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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007630 ID=TCONS_00007630|Name=TCONS_00007630|organism=Clytia hemisphaerica|type=transcript|length=2935bpRun BLAST on NCBI protein sequence of TCONS_00007630-protein >TCONS_00007630-protein ID=TCONS_00007630-protein|Name=TCONS_00007630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=835bp MSQPTSNTGRNQSQRGGHGGRRGWRGRFRGRGAYNQQSRQSTVNTQRAPIRun BLAST on NCBI transcript from alignment at sc0000078:585627..623300- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007630 ID=TCONS_00007630|Name=TCONS_00007630|organism=Clytia hemisphaerica|type=transcript|length=37674bp|location=Sequence derived from alignment at sc0000078:585627..623300- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000078:585627..623300- >TCONS_00007630 ID=TCONS_00007630|Name=TCONS_00007630|organism=Clytia hemisphaerica|type=CDS|length=2508bp|location=Sequence derived from alignment at sc0000078:585627..623300- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007630 vs. Swiss-Prot (Human)
Match: MCM8 (DNA helicase MCM8 OS=Homo sapiens GN=MCM8 PE=1 SV=2) HSP 1 Score: 795.423 bits (2053), Expect = 0.000e+0 Identity = 438/788 (55.58%), Postives = 567/788 (71.95%), Query Frame = 2
Query: 215 PFKKWSTYLVDEVYTPNSEFVNTITALYRYFKNNLHQFNXXXXXXXXXXXXDLHALKTNTDLQEHLPTLCEDIRNNPSRMIPALAMVIHESFLDD--------QFEES-PQSITVFFDVPYLNVRLLNYEPITPLKSLKSSYFGKLVSIKGTVVRVGNIKPILTKMAFQCNSCGIQQVLSITEGKYETPTSCLGDDCRARSFTPLRSSPKTETVNWQLIKLQEIMLDDQREAGRIPRNIECELTHGLVDNCTPGDMVTITGIVKVSKNEENKFRGGGKGNSMYLLFIQAISISNDK--EIKESGNAEENN---DFSIKDLYAIQEIQSEKELFRLVVGSLCPAIYGHELVKAGMVLALFGGTKKFTDEKNAIPVRSDPHVLVVGDPGLGKSQLLQAVSNVAPRGVYVCGNXXXXXXXXXXXXKESGSSDYALEAGALVLADKGCCCIDEFDKMTDQHQALLEAMEQQSISLAKAGIVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMNSALLSRFDLVFILLDKPDEEMDCILSEHVMALHSDDPKDLSFRAIPATPSVRTTTQNLNQSVTVQRDGPDKKPGLLQLWESENSLKKMLKIKRGENFDPVPPQLLRKYIQYARKYVNPKLSTDASKILQEFYLNLRKQQQGPDSTPITTRQLEAMIXXXXXXXXXXXXXXXNVNDAREVVEIMKNSLVDTCSTENGELVFDRSINGSGMSKRNQCKYFVAELNKIAEREKSNLFTTEQMYRIAKQLNINMKNFDDFISTLNTQNFLLKKGFRTYELQT 2536
P+K W Y EVY+ +S + I A ++F ++ ++K+E+E + +L+D L ++ +P + ++R+ P + + + + IH+ D Q +E +VP+++ R+ NYEP+T LK+++++Y+GK ++++GTVVRV NIKP+ TKMAF C +CG Q + +GKY PT C CR RSFT LRSSP T T++WQ IK+QE+M DDQREAGRIPR IECEL H LVD+C PGD VTITGIVKVS EE K M+LL+I+A SISN K + K S + ++ +FS+KDLYAIQEIQ+E+ LF+L+V SLCP I+GHELVKAG+ LALFGG++K+ D+KN IP+R DPH+LVVGDPGLGKSQ+LQA NVAPRGVYVCGNTTTTSGLTVTL+K+S S D+ALEAGALVL D+G C IDEFDKM +QHQALLEAMEQQSISLAKAG+VCSLPARTSIIAAANPVGGHYNKAKTVSENLKM SALLSRFDLVFILLD P+E D +LSEHV+A+ + R I + R +Q+ N SV L++ SE L + LK+ GE DP+P QLLRKYI YAR+YV P+LST+A+++LQ+FYL LRKQ Q +S+PITTRQLE++IRLTEARARLELRE+A DA ++VEIMK S++ T S E G L F+RS +GSGMS R+ K F++ LN +AER +N+F Q+ +IAK+LNI + +F++FI +LN Q +LLKKG + Y+LQT
Sbjct: 74 PYKGWKLYF-SEVYSDSSPLIEKIQAFEKFFTRHIDLYDKDEIERKGSILVDFKELTEGGEVTNLIPDIATELRDAPEKTLACMGLAIHQVLTKDLERHAAELQAQEGLSNDGETMVNVPHIHARVYNYEPLTQLKNVRANYYGKYIALRGTVVRVSNIKPLCTKMAFLCAACGEIQSFPLPDGKYSLPTKCPVPVCRGRSFTALRSSPLTVTMDWQSIKIQELMSDDQREAGRIPRTIECELVHDLVDSCVPGDTVTITGIVKVSNAEEGSRNKNDK--CMFLLYIEANSISNSKGQKTKSSEDGCKHGMLMEFSLKDLYAIQEIQAEENLFKLIVNSLCPVIFGHELVKAGLALALFGGSQKYADDKNRIPIRGDPHILVVGDPGLGKSQMLQAACNVAPRGVYVCGNTTTTSGLTVTLSKDSSSGDFALEAGALVLGDQGICGIDEFDKMGNQHQALLEAMEQQSISLAKAGVVCSLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEHHDHLLSEHVIAIRAGKQ-----RTISSATVARMNSQDSNTSV-------------LEVV-SEKPLSERLKVVPGETIDPIPHQLLRKYIGYARQYVYPRLSTEAARVLQDFYLELRKQSQRLNSSPITTRQLESLIRLTEARARLELREEATKEDAEDIVEIMKYSMLGTYSDEFGNLDFERSQHGSGMSNRSTAKRFISALNNVAERTYNNIFQFHQLRQIAKELNIQVADFENFIGSLNDQGYLLKKGPKVYQLQT 839 The following BLAST results are available for this feature:
BLAST of TCONS_00007630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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