TCONS_00007660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007660
Unique NameTCONS_00007660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007660 ID=TCONS_00007660|Name=TCONS_00007660|organism=Clytia hemisphaerica|type=transcript|length=762bp
atccGATCTAAGAGCATCCTTATATCGGCTGGAAGGTTTGAAAGTGTTTC
GGTTCAGTTCGGTGTTTCTTTCGACATCTCCGACATCTTTCCTCCACTTT
TAGCTAATAACTTTAGATCGAACATAAAAAAGGTTCACGATGGCTGGTTA
TGCGAAGAAAGCAACACAGCTAGTCGGTCTTGCAGTGGCAAAAGCTCCAA
GAAAAACATTGACTGAAATCTATTCAAAAACACTTGGTGTTCTCAGCACG
TTACCCGAATCCTCAGTGTATCGTCAACAAGTTGAACACATCACAAATCA
AAGACTAGAACTTGTAAAGAAGACAGAAGATGTTATGAAGCTCGAAAAAC
TTATCAACTGTGGGCAAATTGAGGAAGTGATGGTTCAAGCTAGCGATGAG
CTTCAACTTGTAGAGCAGATGGCTCAATGGCAAGTCTGGGAAGCTCCAGA
ATCTCAAGCACCAGCCGGTCAATGGTGAAAAGAACATTCTAGCgttatat
aagaacatgtaaATAAGTATTTTTGATATGCTTCTAAATGCAAAGCAATA
GAACAGAGCAATTATAACGATAAATACATCAATGATTTATatataaagat
taagaaactttgtatttcttttcaatacttaaagtttcttgcttacgcat
tcatcagttgattagaaattccacgtttatttaaaaaattcaatacagcg
tcttcatataaaaaaattgacgtcaatctTTAGAATCGAAGTTTTCAAGT
AGGTGTTTGTTT
Run BLAST on NCBI

protein sequence of TCONS_00007660-protein

>TCONS_00007660-protein ID=TCONS_00007660-protein|Name=TCONS_00007660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MAGYAKKATQLVGLAVAKAPRKTLTEIYSKTLGVLSTLPESSVYRQQVEH
ITNQRLELVKKTEDVMKLEKLINCGQIEEVMVQASDELQLVEQMAQWQVW
EAPESQAPAGQW
Run BLAST on NCBI

transcript from alignment at sc0000078:277982..278743

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007660 ID=TCONS_00007660|Name=TCONS_00007660|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at sc0000078:277982..278743 (Clytia hemisphaerica)
AAACAAACACCTACTTGAAAACTTCGATTCTAAagattgacgtcaatttt
tttatatgaagacgctgtattgaattttttaaataaacgtggaatttcta
atcaactgatgaatgcgtaagcaagaaactttaagtattgaaaagaaata
caaagtttcttaatctttatatATAAATCATTGATGTATTTATCGTTATA
ATTGCTCTGTTCTATTGCTTTGCATTTAGAAGCATATCAAAAATACTTAT
ttacatgttcttatataacGCTAGAATGTTCTTTTCACCATTGACCGGCT
GGTGCTTGAGATTCTGGAGCTTCCCAGACTTGCCATTGAGCCATCTGCTC
TACAAGTTGAAGCTCATCGCTAGCTTGAACCATCACTTCCTCAATTTGCC
CACAGTTGATAAGTTTTTCGAGCTTCATAACATCTTCTGTCTTCTTTACA
AGTTCTAGTCTTTGATTTGTGATGTGTTCAACTTGTTGACGATACACTGA
GGATTCGGGTAACGTGCTGAGAACACCAAGTGTTTTTGAATAGATTTCAG
TCAATGTTTTTCTTGGAGCTTTTGCCACTGCAAGACCGACTAGCTGTGTT
GCTTTCTTCGCATAACCAGCCATCGTGAACCTTTTTTATGTTCGATCTAA
AGTTATTAGCTAAAAGTGGAGGAAAGATGTCGGAGATGTCGAAAGAAACA
CCGAACTGAACCGAAACACTTTCAAACCTTCCAGCCGATATAAGGATGCT
CTTAGATCggat

Coding sequence (CDS) from alignment at sc0000078:277982..278743

>TCONS_00007660 ID=TCONS_00007660|Name=TCONS_00007660|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000078:277982..278743 (Clytia hemisphaerica)
TCACCATTGACCGGCTGGTGCTTGAGATTCTGGAGCTTCCCAGACTTGCC
ATTGAGCCATCTGCTCTACAAGTTGAAGCTCATCGCTAGCTTGAACCATC
ACTTCCTCAATTTGCCCACAGTTGATAAGTTTTTCGAGCTTCATAACATC
TTCTGTCTTCTTTACAAGTTCTAGTCTTTGATTTGTGATGTGTTCAACTT
GTTGACGATACACTGAGGATTCGGGTAACGTGCTGAGAACACCAAGTGTT
TTTGAATAGATTTCAGTCAATGTTTTTCTTGGAGCTTTTGCCACTGCAAG
ACCGACTAGCTGTGTTGCTTTCTTCGCATAACCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004333XLOC_004333Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007660-proteinTCONS_00007660-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007660-exon-sc0000078-1491911889:277982..278743TCONS_00007660-exon-sc0000078-1491911889:277982..278743Clytia hemisphaericaexon
TCONS_00007660-exon-sc0000078-1510915933:277982..278743TCONS_00007660-exon-sc0000078-1510915933:277982..278743Clytia hemisphaericaexon
TCONS_00007660-exon-sc0000078-1575043694:277982..278743TCONS_00007660-exon-sc0000078-1575043694:277982..278743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:277982..278743 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
144.541	152.712	162.204	161.321	74.0581	54.0096	74.5632	76.6004	83.2558	65.6925	65.5176	71.3539	62.5506	69.612	50.5275	51.9954	111.685	108.501	33.0079	34.7545	93.6014	88.2249	84.0778	74.9008	141.963	132.477	42.1373	30.2304	38.3806	33.5901
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006806ETC_CI_29_9
Vocabulary: Biological Process
TermDefinition
GO:0022904respiratory electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0005743 mitochondrial inner membrane
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
Blast
[Close]
BLAST of TCONS_00007660 vs. Swiss-Prot (Human)
Match: NDUA5 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Homo sapiens GN=NDUFA5 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 2.165e-27
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 2 
Query:  140 MAGYAKKATQLVGLAVAKAPRKTLTEIYSKTLGVLSTLPESSVYRQQVEHITNQRLELVKKTEDVMKLEKLINCGQIEEVMVQASDELQLVEQMAQWQVWEAPESQAPAGQW 475
            MAG  KK T LVGLAV   P + L  +Y+K L VL  +P+++ YR+  E ITN++L +VK   DV KLE  +  GQ+EEV++QA  EL L  +M +W++WE    + PA QW
Sbjct:    1 MAGVLKKTTGLVGLAVCNTPHERLRILYTKILDVLEEIPKNAAYRKYTEQITNEKLAMVKAEPDVKKLEDQLQGGQLEEVILQAEHELNLARKMREWKLWEPLVEEPPADQW 112
The following BLAST results are available for this feature:
BLAST of TCONS_00007660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUA52.165e-2746.43NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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