TCONS_00007698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007698
Unique NameTCONS_00007698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007698 ID=TCONS_00007698|Name=TCONS_00007698|organism=Clytia hemisphaerica|type=transcript|length=1322bp
cttcacaggaaaattaaatgaaaattttagctcttaattaaaaataagtt
atgaaatgtttattttgtcACCCCTTGTCTACTCCAAACATGAGTTAACT
ATAAAATGCCTTCATTTAAACAAAAATCACAGTTACAACCAAATCATACG
CGATGAAGACTTTAATCATTTTAGCAGCAGTGATAGTTGCCACCTTAGGG
TGCCGAGATCTAAGCACCTACTGTCAACGTTGGGCAAGATATTGCAGAAC
AAATTCATACGTTCAAAAAAAATGCCCGAAAACCTGCAACCGATGCCCCG
CACCGCCAACCAGACAACCAGtatGTACAGATAACCATAGTAGCTGCTCA
CGATGGGCAATCATTTGCAAAACCAATGATTATGTAAAAAAACAGTGCCG
AAGAACTTGCAACTTATGCGGTGGACCAAACACCCCGGCTCCACCAACCA
ACCCACCTAAGACAAACGCCCCGGCAACAAACCCACCTAAGACAAACGCC
CCAGCAACAAACCCACCTAGAACAAACGCTCCACCAACAAGTGCACCAGG
AACCTACCCACCCCAAGGATCATGTGGACGTCCACAAGTTGCAATGTCCA
GAGTTGTCGGTGGAAAAGATGCAAAAGCTCATTCATGGCCATGGCAAATC
GGACTTCACCGCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAACAG
CCGATGGGTTGTTACTGCTGCTCATTGTGTACATCGAAGAAGTGCGAGTG
ACTTCAAAGTCAAATTAGGAGACCACGATAGGCGAAGAAACGAAGGTGAA
CAATTCATCCAAGTCTCAAAAATCATCACTCATCAAGGTTATGGAAGATT
GAACAATGATATTGCTTTGTTACAATTGGCTACTCCAGCAAAATTCGGAC
GAAATGTTCAACCAGTCTGCTTACCCAACCAAGGAGATGCTCCACAAGTT
GGTAGCAAGTGTTACATTACGGgaTGGGGGAAAATAAGACATCCTGGTTA
CTCACACACCATCCTTCAACAACTTGCTTTGACCATCCAAGACAAATCTA
CTTGTTCAAGAATGAATGGAAAATATGCACCAATCACTGACGCTATGCTT
TGTGCTGCTAACACTGATGTCTCTGCCAATCAATCTGGTTGCCATGGTGA
TTCAGGTGGTCCATTTGTTTGTCAAAACAGTAATGGTTCATGGACATTAC
ATGGAGCTGTTAGCTGGGGATCACCAAGATGTGACATCAAAGATGCTTTC
ACTGTCTTTGCCAGAGTTGGACAATTTAGAAACTGGATCGAACAAAACAT
GAAATGAAATGTTAAATAGtat
Run BLAST on NCBI

protein sequence of TCONS_00007698-protein

>TCONS_00007698-protein ID=TCONS_00007698-protein|Name=TCONS_00007698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MKTLIILAAVIVATLGCRDLSTYCQRWARYCRTNSYVQKKCPKTCNRCPA
PPTRQPVCTDNHSSCSRWAIICKTNDYVKKQCRRTCNLCGGPNTPAPPTN
PPKTNAPATNPPKTNAPATNPPRTNAPPTSAPGTYPPQGSCGRPQVAMSR
VVGGKDAKAHSWPWQIGLHRNGGFMCGGSIINSRWVVTAAHCVHRRSASD
FKVKLGDHDRRRNEGEQFIQVSKIITHQGYGRLNNDIALLQLATPAKFGR
NVQPVCLPNQGDAPQVGSKCYITGWGKIRHPGYSHTILQQLALTIQDKST
CSRMNGKYAPITDAMLCAANTDVSANQSGCHGDSGGPFVCQNSNGSWTLH
GAVSWGSPRCDIKDAFTVFARVGQFRNWIEQNMK
Run BLAST on NCBI

transcript from alignment at sc0000079:131163..142337+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007698 ID=TCONS_00007698|Name=TCONS_00007698|organism=Clytia hemisphaerica|type=transcript|length=11175bp|location=Sequence derived from alignment at sc0000079:131163..142337+ (Clytia hemisphaerica)
cttcacaggaaaattaaatgaaaattttagctcttaattaaaaataagtt
atgaaatgtttattttgtcACCCCTTGTCTACTCCAAACATGAGTTAACT
ATAAAATGCCTTCATTTAAACAAAAATCACAGTTACAACCAAATCATACG
CGATGAAGACTTTAATCATTTTAGCAGCAGTGATAGTTGCCACCTTAGGT
AAGATCTCGTGCTTAGCGTATTATCATCTAAACGGGGAAAAAGTTGGCAT
CTAACTTTATCAAATCGATTTTAGCTTAATTTTTGTATGTATGATGCCAG
TAATAATACACCTATTCATGACacgcaccattgcaatgtcttgtTTGTCT
GCCTTGGTTGTAAGTGATGTAAAATCAGTCATTTTCAACAAATCAGCAAA
GATTGGCAGATGTTTTACTTTCTCACTTAAATTGTAATTTTAAATGACAT
GAACTTAATTCTTTATGATTCACTTTAGGGTGCCGAGATCTAAGCACCTA
CTGTCAACGTTGGGCAAGATATTGCAGAACAAATTCATACGTTCAAAAAA
AATGCCCGAAAACCTGCAACCGATGCCCCGCACCGCCAACCAGACAACCA
GGTAATTAAATTAGTTGGGTTTGGAAAAAGCAGGGTGTTTGGAAAAAGTG
GGGTGGGTGGAAAAagtctcaaaacttaataagcggggggggggNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggggtt
ggtatagaaatgtcctgggtggaaaatctttgaaaaggaggctaatacag
cagaattaggggaACATGGGGAactttcataaaattttttgaaagattaa
ttagcgggggatgcttattaggtacctgagagtaggTTAAAACATGAAAC
CATTTCAAAGAACGTGAATTTCCATTTTGATAATCGATGTACTACTGATG
GTTCAGAATATCATCATTGTTTTTTATGTATCGCTTCCGATTACCCGTCT
ATGAGCTTTATGAGTCATGAAACGCTAACACACTCCTGTCTCAGATAGGC
TGATTGTATATCACTACAGATTTGTGCCTCAAGTAAATTcgtcaaattaa
atccccgtcAAAATTTCGACATATCCtcgccaaaaaaaatttctctttca
ccaacctttttaaaattttaagaacaaatatcctacaatttatATCTAGA
AATAATTCTTGGaagtaaaatatattacaaaaattaatcgatacatcttt
tttatttccgTAATACTTATCTTCGTAGCCTATCTTATGTTcaataaatc
ttcaattttttcttttcaaaagtatGTACAGATAACCATAGTAGCTGCTC
ACGATGGGCAATCATTTGCAAAACCAATGATTATGTAAAAAAACAGTGCC
GAAGAACTTGCAACTTATGCGGTGGACCAAACACCCCGGCTCCACCAACC
AACCCACCTAAGACAAACGCCCCGGCAACAAACCCACCTAAGACAAACGC
CCCAGCAACAAACCCACCTAGAACAAACGCTCCACCAACAAGTGCACCAG
GAACCTACCCACCCCAAGGATCATGTGGACGTCCACAAGTTGCAATGTCC
AGAGTTGTCGGTGGAAAAGATGCAAAAGCTCATTCATGGCCATGGCAAAT
CGGACTTCACCGCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAACA
GCCGATGGGTTGTTACTGCTGCTCATTGTGTACATCGAAGAAGTGCTCGT
GACTTCAAAGTCAAATTAGGTAAAAGCTTATCGAAAAACAGTTTATTTTG
ATATTGAGAACCCTTTTGCTTGTAGGAAAAGGTACAGTGTTTTCGAGCGT
gcaacattttctgaaaaatgtgaaaaattttctttaaatcaatttgaaac
gtgtatacacgtcaCTCGGGTTTGAAGGGTTAAAGCTAGATTTGAAATAG
CATTACATCTCTATCGAAATTGAAGTTctgtaaaaattgttttcaattgT
TCAGGTGACCACGATAGACGAAGAAGTGAAGGTGAACAATTCATCCAAGT
CTCCAAAATCATCACTCATCAAGGTTACCAAAACAGCAGATTGAACAATG
ATATTGCTTTGTTACAATTGGCTACTCCAGCTAAATTCGGACGCAATGTT
CAACCTGTCTGTTTACCAAACCAAGGAGATTCTCCACAAGTTGGTAGCAA
ATGTTACATTACAGGTAGGACCAATACAGATGATATCTATATAACAAAGG
CGAGactaaaataaaatctaaactTCGCTCTCCCCagtgataatattgaa
agtacAGTAAAAAAAGAAAGTCCTTTGGTTCGTAGCCAAATACAGTTGAG
CCTCAAAAACTTGAACAGCTCCCTTAACTCGAACTTAGCTggccccttca
gttaacaatgccctaAAAAACCTTGCCATGATTCGAAGAAATTCCCCCCC
CCCTTGCGCGTGGTTGTGTTACAGAGACTCAACTAAAGTAACATTGCTTT
TGTTTGATGGCTGCAAAAGAGAGTTTTCCGGTAATTTCAGCAATGTTCAG
TGTTTCATTTTAACTTATTACTCAGGATTACGCCAATATCTATAATATTG
ACTCTATCAGTGATTAATATCCATAATCATTATATACATCAACAGCTGTT
GAAAGTCTACCAATTACATTATCATTTTTTAAGGATGGGGAAAAATCAGA
CATCCAGGGTACTCACACACCATCCTTCAACAACTTGCTATGAAAATCCA
AAGCAAATCTACTTGTTCAAGACAGAATGCAAAATATGCTCCAATCACCG
ATCAAATGTTGTGCGCTGCCAACACTGATGTCTCTGCCAATCAATCTGGT
TGCCATGGTGATTCAGGTGGTCCATTCGTTTGTCAAAACAGTAATGGTTC
ATGGACATTACATGGAGCTGTCAGCTGGGGATCACCAAGATGTGACATCA
AAGATGCTTTCACTGTCTTTGCCAGAGTTGGACAATTTAGAAACTGGATC
GAACAAAACATGAAGTAAACCAGCCAATGATATTGAACGACTTTTTCTAG
GATTTTTTTAGAGTCACAATATGAGAGCATTATTGTTTGAATAAATCCTA
ATTAAAAAGATATGTCTAAATACTATTCTAAAATTTAGTGTGTGAAAAAT
GATGTGCTTCATTCTGACTAGATGTACGCTTTTATACCAATTAAATTTTG
AgtcaggctgggctgttctaAATGTTATGAATTTTTCAGCCTCATGGTCT
CAATTGGCCttatgaaaaaagtgtttacgTAAATTTACTAATATTTTTAA
CTTGTAAgctttaaatggaaaaaaaaggaaaactacCAATATTTTATTAA
GGATTTTAACTACCAGTTGCTTTTTGGCCCAGCATTTGGCCTTTCATATT
TGCCCAGTTCGTGTTGTATGTCCGTCCTTTCACTTTCATAATTCAAGATT
ATTCTGGAAGAAATGGTGCCTTGCAACATTGCGAGCAAATATTCGACTGT
TGGTCCTGACTTATTTTTTTACCTATGATCTGGAATTTCTGAGCCTTTAG
GAAGTGTCTAAGTTCGACTGAGAAGTCAATATTGGAGTTCAACTTCGATA
TCTTGAAATTTGACATAGTTGAGTCCCGAGTGGAATTCGAACCCACACAT
GAAACGCACCCAAATCAGGCAGTAGAACGTCAAATTATAAGGTGTCAATT
TTATATGGgatgaagtaaaaaaaaataatagcccatgtattcgttttttt
ttccgGCTAGTTGAAATATGGGCGTGGTTATGAAGTATTTGAGTTAAGTT
ATTGACTTTATTTCGTGAGAATGATGcaattttaaagattatttataCTT
CTCCAAGTAAATATTCCTTATTTGTATGTTTTCACAGCTTTGGATGTATa
ttacaaaactaaaaaaattgcaaagatTTGTTTTGGTTAGCTGTCGTATA
TACATATACTTCGTTCTCCTAATagttgatttttaatttttactgTTGAA
CTTGTTTTCaagatgaaaatgtttttaattttaacaGCAGTATTTTTAGC
TGCGTTAGGTAAAGCTAGAACAAGAAGCTTTGCTCAAACAACACTAAACT
CACCAAGTACAAATATTCCAGGAACAAACCTACCAAAAGGATCATGTGGA
CGTCCACAAGTTGCAATGACAAGAATTATCGGAGGACAAGACGCAAAGGC
TTATTCATGGCCATGGCAAATCGGACTTCACCGTAACGGCCGATTTATAT
GTGGAGGATCAATAATCAATAGCCGATGGGTTGTTACTGCTGCTCATTGT
GTTTTGTATAGATCTGCTCATGAATTCAAGGTCAAATTAGGTAAGTCGTT
TGTTGTTGCGTTGGGGCGGGGAAGGGCGCTCTAATACACCCTCTTCTCGc
aaacccggtaggatttttttcagccagtggggatgacaataacggactaa
aactcgaaGGGGATTTATATTCCCATATTTCTTATGGCTAGGGATtcata
ttcttttgttttcaagtcaggaGATTCCgggtggggatgggaaaaatagt
ataATGTTTTGCAGTGAGCATTGGTTTATTTAGTTATTTTCGGTAGGAAA
GAAATCGGAGTATAATTTTAAACCAGGAAGGacaaattttggccaatttt
tcagtgggggtctgtgagaaggggttatTTAATCCTATGAAGTAGGGTAA
AGAGTTGTTTCATTATTCCAGGAGACCACAACAGAAATGTAAGCGAAGGT
GAACAATTCATCCAAGTCTCCAAATTTATTATccacaaaaattacaaaaa
ctcGAACAATGATATTGCTTTGTTACAATTGGCACAACCAGCAAGATTCG
GAAAAAATGTTCAACCAGTCTGTTTACCAAACCAAGGAGATGCACCACAA
GTTGGCAGCAAATGTTACATCACAGGTGAGCctttttttaatagattttt
taaTCAATCCATCAAACAAGATATCAGCACGCAATACTGCTAAGTCCCTA
CAATGAGTATGATATGGCcgagttttcaaaaatcaaccTCTGACGACCAA
GTGAGGAATATTATCATGTTAATaactagcagactgtatcagtaacATGt
ttactacagggtgtcccaaaaaaagtatcgagtcatACTATTCTATAGAA
AGAtggttcttgtgtgtgtttctcTAAATTCGTAATGTTTATTCTCatat
taatttcaatttcatgagacattttttatgaataacttttacaaataaat
atttctcaataactttaacgtcatgaaaattgggtatatattttcttaga
TTTTGTTAATTAAACACATGCAACAACcatctactcagaatcatgttcgg
aATCGATactttttccggacaccctgtattaaCAAATTCCCCATAAAACC
TTCAAGCgcgtaattgaaatgagtttctttcaaaataaatcttttaattg
attcccaaatgtatgaTAACAACAATTACTAAATTATTGATCATGGTATt
gttacttcaatggaatcgaaataatagacaggtCTTTGGGTGTAACAATG
AACTTAAATTACACCCTTAATCCAAGATTCAGGATTGGCGTCATGGTTAA
TTTTCTCTGCGCTAATTGCGCGCTTAATAAAATTGCTATTTACCGTCACA
GGTCGTAATATGGGTCAGCATGTGCATTTTCACGTATTTGTGTTGCAAGT
GAATGGGAACTAAAATTTGttctaatagacgatatcggatttagataaat
gcaatgcattctggtttctagggactctcaaaggaattataatctattat
aattgatctaatataattcctttgagagtccctagaaaccagaatgcatt
gcatttatctaaacccgatatcgtctattgcggAAAATTCGAGTTTTTAG
AGACTTGAGGATTTAATTCATGAAGGGGCCAGAAATATATCACAGCTAAG
GAGACATTCCATTTACAGACTAAATTAAGGAAGATTAAGGAAACTCTATT
GTATAAGTAAATGAATCTCATTTAATTTAAGGATGGGGAAAAACTAAACA
CCCGGGCAACTCACACATCATCCTTCAACAACTTGCATTGAAAGTACTTA
CCAAATCTGCTTGTTCCCAGAGAAATGGAAAATATCATCCAGTCACTGAT
CAAATGCTTTGCGCTGCCAACACTGACAATCCGGCAAATCAATCCAGTTG
TCATGGTGATTCAGGTGGTCCATTTGTTTGTCAAAATGGCGATGGCTCAT
GGACATTACAAGGTGTTGTCAGCTGGGGATCACCAAGATGTGACAAGAAT
GATGCTTTCACTGTCTTTGTAAGAGTTGGACAGCTTAGAAGCTGGATTAA
TCAGAATATGAAATGAACGAGCATAATAATTTTACTTATCATTAGGACTT
TTTATGCTATCTCTAACAATGAGTAAACAGATAACCCAACCTACTCGAAA
ACAGCATTTGgtctttttctatttctattgcGCCACAATGTACACCCTGA
ACCCTATTCTCACTATTCTATCGGAAGAATTTCTGCAAATATATGACTAA
AACCTTCCCTAAGCACTTTTTGTGGGAAGGTGAATCAAATATAAtcgaaa
gtttttgaaatgcttcttataaaattggttctaataaaaaaatttttgca
attcaaTCCAAATTTGTTCGTTAGTTCTAATACTAAAATCTAAATCTTCA
ACTGGCATTTaacaatttgatattttaatcaAGGAAAGTCAACGTGCTCA
AAATGTCTGGACAtacttttttgctattttttaatgttttttttgagtca
aaaagtgataaaatctGATTTCAGTTTCTTCATTTTACTCCTGTGTCTAA
AAAGTCTTCGACTGAATACTATAACAGGAGTATTTATTATAATACAGTTG
TTCAAATATGGCATTTCTACAGaataaaattattaaataaTCAACTATTG
CAGAAAAGTATGGGAAAACCCAGGTGCACTCcattaattaaaatttgaaa
cattttggtGGGTAAAGTTAGAATTATTGAATTAAACTTGTAAAATTGtt
accaaaaaaattattaacattttaaattttatcatttcatACAAGGGTAT
TGTTTAGACAGCTTGAGTAAATTTCATCTTTTAATTATATGGTATGCAAA
ATGCGTGTCAATGGAGTACCGATGCAAAGGAGGTGAAACAATCAAGTTTT
TTATTTACTGAACCTTTGAAAGGTTTTCCTATATAAATACCCCTGTTTTG
TGTGAAATGTCACATTCAAAACTCGTCAGGATGAAGACTTTGATCGTTTT
AGCAGCCTTGATTGTGGCCACTTTGGGTAAGTCATCTGTTCCAATTAATT
CATGAAAACGAAATATCTTAAAGTGAAGGAGGaatttttggtggaaagaa
aatattttccgccaatccgccaaatttaaaattattttttcatgaattcc
cCTAAGAGAGATTTGCTTTTTCGATAATGGTTTtggtaaaaaatataatt
taaccctattcggcctagggggggggggctgtccctgttcggaggtcaaa
ttattggtaatagctcctgaaataatagagcttttgccatgaaatcttct
gtaaattcctaacttttattcagcttaaaataaaaaaaaatttgacacct
aaaaatttcaCACCTTGaacatgatgacatttctgacagtaaggtgtcac
aaaaattgacacttttacaataaaaatttattttttatgtcaaatatatc
ctttaaaccgtaatttattgaatatttaagataaaataagcattctaaac
tcaggcaacttttttcttaagcctttgaaaatacaatagctatttataat
aacaaaggaaatgagttttgtcaaaagttaccttatgtgacaaggatctt
gtgtgccaaattcatccaaaaagaaccattagatcgaaagttaaGTACAG
GAAAAATgaccaaattaaatttccgccaAAATAGTTTCCTAAAAGGTTGT
TGATACCGATTTTGTCAACTAAATTGCATCTTGACCATCGGAACATTAAA
CAATAGAtattaatacaccttttctacCGTAGCTGTCTATTCACCGCGTG
GacatttttttgtccattttaccacCTTAAAACTGCCCCAGTCTATTTTT
CGCaactaaagacaatagaaaaaaatgtaaaaaaaggattggatcgagtt
tggggtggtaaattaaatattaAAGTTGCACGCGCCTGGCCgcacgacta
cggtcgaaaaggtgtattaagaATAATGAGTTTGCCTATGGTGTACTTAC
ATATACAAATTTTAGCAACATTCTATTTCAATATTTAGCTTGCACAAATA
AATCTACTTTTTGTGATCAATACGATAAAGCCATTTGTCATCATGATTGG
ATGAAAGTCAACTGCCAAAAGTTGTGTAATCTATGTGGTCCATCTACACA
AGCTCCAACACAAGCACCAGGTAAAATGATCAGAATATATCCATAATTAA
CGGAATTTTTGAGACTCCTTATATCAGTGTTCTAAATGTTacaaaatttt
ttatataaaatcaTTTCTGCTCAAGTAAAATTCCATAGTATCCGTTTGTT
GGAATGATTTTCGAATGTCACACTCATTGATGATTAAATTTCAGGAGGAT
GCGTCGACAAGAATACAAATTGTCCACATTGGGCATCACATTGCAAAACC
AATGCATACGTGAAAGAAAACTGCAAGAAAAGTTGTAACATGTGTGGTCC
AAGTACCCCTGCCCCACCAACAAGTGCACCAGGAACCTACCCACCCCAAG
GATCATGTGGACGTCCACAAGTTGCAATGTCCAGAGTTGTCGGTGGAAAA
GATGCAAAAGCTCATTCATGGCCATGGCAAATCGGACTTCACCGCAACGG
TGGATTTATGTGCGGAGGTTCAATCATCAACAGCCGATGGGTTGTTACTG
CTGCTCATTGTGTACATCGAAGAAGTGCGAGTGACTTCAAAGTCAAATTA
GGTAATCAGTGCTAGTTCCTATTGTCATTTTCCTTTTATCTGTCCTTGAG
TATATGTATGGCTCATTGACCATCGAGTTACACATTTTTATTTGTAAGCA
TATCTTAACTCATATCATGGAAAAACTTAAGTAAGCATTGTCTAAGCATA
TACTGAACCTCAAGTTAACAAAATTATAAAGCCCTTAATTTCCTTAAATC
CAAAAAACATGCTTATAAAATGCAACTTATTATCATCACATTGACTTAAA
ATAAGCATATGCAAGAAACGTAGGCTCAAAATATCACACTATGCTTATAA
GAAACCGTGTAGTATATATTAGTAGAATAAAAGACTTTTTACTCAAATAT
TCAGGAGACCACGATAGGCGAAGAAACGAAGGTGAACAATTCATCCAAGT
CTCAAAAATCATCACTCATCAAGGTTATGGAAGATTGAACAATGATATTG
CTTTGTTACAATTGGCTACTCCAGCAAAATTCGGACGAAATGTTCAACCA
GTCTGCTTACCCAACCAAGGAGATGCTCCACAAGTTGGTAGCAAGTGTTA
CATTACGGGTAGGATAGCACATTGTTTATATTTTCTGTATGTTATCATTC
AATATTGATTGGAAATGAGACAAAACTAAAAGTACCAGTTTCTTATAGAC
AAcaaataaattattaaaaattacaaGTAAAATTTCCCACCTTGATCGCC
TCGTAAGAACTTATAATTATGAAAGGTTAATTCAAATCCAATTGTGAGTT
AATAAATTATTTTCTGGTATTCTGGTTCTGACTGTCCATCTTTTGCTCTT
CCAATTTTGATTGTTAATTACAATAGGCAAGAAGTTGGTTGGCTCAAGTA
AAGGCTTTGCTTTCTTTTGGCGTCTCAAGTAAAGGCTTTgctcttttttg
acgtcaataaaatttcttcttttaggaTGGGGGAAAATAAGACATCCTGG
TTACTCACACACCATCCTTCAACAACTTGCTTTGACCATCCAAGACAAAT
CTACTTGTTCAAGAATGAATGGAAAATATGCACCAATCACTGACGCTATG
CTTTGTGCTGCTAACACTGATGTCTCTGCCAATCAATCTGGTTGCCATGG
TGATTCAGGTGGTCCATTTGTTTGTCAAAACAGTAATGGTTCATGGACAT
TACATGGAGCTGTTAGCTGGGGATCACCAAGATGTGACATCAAAGATGCT
TTCACTGTCTTTGCCAGAGTTGGACAATTTAGAAACTGGATCGAACAAAA
CATGAAATGAAATGTTAAATAGtat

Coding sequence (CDS) from alignment at sc0000079:131163..142337+

>TCONS_00007698 ID=TCONS_00007698|Name=TCONS_00007698|organism=Clytia hemisphaerica|type=CDS|length=1155bp|location=Sequence derived from alignment at sc0000079:131163..142337+ (Clytia hemisphaerica)
ATGAAGACTTTAATCATTTTAGCAGCAGTGATAGTTGCCACCTTAGGGTG
CCGAGATCTAAGCACCTACTGTCAACGTTGGGCAAGATATTGCAGAACAA
ATTCATACGTTCAAAAAAAATGCCCGAAAACCTGCAACCGATGCCCCGCA
CCGCCAACCAGACAACCAGtatGTACAGATAACCATAGTAGCTGCTCACG
ATGGGCAATCATTTGCAAAACCAATGATTATGTAAAAAAACAGTGCCGAA
GAACTTGCAACTTATGCGGTGGACCAAACACCCCGGCTCCACCAACCAAC
CCACCTAAGACAAACGCCCCGGCAACAAACCCACCTAAGACAAACGCCCC
AGCAACAAACCCACCTAGAACAAACGCTCCACCAACAAGTGCACCAGGAA
CCTACCCACCCCAAGGATCATGTGGACGTCCACAAGTTGCAATGTCCAGA
GTTGTCGGTGGAAAAGATGCAAAAGCTCATTCATGGCCATGGCAAATCGG
ACTTCACCGCAACGGTGGATTTATGTGTGGAGGTTCAATCATCAACAGCC
GATGGGTTGTTACTGCTGCTCATTGTGTACATCGAAGAAGTGCGAGTGAC
TTCAAAGTCAAATTAGGAGACCACGATAGGCGAAGAAACGAAGGTGAACA
ATTCATCCAAGTCTCAAAAATCATCACTCATCAAGGTTATGGAAGATTGA
ACAATGATATTGCTTTGTTACAATTGGCTACTCCAGCAAAATTCGGACGA
AATGTTCAACCAGTCTGCTTACCCAACCAAGGAGATGCTCCACAAGTTGG
TAGCAAGTGTTACATTACGGgaTGGGGGAAAATAAGACATCCTGGTTACT
CACACACCATCCTTCAACAACTTGCTTTGACCATCCAAGACAAATCTACT
TGTTCAAGAATGAATGGAAAATATGCACCAATCACTGACGCTATGCTTTG
TGCTGCTAACACTGATGTCTCTGCCAATCAATCTGGTTGCCATGGTGATT
CAGGTGGTCCATTTGTTTGTCAAAACAGTAATGGTTCATGGACATTACAT
GGAGCTGTTAGCTGGGGATCACCAAGATGTGACATCAAAGATGCTTTCAC
TGTCTTTGCCAGAGTTGGACAATTTAGAAACTGGATCGAACAAAACATGA
AATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004365XLOC_004365Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007698-proteinTCONS_00007698-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007698-exon-sc0000079-1491911889:131163..131360TCONS_00007698-exon-sc0000079-1491911889:131163..131360Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1510915933:131163..131360TCONS_00007698-exon-sc0000079-1510915933:131163..131360Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1575043694:131163..131360TCONS_00007698-exon-sc0000079-1575043694:131163..131360Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1491911889:131641..131763TCONS_00007698-exon-sc0000079-1491911889:131641..131763Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1510915933:131641..131763TCONS_00007698-exon-sc0000079-1510915933:131641..131763Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1575043694:131641..131763TCONS_00007698-exon-sc0000079-1575043694:131641..131763Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1491911889:133385..133747TCONS_00007698-exon-sc0000079-1491911889:133385..133747Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1510915933:133385..133747TCONS_00007698-exon-sc0000079-1510915933:133385..133747Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1575043694:133385..133747TCONS_00007698-exon-sc0000079-1575043694:133385..133747Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1491911889:140980..141063TCONS_00007698-exon-sc0000079-1491911889:140980..141063Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1510915933:140980..141063TCONS_00007698-exon-sc0000079-1510915933:140980..141063Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1575043694:140980..141063TCONS_00007698-exon-sc0000079-1575043694:140980..141063Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1491911889:141417..141620TCONS_00007698-exon-sc0000079-1491911889:141417..141620Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1510915933:141417..141620TCONS_00007698-exon-sc0000079-1510915933:141417..141620Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1575043694:141417..141620TCONS_00007698-exon-sc0000079-1575043694:141417..141620Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1491911889:141988..142337TCONS_00007698-exon-sc0000079-1491911889:141988..142337Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1510915933:141988..142337TCONS_00007698-exon-sc0000079-1510915933:141988..142337Clytia hemisphaericaexon
TCONS_00007698-exon-sc0000079-1575043694:141988..142337TCONS_00007698-exon-sc0000079-1575043694:141988..142337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:131163..142337 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.79371e-06	0	0.110596	0	0	0.0831473	0	0	0	0.274336	0	0	0	0	0	0.587531	0	0	0	0	0	0	0	0	6.85337e-06	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR003582ShKT_dom
IPR018114TRYPSIN_HIS
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00007698 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.987e-51
Identity = 108/256 (42.19%), Postives = 149/256 (58.20%), Query Frame = 3 
Query:  573 CGRPQV--AMS---RVVGGKDAKAHSWPWQIGLHRNGGF-MCGGSIINSRWVVTAAHCVHRRSASDFKVKLGDHDRRRN-EGEQFIQVSKIITHQGYGR--LNNDIALLQLATPAKFGRNVQPVCLPNQGDAPQVGSKCYITGWGKIRHPG-YSHTILQQLALTIQDKSTCSRMNGKYAPITDAMLCAANTDVSANQSGCHGDSGGPFVCQNSNGSWTLHGAVSWGSPRCDIKDAFTVFARVGQFRNWIEQNMK*N 1310
            CG P +  A+S   R+V G++A   SWPWQ+ L  + GF  CGGS+I+  WVVTAAHC    S     V LG++DR  N E  Q + VS+ ITH  +    +NND+ LL+LA+PA++   + PVCL +  +A   G  C  TGWG++   G  +   LQQ+AL +   + C +  G  + ITD+M+CA      A  S C GDSGGP VCQ  N +W L G VSWG+  C+++ A  V+ RV +F  WI Q +  N
Sbjct:   19 CGIPAIKPALSFSQRIVNGENAVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC--NVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQYWG--SSITDSMICAGG----AGASSCQGDSGGPLVCQKGN-TWVLIGIVSWGTKNCNVR-APAVYTRVSKFSTWINQVIAYN 264
The following BLAST results are available for this feature:
BLAST of TCONS_00007698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL3.987e-5142.19Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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