|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007635 ID=TCONS_00007635|Name=TCONS_00007635|organism=Clytia hemisphaerica|type=transcript|length=2747bpRun BLAST on NCBI protein sequence of TCONS_00007635-protein >TCONS_00007635-protein ID=TCONS_00007635-protein|Name=TCONS_00007635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=587bp MPIKSKKEKTDKKDKNKGNQQQPSQSSEDDKMKSSAPPATPVAKKGVSTMRun BLAST on NCBI transcript from alignment at sc0000078:663792..689220- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007635 ID=TCONS_00007635|Name=TCONS_00007635|organism=Clytia hemisphaerica|type=transcript|length=25429bp|location=Sequence derived from alignment at sc0000078:663792..689220- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000078:663792..689220- >TCONS_00007635 ID=TCONS_00007635|Name=TCONS_00007635|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at sc0000078:663792..689220- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007635 vs. Swiss-Prot (Human)
Match: 2A5D (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Homo sapiens GN=PPP2R5D PE=1 SV=1) HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0 Identity = 363/555 (65.41%), Postives = 439/555 (79.10%), Query Frame = 3
Query: 336 SSAPPATPVAKKGVSTMAGLLKRGERRQGSSNYYKVSMNRELQKLPLIKDVTASERENLFLQKLQQCCTLFDFVVDPLSDLKWKEVKRAALNEIVDYVTNNQGVITEAIYPEAVHMFAVNIFRSLPPSANPAGAEYDPEEDEPTLEAAWPHLQIVYEFFLRFLESPDFQPNTATAKRHIDQNFIVKLLDLFDSEDPRERDFLKTILHRIYGKFLNLRAFIRKNINNLFYGFIYETERHNGVAELLEVLGSIINGFALPLKEEHKIFLLKVLLPLHKAKALSVHHPQLAYCVVQFLEKDPQLTEPTIMGLLKFWPKVHSPKEVMFLNELEEILDVIEPNEFVKVQKALFRKLAQCVSSPHFQVAERALYYWNNEYIMSLVSDNATVILPIIFPSLYKNSKSHWNKTIHGLIYNALKLLMEMNQRLFDECAKKYNIEVEKEAQKLEERENAWHRIFDLALKNPESSKYLTMREDMFEDYPSIQNKINQLKSLNGKSGIDINQLHNVVE-HCADIIHNPQPKRVGQRRKSELPLPNATIQALAKHRHPDDHLSAQDET 1997
+S PP T ++K S ++K+ ERRQ SS + +S NRELQKLP +KD ERE LF+QKL+QCC LFDFV DPLSDLK+KEVKRA LNE+V+Y+T+++ V+TEAIYPEAV MF+VN+FR+LPPS+NP GAE+DPEEDEPTLEAAWPHLQ+VYEFFLRFLESPDFQPN A K++IDQ F++ LLDLFDSEDPRERDFLKTILHRIYGKFL LRA+IR+ IN++FY FIYETE HNG+AELLE+LGSIINGFALPLKEEHK+FL++VLLPLHK K+LSV+HPQLAYCVVQFLEK+ LTEP I+GLLKFWPK HSPKEVMFLNELEEILDVIEP+EF KV + LFR+LA+CVSSPHFQVAERALYYWNNEYIMSL+SDNA +LPI+FP+LY+NSKSHWNKTIHGLIYNALKL MEMNQ+LFD+C ++Y E +K +++ERE W +I +LA NP+ MF P + + + DI L VE ++ + + ++V RRKSELP TI+AL H+ ++ L+A E
Sbjct: 61 NSTPPPTQLSKIKYSGGPQIVKK-ERRQSSSRF-NLSKNRELQKLPALKDSPTQEREELFIQKLRQCCVLFDFVSDPLSDLKFKEVKRAGLNEMVEYITHSRDVVTEAIYPEAVTMFSVNLFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIA--KKYIDQKFVLALLDLFDSEDPRERDFLKTILHRIYGKFLGLRAYIRRQINHIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKMFLIRVLLPLHKVKSLSVYHPQLAYCVVQFLEKESSLTEPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSKVMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAARVLPIMFPALYRNSKSHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQYKAEKQKGRFRMKEREEMWQKIEELARLNPQYP--------MFRAPPPLPPVYSM--ETETPTAEDIQLLKRTVETEAVQMLKDIKKEKVLLRRKSELPQDVYTIKALEAHKRAEEFLTASQEA 601 The following BLAST results are available for this feature:
BLAST of TCONS_00007635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.