TCONS_00007724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007724
Unique NameTCONS_00007724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007724 ID=TCONS_00007724|Name=TCONS_00007724|organism=Clytia hemisphaerica|type=transcript|length=2629bp
GTATATGCTGGCGTGCTACATACGAACGCTATGTGTAAACACAGTCCCTG
GGATGAGTCAAAAAATCCTGTCTTTAATATTAATACCAATGATTTATCAC
CAAGTAAAGGTTTGGAtttaaaattcatcaaagaaactttcaaaaaattt
attggTGGAAATTTCATCAATTGTTCTTCCGCAAATCAAACCACATTTAT
CCCTGGTATAAACAACACATCAGAAATAAATTTACCAGATAACTTACAAA
TTAGAGGACTTTCAAATCTCAGTTATCATCAAATGTGCCGAAACCTCAGT
ACTGGGAAATCCGTTTTCAATATCGGGAGATTGAATCGGTATTATTATCC
GATACGGAATGTTGTTTTGGAAAATCCGCATTTTTTCATAACAAAGTACG
GTGATTCTTTGACATTACTTGCTGTTGGAGAACTATATTTTTGTGGCTTT
GACATGGTTACTAGAGCTTCAAAAAAAGCTGTTCTTGAAGTCAAGAAAAA
AGTAACAACAATTACGATTGACGGATTAGAACCTGAATTCAAACCATCCT
TAATAGCAGATGCAGGGATTGTAAACATCAAACGTTTTCGGAACTACAAA
ATCGATCAAATGTCTCGATATAATTTCAATTATTTGACTGATCTCAAATT
AAGTCGAAATACAAAATTGACCATGCTGCTTCCACATGGAGGAGACCATG
AATCTGTAATGCTGGTCCTTCGAGATATTGCATCAAATTTCAAGACCAGA
TATAATGATGCAACAACAAGTGAAATTGTACCTCATAAAAGTATTGTCTC
AGAGATGTTTTCTTGTTGCAAAGATTTTCTGGgagtttatttcaaattga
aaatggaATTGGTGCATTTGACCAAGATGTTGATTCCTCAATATTATCAT
GAAATCTTGAATCCGAAATGGCCCTGGgatgaaattgttgaagatCTAAC
GTTCAAGATTTTATTGCTAAGAGGTTCCTTCAAAAGTGGGAAAAGCAGGA
AAATGTTATCAAGTATTCATTCACAAATAATTAAACTGATGAAGAAATAC
TCCATTTACGAGGGGATGCTGGTAGAAACGATAGGATCCCTCACTGAGGA
TGCTAAAGATTTGCCAAGATATCTCCAGCCTGGTTCACGGATCGATGCTG
TTCTCAAATATACGAATAAATTATTTGCTGAAATCAAGTTTTATCAACCA
CAAAATGCTGAATGTATATCCATGCAGAGTGATGGTTGGAAAGATTTCAA
TCGATTATTATCGAATCTGAAACGATTCTCAAAATCATTTATCAGGCGCT
CTTTAAAACAGAACAAAACATGTGGTAAAGATACATTTATGATGTCTTCC
ATCACAATTAAGTTCAATAGTATGTTTGGTTATTGGATGAGTCCAACAAT
TATTGTCCGTATGGTGGAATCAAAACATGAAGTCAAGTATGTAGCAAAAA
GACTGAACTTGTATAAATTCATTTCAGAAATTCTGTtaagatgaaaattt
ttcataTCATATataaaattactcaaaaaataTATGAGATAAGACTTATT
AGCTATTCGATCCCTGTCAGTGGGGGAAGCTTTAAGAATAAAGCCCGGGC
ACTCGATTTCCAACCAACAAccacctgaaaatgagcctgagatgtcgaca
caatgtgcaCGACACAATGTGCAAAGCAAATCAGAACTACTAAAGATACA
ACAGATTTTTACTGCCAGGACTTGCAATTCAGCAGCCCCAAACACTAAAG
TATCCtgctaaaagaagacccttatagtgcattttatcaaaagtacaccc
ctTACAAAGCATTTCGCCGGTctcaaaaaacctacccttaaggacGTCAC
ATGCCATGGGttggaccatatgagtgccccccccccaccaGGAATGACGA
ATTGTGTGACAGCTTGGGTATGATAGAAATTAGAAGAATATTAATGCTGC
TGGTTCAGTATAATCAAACGGGtgaccattgacttccaagtcCAAAGAGT
TGGACTCAAGACTTCTgcatgggaaatgaaaccacttatttcccatcaag
aacgcccgcgcgtggtttttccacaaacgccggattgaaattaaaatcta
tagctagatttcaaaaaatgcagtcttcaaaaacaaaggaaccgctagat
ataATCTGTCGTCATGACTACGGCGCATTCTAGGCGCactctggatggga
aataagtttCTTGCCTGGGTAAGATTAGAGATTCTACtatagccctttgg
gcttaaCTCAATGTGGGTAACGCTCAACAGGAATTTATATATAACAATAT
AATGtaatgtattatatcaaaaaagagtatatcaaaatataaagtacaca
tataaatttatattatataatatggaaataatgtatttttgagaatttaa
aaaaataatgctaATTATAAGAAATATTAAACTATAATAGCAAATGGTTG
ATCCATTTAAATACTGCGGCATAGCTGTTTTTAGGCAAACTATTTACAAA
GTAAAAGCGGGGTTTTCTCACATCTTGGATATCTAACTAGCATAAAGGAA
TTTTTGAAAGAATCCCGGAATCACATATGGTATATTATCTCCCTcaaaac
acccctgtttcacagccccgttggaattt
Run BLAST on NCBI

protein sequence of TCONS_00007724-protein

>TCONS_00007724-protein ID=TCONS_00007724-protein|Name=TCONS_00007724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp
VYAGVLHTNAMCKHSPWDESKNPVFNINTNDLSPSKGLDLKFIKETFKKF
IGGNFINCSSANQTTFIPGINNTSEINLPDNLQIRGLSNLSYHQMCRNLS
TGKSVFNIGRLNRYYYPIRNVVLENPHFFITKYGDSLTLLAVGELYFCGF
DMVTRASKKAVLEVKKKVTTITIDGLEPEFKPSLIADAGIVNIKRFRNYK
IDQMSRYNFNYLTDLKLSRNTKLTMLLPHGGDHESVMLVLRDIASNFKTR
YNDATTSEIVPHKSIVSEMFSCCKDFLGVYFKLKMELVHLTKMLIPQYYH
EILNPKWPWDEIVEDLTFKILLLRGSFKSGKSRKMLSSIHSQIIKLMKKY
SIYEGMLVETIGSLTEDAKDLPRYLQPGSRIDAVLKYTNKLFAEIKFYQP
QNAECISMQSDGWKDFNRLLSNLKRFSKSFIRRSLKQNKTCGKDTFMMSS
ITIKFNSMFGYWMSPTIIVRMVESKHEVKYVAKRLNLYKFISEILLR
Run BLAST on NCBI

transcript from alignment at sc0000079:108522..113180-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007724 ID=TCONS_00007724|Name=TCONS_00007724|organism=Clytia hemisphaerica|type=transcript|length=4659bp|location=Sequence derived from alignment at sc0000079:108522..113180- (Clytia hemisphaerica)
GTATATGCTGGCGTGCTACATACGAACGCTATGTGTAAACACAGTCCCTG GGATGAGTCAAAAAGTAAGTATATTAACTACTTCCCTGTGTGATTTTTCC AAAAACTCCCATCCTCTTTTAATACCAAGTACCCCCTGGGCAAAAAGGGA TACAGGGATGTGCCGCTAGGGTAGGCTCAGGTAGGGTCGCAAAATCACCA AAATAGAGAAATCAGTCCCTCGTAAGAATTTGGAAAAAATATGCAAAATT TTGAGAAAGACTAGGAGTGTCAGTCCCATTCAGGGTCACTTTTTTCCAAA AATCGAGTTCCACATAGGATCTATTTTTTCAAAGCGGACCCGGTGAAATT CTTGAGCCAGAAGTTGAGTTTTTTGCAGAATGGAATGGAAAATAATAGAT TATCATTGGTAAATCTTCAAAGTTAATCAGCCGTCAGGCCGAAAATTTTT CAAAAGAGGCTCTGATAAATGAATGGTTAAAAAGACTTCATTTTAGATCG TTTTGATATGTCAAAATAAATTTCACATTCCCCTAACCTAAAATCCTCCA GCTCCTCTAGTAAATACTTTATGACCGCTCCCTAAAGACATTTATGTGTA CTCTTATATTTCAGATCCTGTCTTTAATATTAATACCAATGATTTATCAC CAAGTAAAGGTTTGGATTTAAAATTCATCAAAGAAACTTTCAAAAAATTT ATTGGTGGAAATTTCATCAATTGTTCTTCCGCAAATCAAACCACATTTAT CCCTGGTATAAACAACACATCAGAAATAAATTTACCAGATAACTTACAAA TTAGAGGACTTTCAAATCTCAGTTATCATCAAATGTGCCGAAACCTCAGT ACTGGGAAATCCGTTTTCAATATCGGGAGATTGAATCGGTATTATTATCC GATACGGAATGTTGTTTTGGAAAATCCGCATTTTTTCATAACAAAGTACG GTGATTCTTTGACATTACTTGCTGTTGGAGAACTATATTTTTGTGGCTTT GACATGGTTACTAGAGCTTCAAAAAAAGCTGTTCTTGAAGTCAAGAAAAA AGTAACAACAATTACGATTGACGGATTAGAACCTGAATTCAAACCATCCT TAATAGCAGATGCAGGGATTGTAAACATCAAACGTTTTCGGAACTACAAA ATCGATCAAATGTCTCGATATAATTTCAATTATTTGACTGATCTCAAATT AAGTCGAAATACAAAATTGACCATGCTGCTTCCACATGGAGGAGACCATG AATCTGTAATGCTGGTCCTTCGAGATATTGCATCAAATTTCAAGACCAGA TATAATGATGCAACAACAAGTGAAATTGTACCTCATAAAAGTATTGTCTC AGAGATGTTTTCTTGTTGCAAAGATTTTCTGGGAGTTTATTTCAAATTGA AAATGGAATTGGTGCATTTGACCAAGATGTTGATTCCTCAATATTATCAT GAAATCTTGAATCCGAAATGGCCCTGGGATGAAATTGTTGAAGATCTAAC GGTAAGAAATTCTCAATGATATTCTGTCCTTATTTGAATAAATCTTTATT TAAAAACTCAGGTTATAATTCGAAAATTTTCGATTCAGAGTAACACCCAG AATAATTGTGCATAACAACCTCAATCTAAGATTATGGGTCCTTTTACACC GGCCCATATTGGCTTTATTTTTACTTCGTTGGTGCGTAGTAAGCAGCTGG TATAAGCTAAGGCCAGACTATATGGAAAAAAATATCTCAGGCGAAAAAAA GATTAAATGGAACCGGTGCTAAATTAGGGCCGACGTAAATAGGACCGATA AGGTATAGCGATATCCGATGATCTGATTCCCAAAAATCATTATTCCAAAG TTACTAATTTTCACAATGTTTAGCACACAGAACTATCTTTTTTTCAGTTC AAGATTTTATTGCTAAGAGGTTCCTTCAAAAGTGGGAAAAGCAGGAAAAT GTTATCAAGTATTCATTCACAAATAATTAAACTGATGAAGAAATACTCCA TTTACGAGGGGATGCTGGTAGAAACGATAGGATCCCTCACTGAGGATGCT AAAGATTTGCCAAGATATCTCCAGCCTGGTTCACGGATCGATGCTGTTCT CAAATATACGAATAAATTATTTGCTGAAATCAAGTTTTATCAACCACAAA ATGCTGAATGTATATCCATGCAGGTAATTCATTTTCAGATTAACAAATAA GATTTGTCATATTCACCGATTTTATAATTTTTTATATTTTCATGACATAA CAATTTTGCATATCTCTTTTTAGAATCCGAATACGGATTTCAGGTTAAGA TATTGCTCAGACCTCACCCACGCCCTCCTTCAGGTACCGCCCAGCACCCA CCTTCCCAATAAAGGTCGCACTTTTAGAGAAAATAACGAATCAGTGTAAT AAAAAATAAGTACTCCGGGAATACTTTTTGTCCTGAGAAATTACTGTACC GGAAAGAATTTAAGGACGAGACTGTTACTATTAAAAAAAGTACTGTTTCG AAGAATATTTTTTTTTGGTGACGCCGGCCAGGTTTGTTTTTGATAAAAAT TTTTATGTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAAAAGTCGAAA ATTTTCTTCGTCGCCCAACCATGGTGGGCGACATATTTTTTTGGCCCCCT CAATTCCATTCGCACGCCGGGGGCCATGTTTTATCAAATGTTTCAATTGT TTCAAGTTTTAAATCAAAATTATATTCTCATGTCTTTCTTCGTGACTTAT TTCATAGAGTGATGGTTGGAAAGATTTCAATCGATTATTATCGAATCTGA AACGATTCTCAAAATCATTTATCAGGCGCTCTTTAAAACAGAACAAAACA TGTGGTAAAGATACATTTATGATGTCTTCCATCACAATTAAGTTCAATAG TATGTTTGGTTATTGGATGAGTCCAACAATTATTGTCCGTATGGTGGAAT CAAAACATGAAGTCAAGTATGTAGCAAAAAGACTGAACTTGTATAAATTC ATTTCAGAAATTCTGTTAAGATGAAAATTTTTCATATCATATATAAAATT ACTCAAAAAATATATGAGATAAGACTTATTAGCTATTCGATCCCTGTCAG TGGGGGAAGCTTTAAGAATAAAGCCCGGGCACTCGATTTCCAACCAACAA CCACCTGAAAATGAGCCTGAGATGTCGACACAATGTGCACGACACAATGT GCAAAGCAAATCAGAACTACTAAAGATACAACAGATTTTTACTGCCAGGA CTTGCAATTCAGCAGCCCCAAACACTAAAGTATCCTGCTAAAAGAAGACC CTTATAGTGCATTTTATCAAAAGTACACCCCTTACAAAGCATTTCGCCGG TCTCAAAAAACCTACCCTTAAGGACGTCACATGCCATGGGTTGGACCATA TGAGTGCCCCCCCCCCACCAGGAATGACGAATTGTGTGACAGCTTGGGTA TGATAGAAATTAGAAGAATATTAATGCTGCTGGTTCAGTATAATCAAACG GGTGACCATTGACTTCCAAGTCCAAAGAGTTGGACTCAAGACTTCTGCAT GGGAAATGAAACCACTTATTTCCCATCAAGAACGCCCGCGCGTGGTTTTT CCACAAACGCCGGATTGAAATTAAAATCTATAGCTAGATTTCAAAAAATG CAGTCTTCAAAAACAAAGGAACCGCTAGATATAATCTGTCGTCATGACTA CGGCGCATTCTAGGCGCACTCTGGATGGGAAATAAGTTTCTTGCCTGGGT AAGATTAGAGATTCTACTATAGCCCTTTGGGCTTAACTCAATGTGGGTAA CGCTCAACAGGAATTTATATATAACAATATAATGTAATGTATTATATCAA AAAAGAGTATATCAAAATATAAAGTACACATATAAATTTATATTATATAA TATGGAAATAATGTATTTTTGAGAATTTAAAAAAATAATGCTAATTATAA GAAATATTAAACTATAATAGCAAATGGTTGATCCATTTAAATACTGCGGC ATAGCTGTTTTTAGGCAAACTATTTACAAAGTAAAAGCGGGGTTTTCTCA CATCTTGGATATCTAACTAGCATAAAGGAATTTTTGAAAGAATCCCGGAA TCACATATGGTATATTATCTCCCTCAAAACACCCCTGTTTCACAGCCCCG TTGGAATTT

Coding sequence (CDS) from alignment at sc0000079:108522..113180-

>TCONS_00007724 ID=TCONS_00007724|Name=TCONS_00007724|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0000079:108522..113180- (Clytia hemisphaerica)
GTATATGCTGGCGTGCTACATACGAACGCTATGTGTAAACACAGTCCCTG
GGATGAGTCAAAAAATCCTGTCTTTAATATTAATACCAATGATTTATCAC
CAAGTAAAGGTTTGGATTTAAAATTCATCAAAGAAACTTTCAAAAAATTT
ATTGGTGGAAATTTCATCAATTGTTCTTCCGCAAATCAAACCACATTTAT
CCCTGGTATAAACAACACATCAGAAATAAATTTACCAGATAACTTACAAA
TTAGAGGACTTTCAAATCTCAGTTATCATCAAATGTGCCGAAACCTCAGT
ACTGGGAAATCCGTTTTCAATATCGGGAGATTGAATCGGTATTATTATCC
GATACGGAATGTTGTTTTGGAAAATCCGCATTTTTTCATAACAAAGTACG
GTGATTCTTTGACATTACTTGCTGTTGGAGAACTATATTTTTGTGGCTTT
GACATGGTTACTAGAGCTTCAAAAAAAGCTGTTCTTGAAGTCAAGAAAAA
AGTAACAACAATTACGATTGACGGATTAGAACCTGAATTCAAACCATCCT
TAATAGCAGATGCAGGGATTGTAAACATCAAACGTTTTCGGAACTACAAA
ATCGATCAAATGTCTCGATATAATTTCAATTATTTGACTGATCTCAAATT
AAGTCGAAATACAAAATTGACCATGCTGCTTCCACATGGAGGAGACCATG
AATCTGTAATGCTGGTCCTTCGAGATATTGCATCAAATTTCAAGACCAGA
TATAATGATGCAACAACAAGTGAAATTGTACCTCATAAAAGTATTGTCTC
AGAGATGTTTTCTTGTTGCAAAGATTTTCTGGGAGTTTATTTCAAATTGA
AAATGGAATTGGTGCATTTGACCAAGATGTTGATTCCTCAATATTATCAT
GAAATCTTGAATCCGAAATGGCCCTGGGATGAAATTGTTGAAGATCTAAC
GTTCAAGATTTTATTGCTAAGAGGTTCCTTCAAAAGTGGGAAAAGCAGGA
AAATGTTATCAAGTATTCATTCACAAATAATTAAACTGATGAAGAAATAC
TCCATTTACGAGGGGATGCTGGTAGAAACGATAGGATCCCTCACTGAGGA
TGCTAAAGATTTGCCAAGATATCTCCAGCCTGGTTCACGGATCGATGCTG
TTCTCAAATATACGAATAAATTATTTGCTGAAATCAAGTTTTATCAACCA
CAAAATGCTGAATGTATATCCATGCAGAGTGATGGTTGGAAAGATTTCAA
TCGATTATTATCGAATCTGAAACGATTCTCAAAATCATTTATCAGGCGCT
CTTTAAAACAGAACAAAACATGTGGTAAAGATACATTTATGATGTCTTCC
ATCACAATTAAGTTCAATAGTATGTTTGGTTATTGGATGAGTCCAACAAT
TATTGTCCGTATGGTGGAATCAAAACATGAAGTCAAGTATGTAGCAAAAA
GACTGAACTTGTATAAATTCATTTCAGAAATTCTGTTAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004379XLOC_004379Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007724-exon-sc0000079-1575043694:113117..113180TCONS_00007724-exon-sc0000079-1575043694:113117..113180Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1575043694:111680..112566TCONS_00007724-exon-sc0000079-1575043694:111680..112566Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1575043694:111008..111283TCONS_00007724-exon-sc0000079-1575043694:111008..111283Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1575043694:108522..109923TCONS_00007724-exon-sc0000079-1575043694:108522..109923Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1510915933:113117..113180TCONS_00007724-exon-sc0000079-1510915933:113117..113180Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1510915933:111680..112566TCONS_00007724-exon-sc0000079-1510915933:111680..112566Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1510915933:111008..111283TCONS_00007724-exon-sc0000079-1510915933:111008..111283Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1510915933:108522..109923TCONS_00007724-exon-sc0000079-1510915933:108522..109923Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1491911889:113117..113180TCONS_00007724-exon-sc0000079-1491911889:113117..113180Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1491911889:111680..112566TCONS_00007724-exon-sc0000079-1491911889:111680..112566Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1491911889:111008..111283TCONS_00007724-exon-sc0000079-1491911889:111008..111283Clytia hemisphaericaexon
TCONS_00007724-exon-sc0000079-1491911889:108522..109923TCONS_00007724-exon-sc0000079-1491911889:108522..109923Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007724-proteinTCONS_00007724-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:108522..113180 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0428881 0.102272 0 0.118621 0.187611 1.97904 2.70105 0.568279 1.19427 0.846608 0.441884 1.10537 1.8226 0.0249737 0.0804017 1.78287 0.747669 1.38838 1.66338 46.0189 39.678 3.74843 4.38592 16.1335 9.20764 0.317281 0.236167 4.803 5.23874
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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