTCTCATTTTGTACTCG
CAACTGTCCGATAACTATTACGTATATAACAGTTTATTTGATATTGATGA
AAAGGTAACAACAAATTCCAATAAAAGTCAACGCTACTTCACAATTGAGA
AATAGATTCGTTTTTGTGGCATCTCATCGTCACTGCTAGACACTCTGGTC
GGGATCTGCCTATATTGGTAGACGGAATTTTTCGGTGCCTTTATTAGGCG
AAAGTTTCAGGTTCTAACTGCATCTCTTGCAAAATCAATCAAATAGCAGT
AACGATAAACTATTTGTTTTCGTTCACTATTTGTTTAGCCTGATGACCAA
TAAGCTGATGTCCGAATTCAATATGGAAGGAAAAGGGAACAAAAAGAAAC
GGCCCTTCAAAAACACCAAAGCATTGGAGCTAATAACCGGTTGGTGAAGC
TGTTGCTCGTTCAGTTTTTTGAATTGTGTTTTTATTTTCATTCTTTGGTC
TTTTCCTGGCTGGCTGCTTTTGTTTTGCAATTGTTTGTTAAACTCGAGAT
TAATTGAGTTAAATCATGTGATCTGAGCATTTCTGAATATTTCTAACAAA
TTTTGTAAATTAACTAATTACGTATAAGTTTGAATAATTTTCTCAATGGA
CTTTGCCCTGTTTGAAGGGTGTCTATTTATGAAACCTGAGGGGTAACTTT
GCAGCCTTCAGTTAACAGCATTTTCTAGTCTTTGATCTGTTAANGGCTGG
CTGCTTTTGTTTTGCAATTGTTTGTTAAACTCGAGATTAATTGAGTTAAA
TCATGTGATCTGAGCATTTCTGAATATTTCTAACAAATTTTGTAAATTAA
CTAATTACGTATAAGTTTGAATAATTTTCTCAATGGACTTTGCCCTGTTT
GAAGGGTGTCTATTTATGAAACCTGAGGGGTAACTTTGCAGCCTTCAGTT
AACAGTATTTTCTAGTCTTTGATCTGTTAAAGACAGAATTCACAACGTGA
CTTGTTTACATTCCAGTATAATCCCCAATTTACTTACCAGAGAAGTCCAT
TGCTTAGAGGTTATGGGACTTAACCCCTTACTATGAAAATAACCCGAATC
GATGGTAATACGCGAAGAATCCAGTCTTAATGTTCTATAACTTAATCTCT
AGGTGCAATCCATTTACAAATCAAGACAACCGACAAACTAGTATACGACG
CCGTTAAAGATTTACTACGTCGTGCTCCTGACCGTAAAGGAGGTGCAGGT
CGGACGGAGCACCTTTCGGAAAGCCCCAGTTTCATCGTTGCGACCTCGAC
GACACCCACTCAACCCACACAACAAGTTGCTAGCATCTCGCAACATCCGC
AACAGAGCTCGCAACCACCTCAACCACACCAACAAACTCATCCAAACCCT
AACACCAATAATGTACAGCCACCTTCTTGAAAGACATACAAGACATTTGT
TTTGACCTCTGGCATTGTTGAGTTTCATTTGGTTTTTTCTCTCTATATTA
AAGTCGAAAATGTAGACTTTTTTTGCCGTTCTGTAAGAGATAGTCCAGAT
CAAGAAAGAGTTCTTTCACACTCTTGAATTGAACATTGGACTTTCAATCA
ATTCAAGTCAGAAGTAATCAGCAGGAATATTCTTTCCTTTTTGAAGATTT
TCAATGTGCAGTAGGCAACATTTACTCAAATTGCGTCTCACTGTTAGAAC
TACTTTATAATTTCTTTATATGATTCAATCGGTGATGATTTTAAACTAAA
TATATTCAAATTATAATTTATTATTTTCTTAATATTCTGTTGTTATTTTA
GTTTAAATTATTTTTAACTTTTTTTTTAAATTTTATTCTGTAGGAAACTA
CTTTTTCTGCTCCAAACTCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007617TCONS_00007617Clytia hemisphaericatranscript
TCONS_00007616TCONS_00007616Clytia hemisphaericatranscript
TCONS_00007615TCONS_00007615Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:437220..446339 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96	2.49	2.68	2.95	39.87	40.01	33.07	39.85	11.96	19.13	13.48	8.07	15.53	11.43	11.25	13.51	21.75	19.34	6.48	9.54	8.58	8.73	14.38	15.04	21.9	17.28	9.32	9.12	12.02	16.38