TCONS_00007697 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007697
Unique Name	TCONS_00007697
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1053

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000079:104724..108101+
coding sequence from alignment at sc0000079:104724..108101+

transcript sequence

>TCONS_00007697 ID=TCONS_00007697|Name=TCONS_00007697|organism=Clytia hemisphaerica|type=transcript|length=1053bp
CACAGATACTCCAATTCGAAAAGATGTGGTCATTGGTCGAAGTTTTGTGT
TACAATGTCCAAAGCTTTCATATAATTTccctcaaaatattttatggGGT
ACAGTTCCGCAAAACGGGAAACCTATTTTGTTGGCGGATACCAAAGAAAG
ATACCGGATGTCGAACGGAGATCTTTTGTTTACTCACGTGACTGAACAAG
ATTTAAAAGATGTTAATGATTTGATTGGTGGAATTTCTTGCATAAATTAT
CATAATGGATTATACGTCCAATCAGTAAAATTCAATTTGAAACGAGTGAC
AGCATTCGATGATAACTTCGCACCCAGTTTTTTGGAAAGCATTTCTAGCA
CCAATGATGCTTACGAGGGAGAAAAGTTCAAGTTTAAATGTTCTGCTGGT
GGAAGACCGACTCCTAAAGTCACATGGTTTGGTCCACGTGGTGAGATTGA
CAACTTGAACCCAGACTACCAAATTTCACTTCCCGAGAATATTCTAACTA
TTCCAGCTGCTTATCCAAGATTAGCTGGCAATTACCGTTGTGTTGTAAAA
AATTCTCAAGGCACAAGACAATCAGAAGGGAAACTTGTGATCAAATCTTT
CccaaaatggaagaaaaaattaaaggaCGAGACAGTTGATGAAAATTCTC
AAATCACTTTAAAAGTGGATGCTATTGGATCAGGAATACTGGCATATGAT
TGGTTCAAAAATGGGCAACCTATTGACCGTACCAATTCAACGTACAAGGT
CAATGGAAACTCACTTACCGTCAAGAATATTCGAAAATCTGATTTTGGTT
TCATTCAAGCTTTTGTAAACAATGGACAACAAGAAATTTCTTCCACTGCT
TTCTTAAATGTCAAGGGAGCAGAAATCCCGTCAGCAAGGAAACTGAAGAA
AGAGAAGAAGTTCTATGAATTCTATATTTTGATCGGAATAGCGAGTATCA
TTCTACTTGCCTTGGTGGTCTTTGTTTTATACATTCACCTTAAAGATCGA
AATACGGAGACTGAAGAACAACAAACAAGTTGatggatgaaaattttttt
ttt

Run BLAST on NCBI

protein sequence of TCONS_00007697-protein

>TCONS_00007697-protein ID=TCONS_00007697-protein|Name=TCONS_00007697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
TDTPIRKDVVIGRSFVLQCPKLSYNFPQNILWGTVPQNGKPILLADTKER
YRMSNGDLLFTHVTEQDLKDVNDLIGGISCINYHNGLYVQSVKFNLKRVT
AFDDNFAPSFLESISSTNDAYEGEKFKFKCSAGGRPTPKVTWFGPRGEID
NLNPDYQISLPENILTIPAAYPRLAGNYRCVVKNSQGTRQSEGKLVIKSF
PKWKKKLKDETVDENSQITLKVDAIGSGILAYDWFKNGQPIDRTNSTYKV
NGNSLTVKNIRKSDFGFIQAFVNNGQQEISSTAFLNVKGAEIPSARKLKK
EKKFYEFYILIGIASIILLALVVFVLYIHLKDRNTETEEQQTS

Run BLAST on NCBI

transcript from alignment at sc0000079:104724..108101+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007697 ID=TCONS_00007697|Name=TCONS_00007697|organism=Clytia hemisphaerica|type=transcript|length=3378bp|location=Sequence derived from alignment at sc0000079:104724..108101+ (Clytia hemisphaerica)
CACAGATACTCCAATTCGAAAAGATGTGGTCATTGGTCGAAGTTTTGTGT
TACAATGTCCAAAGCTTTCATATAATTTccctcaaaatattttatggGGT
ACAGTTCCGCAAAACGGGAAACCTATTTTGTTGGCGGATACCAAAGAAAG
ATACCGGATGTCGAACGGAGATCTTTTGTTTACTCACGTGACTGAACAAG
ATTTAAAAGATGTTAATGATTTGATTGGTGGAATTTCTTGCATAAATTAT
CATAATGGATTATACGTCCAATCAGTAAAATTCAATTTGAAACGAGTGAC
AGGTATTtctaataattatttttaggtCCAATTACGTCCAATTTTACTTT
GTTCTGGGTTTTATTTAGAGGTATAAAAGCAGGTTAAAAAAGTTCACTCA
GGCTAAAAACAGTACTGGGGAATGCTCTTCACCATGGCCCAAATCTCATC
TTTTAAGAGTTAAAGGATCCAAATCGATAAATACAAGACTTGTTATAGCT
CAAGCAGCATACCCCTTCTGTAAAGGTCAATGCATTAGTCGCAATTGCTA
GAGATAATATACCgttaaaatttaccaaaatgtttttgatttcaGCATTC
GATGATAACTTCGCACCCAGTTTTTTGGAAAGCATTTCTAGCACCAATGA
TGCTTACGAGGGAGAAAAGTTCAAGTTTAAATGTTCTGCTGGTGGAAGGT
AAAGGTTTATTCAGTCTTTCTGCAGCATCTCACTAAAGGTTCTTCATCAT
TCTAAAGTGTAACTTCATACTTGTATGATTGGGAATCATCAGACATGCCT
GTCCCCGCCATTATGTGTTGTTGAACCGCCCAACTTTACGCCCATCTGAA
AGCTGAAGTGTCTGAAAACAAAGCCTTATATAGTGCAATGCAGATCAGGA
ATTACAAACTGGACATTTTCAAGCTTTCAGAGGAcgccaaaattattttt
ctcttatttacCTCCCAAAGTCATGTAAAAACCACAATGCTACtgtaaaa
tatgataaaatagttttctaaataattttttcaattggatgcaggaaaaa
tcaaattttcatccccTCAAGTACAATCAATTTCTTTCCCTCTAGACCGA
CTCCTAAAGTCACATGGTTTGGTCCACGTGGTGAGATTGACAACTTGAAC
CCAGACTACCAAATTTCACTTCCCGAGAATATTCTAACTATTCCAGCTGC
TTATCCAAGATTAGCTGGCAATTACCGTTGTGTTGTAAAAAATTCTCAAG
GCACAAGACAATCAGAAGGGAAACTTGTGATCAAATGTAAGACTTTTTAt
acgattttttgcaaaaacaaaacagttgACGCTCCCTAACTCTAACCCGA
CGTTCTATTATTTGATATATTAAAAATCAACCATTAACAAGGCTCATTAT
TGGTCTGAGAGATCTGCTATGAAATTCANGACAATCAACCGTTAACAAGG
CTTATTATTGGTCTGAGAGATCTGAtttgaaattaaatgtttttcatttt
agttAATAGCCCGCTTTTGGATAGACTTTACCCTAGATAAATCATACCTG
GAAAATATCTTAGCACCATCGCAACCTTGTTTCGACGTTCATTTAGAATC
GTTAATCGTCGTTGcatcacgttttttttataagaacatccaaaattttt
gaagccttcggatgttcttaactttttaagtttcaagcctaaaagtgttc
ttaacatattttcGCCATTtgttgagtatttttgtccattttcttaacaa
atcgggtgttttagagtttacgaagccttaaaatgttcttaacatgctct
taacattttggccatcgaatccGTCTGTTCTTTTATAATTCTTTtgtaat
ttgtttttattttgtatggggcccccccagcggtttgcgtgattgcgtga
atgggcatttttggttgcgtgaatgcgtgaaaaatgaaaaaaaaatgcgt
gaatgcgtgaattgaaaaaacttgcgtgaacgtgaaaatgtacCTTTTTG
ATTGCGCGGATGCGtaaatctgggctattttgtgcgtgaatacgtgaatt
tccccttttttccaccgattatgtacagttttcccgattttccaatgttt
ccccgatttctcaAACAATTttccgatttctgaaaaattgggttattgcg
tgaaactcaaggaaaatttgcgtgaatgcgtgaatttcgaaaaaaaattg
cgtgattgcgtgaattgagggtccgctgggggggggggctcatNcgtgaa
tgcgtgaatttcgaaaaaaaattgcgtgattgcgtgaattgagggtccgc
tggggggggcctctTGTATAGCTATATACTGTCAAACTCATCCAGTTTAT
GTATTTTCAGCTTTCccaaaatggaagaaaaaattaaaggaCGAGACAGT
TGATGAAAATTCTCAAATCACTTTAAAAGTGGATGCTATTGGATCAGGAA
TACTGGCATATGATTGGTTCAAAAATGGGCAACCTATTGACCGTACCAAG
TAAGAACTGCTTGCATTATAATCACAGCAATCCCACAATCCCAAGGTCCC
AAAAAACGTCTCCCCGCCTATTAATTTTCGAAACCTTATTAAAACCCTGC
CTGTTaattattttagaaaatatttcaagCTTATCGCAAGCTGAATTGCT
CTAGATAGCCTGGTTTTAGCttataattaccttattttggaAGGGGGGGG
GTCTGGACTGGCTTCTCTAATACTATGCCGAATATCAGATACAAATGATT
ATAGTTCTAACCACTCGTATATTTTTTTCCAGTTCAACGTACAAGGTCAA
TGGAAACTCACTTACCGTCAAGAATATTCGAAAATCTGATTTTGGTTTCA
TTCAAGCTTTTGTAAACAATGGACAACAAGAAATTTCTTCCACTGCTTTC
TTAAATGTCAAGGGTAAGTAAAGCAGTTGTACCGTCGCGTAAGATTTACA
TTCCCACACTAAGACTTCACTTTTTTAGCGGAGAAATACCAGAACTCCTG
GTAGTTATaaaagtaaacacaagattttccgttgtttttatttttctctt
gacTGACTGAAGACGACGGTAAATTGCCATTTTTACAATCCTCGATTTTT
GGGTTCTTCCTAGTCGTTAAACATCCTCAAAAGTGCAGATACCCAAACTC
GCTAgtaaaactaataaaatgttTCCTTACTACAATCTCAGGAGCAGAAA
TCCCGTCAGCAAGGAAACTGAAGAAAGAGAAGAAGTTCTATGAATTCTAT
ATTTTGATCGGAATAGCGAGTATCATTCTACTTGCCTTGGTGGTCTTTGT
TTTATACATTCACCTTAAAGATCGAAATACGGAGACTGAAGAACAACAAA
CAAGTTGatggatgaaaatttttttttt

Coding sequence (CDS) from alignment at sc0000079:104724..108101+

>TCONS_00007697 ID=TCONS_00007697|Name=TCONS_00007697|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at sc0000079:104724..108101+ (Clytia hemisphaerica)
ACAGATACTCCAATTCGAAAAGATGTGGTCATTGGTCGAAGTTTTGTGTT
ACAATGTCCAAAGCTTTCATATAATTTccctcaaaatattttatggGGTA
CAGTTCCGCAAAACGGGAAACCTATTTTGTTGGCGGATACCAAAGAAAGA
TACCGGATGTCGAACGGAGATCTTTTGTTTACTCACGTGACTGAACAAGA
TTTAAAAGATGTTAATGATTTGATTGGTGGAATTTCTTGCATAAATTATC
ATAATGGATTATACGTCCAATCAGTAAAATTCAATTTGAAACGAGTGACA
GCATTCGATGATAACTTCGCACCCAGTTTTTTGGAAAGCATTTCTAGCAC
CAATGATGCTTACGAGGGAGAAAAGTTCAAGTTTAAATGTTCTGCTGGTG
GAAGACCGACTCCTAAAGTCACATGGTTTGGTCCACGTGGTGAGATTGAC
AACTTGAACCCAGACTACCAAATTTCACTTCCCGAGAATATTCTAACTAT
TCCAGCTGCTTATCCAAGATTAGCTGGCAATTACCGTTGTGTTGTAAAAA
ATTCTCAAGGCACAAGACAATCAGAAGGGAAACTTGTGATCAAATCTTTC
ccaaaatggaagaaaaaattaaaggaCGAGACAGTTGATGAAAATTCTCA
AATCACTTTAAAAGTGGATGCTATTGGATCAGGAATACTGGCATATGATT
GGTTCAAAAATGGGCAACCTATTGACCGTACCAATTCAACGTACAAGGTC
AATGGAAACTCACTTACCGTCAAGAATATTCGAAAATCTGATTTTGGTTT
CATTCAAGCTTTTGTAAACAATGGACAACAAGAAATTTCTTCCACTGCTT
TCTTAAATGTCAAGGGAGCAGAAATCCCGTCAGCAAGGAAACTGAAGAAA
GAGAAGAAGTTCTATGAATTCTATATTTTGATCGGAATAGCGAGTATCAT
TCTACTTGCCTTGGTGGTCTTTGTTTTATACATTCACCTTAAAGATCGAA
ATACGGAGACTGAAGAACAACAAACAAGTTGa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004364	XLOC_004364	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00007697-protein	TCONS_00007697-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000079	supercontig	sc0000079:104724..108101 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0420352	0.163964	0.0951889	0	0.0566869	0.134384	0	0	0	0.0877524	0	0	11.2944	3.42588	0.190952	0.0512302	0	0.0646871	0.0893688	0.187036	0	0	0.0481968	0.0438179	0	0	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003599	Ig_sub
IPR003598	Ig_sub2
IPR013783	Ig-like_fold
IPR013098	Ig_I-set
IPR007110	Ig-like_dom

Blast

[Close]

BLAST of TCONS_00007697 vs. Swiss-Prot (Human)
Match: CNTN5 (Contactin-5 OS=Homo sapiens GN=CNTN5 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.617e-19
Identity = 53/171 (30.99%), Postives = 79/171 (46.20%), Query Frame = 2

Query:  350 TNDAYEGEKFKFKCSAGGRPTPKVTWFGPRGEIDNLNPDYQISLPENILTIPAAYPRLAGNYRCVVKNSQGTRQSEGKLVIKSFPKWKKKLKDETVDENSQITLKVDAIGSGILAYDWFKNGQPIDRTNSTYKVNGNSLTVKNIRKSDFGFIQAFVNNGQQEISSTAFLNV 862
            T  A +G   K +C A G P P +TW    G I +     ++   + +L IP      AG Y C  +NS+G     G+L + ++P W +KL D  +D  S +  +  A G     Y W KNG P+   +    VNG  L + N+ +SD G  Q    N    I ++A L +
Sbjct:  309 TVTAAKGTTVKMECFALGNPVPTITWMKVNGYIPS---KARLRKSQAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHWVEKLNDTQLDSGSPLRWECKATGKPRPTYRWLKNGVPLSPQSRVEMVNG-VLMIHNVNQSDAGMYQCLAENKYGAIYASAELKI 475

The following BLAST results are available for this feature:

BLAST of TCONS_00007697 vs. Swiss-Prot (Human)

BLAST of TCONS_00007697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CNTN5	7.617e-19	30.99	Contactin-5 OS=Homo sapiens GN=CNTN5 PE=1 SV=2	[more]

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TCONS_00007697 (transcript) - C. hemisphaerica