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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007724 ID=TCONS_00007724|Name=TCONS_00007724|organism=Clytia hemisphaerica|type=transcript|length=2629bp GTATATGCTGGCGTGCTACATACGAACGCTATGTGTAAACACAGTCCCTG GGATGAGTCAAAAAATCCTGTCTTTAATATTAATACCAATGATTTATCAC CAAGTAAAGGTTTGGAtttaaaattcatcaaagaaactttcaaaaaattt attggTGGAAATTTCATCAATTGTTCTTCCGCAAATCAAACCACATTTAT CCCTGGTATAAACAACACATCAGAAATAAATTTACCAGATAACTTACAAA TTAGAGGACTTTCAAATCTCAGTTATCATCAAATGTGCCGAAACCTCAGT ACTGGGAAATCCGTTTTCAATATCGGGAGATTGAATCGGTATTATTATCC GATACGGAATGTTGTTTTGGAAAATCCGCATTTTTTCATAACAAAGTACG GTGATTCTTTGACATTACTTGCTGTTGGAGAACTATATTTTTGTGGCTTT GACATGGTTACTAGAGCTTCAAAAAAAGCTGTTCTTGAAGTCAAGAAAAA AGTAACAACAATTACGATTGACGGATTAGAACCTGAATTCAAACCATCCT TAATAGCAGATGCAGGGATTGTAAACATCAAACGTTTTCGGAACTACAAA ATCGATCAAATGTCTCGATATAATTTCAATTATTTGACTGATCTCAAATT AAGTCGAAATACAAAATTGACCATGCTGCTTCCACATGGAGGAGACCATG AATCTGTAATGCTGGTCCTTCGAGATATTGCATCAAATTTCAAGACCAGA TATAATGATGCAACAACAAGTGAAATTGTACCTCATAAAAGTATTGTCTC AGAGATGTTTTCTTGTTGCAAAGATTTTCTGGgagtttatttcaaattga aaatggaATTGGTGCATTTGACCAAGATGTTGATTCCTCAATATTATCAT GAAATCTTGAATCCGAAATGGCCCTGGgatgaaattgttgaagatCTAAC GTTCAAGATTTTATTGCTAAGAGGTTCCTTCAAAAGTGGGAAAAGCAGGA AAATGTTATCAAGTATTCATTCACAAATAATTAAACTGATGAAGAAATAC TCCATTTACGAGGGGATGCTGGTAGAAACGATAGGATCCCTCACTGAGGA TGCTAAAGATTTGCCAAGATATCTCCAGCCTGGTTCACGGATCGATGCTG TTCTCAAATATACGAATAAATTATTTGCTGAAATCAAGTTTTATCAACCA CAAAATGCTGAATGTATATCCATGCAGAGTGATGGTTGGAAAGATTTCAA TCGATTATTATCGAATCTGAAACGATTCTCAAAATCATTTATCAGGCGCT CTTTAAAACAGAACAAAACATGTGGTAAAGATACATTTATGATGTCTTCC ATCACAATTAAGTTCAATAGTATGTTTGGTTATTGGATGAGTCCAACAAT TATTGTCCGTATGGTGGAATCAAAACATGAAGTCAAGTATGTAGCAAAAA GACTGAACTTGTATAAATTCATTTCAGAAATTCTGTtaagatgaaaattt ttcataTCATATataaaattactcaaaaaataTATGAGATAAGACTTATT AGCTATTCGATCCCTGTCAGTGGGGGAAGCTTTAAGAATAAAGCCCGGGC ACTCGATTTCCAACCAACAAccacctgaaaatgagcctgagatgtcgaca caatgtgcaCGACACAATGTGCAAAGCAAATCAGAACTACTAAAGATACA ACAGATTTTTACTGCCAGGACTTGCAATTCAGCAGCCCCAAACACTAAAG TATCCtgctaaaagaagacccttatagtgcattttatcaaaagtacaccc ctTACAAAGCATTTCGCCGGTctcaaaaaacctacccttaaggacGTCAC ATGCCATGGGttggaccatatgagtgccccccccccaccaGGAATGACGA ATTGTGTGACAGCTTGGGTATGATAGAAATTAGAAGAATATTAATGCTGC TGGTTCAGTATAATCAAACGGGtgaccattgacttccaagtcCAAAGAGT TGGACTCAAGACTTCTgcatgggaaatgaaaccacttatttcccatcaag aacgcccgcgcgtggtttttccacaaacgccggattgaaattaaaatcta tagctagatttcaaaaaatgcagtcttcaaaaacaaaggaaccgctagat ataATCTGTCGTCATGACTACGGCGCATTCTAGGCGCactctggatggga aataagtttCTTGCCTGGGTAAGATTAGAGATTCTACtatagccctttgg gcttaaCTCAATGTGGGTAACGCTCAACAGGAATTTATATATAACAATAT AATGtaatgtattatatcaaaaaagagtatatcaaaatataaagtacaca tataaatttatattatataatatggaaataatgtatttttgagaatttaa aaaaataatgctaATTATAAGAAATATTAAACTATAATAGCAAATGGTTG ATCCATTTAAATACTGCGGCATAGCTGTTTTTAGGCAAACTATTTACAAA GTAAAAGCGGGGTTTTCTCACATCTTGGATATCTAACTAGCATAAAGGAA TTTTTGAAAGAATCCCGGAATCACATATGGTATATTATCTCCCTcaaaac acccctgtttcacagccccgttggaattt Run BLAST on NCBI protein sequence of TCONS_00007724-protein >TCONS_00007724-protein ID=TCONS_00007724-protein|Name=TCONS_00007724-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp
VYAGVLHTNAMCKHSPWDESKNPVFNINTNDLSPSKGLDLKFIKETFKKF IGGNFINCSSANQTTFIPGINNTSEINLPDNLQIRGLSNLSYHQMCRNLS TGKSVFNIGRLNRYYYPIRNVVLENPHFFITKYGDSLTLLAVGELYFCGF DMVTRASKKAVLEVKKKVTTITIDGLEPEFKPSLIADAGIVNIKRFRNYK IDQMSRYNFNYLTDLKLSRNTKLTMLLPHGGDHESVMLVLRDIASNFKTR YNDATTSEIVPHKSIVSEMFSCCKDFLGVYFKLKMELVHLTKMLIPQYYH EILNPKWPWDEIVEDLTFKILLLRGSFKSGKSRKMLSSIHSQIIKLMKKY SIYEGMLVETIGSLTEDAKDLPRYLQPGSRIDAVLKYTNKLFAEIKFYQP QNAECISMQSDGWKDFNRLLSNLKRFSKSFIRRSLKQNKTCGKDTFMMSS ITIKFNSMFGYWMSPTIIVRMVESKHEVKYVAKRLNLYKFISEILLR Run BLAST on NCBI transcript from alignment at sc0000079:108522..113180- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007724 ID=TCONS_00007724|Name=TCONS_00007724|organism=Clytia hemisphaerica|type=transcript|length=4659bp|location=Sequence derived from alignment at sc0000079:108522..113180- (Clytia hemisphaerica) GTATATGCTGGCGTGCTACATACGAACGCTATGTGTAAACACAGTCCCTG
GGATGAGTCAAAAAGTAAGTATATTAACTACTTCCCTGTGTGATTTTTCC
AAAAACTCCCATCCTCTTTTAATACCAAGTACCCCCTGGGCAAAAAGGGA
TACAGGGATGTGCCGCTAGGGTAGGCTCAGGTAGGGTCGCAAAATCACCA
AAATAGAGAAATCAGTCCCTCGTAAGAATTTGGAAAAAATATGCAAAATT
TTGAGAAAGACTAGGAGTGTCAGTCCCATTCAGGGTCACTTTTTTCCAAA
AATCGAGTTCCACATAGGATCTATTTTTTCAAAGCGGACCCGGTGAAATT
CTTGAGCCAGAAGTTGAGTTTTTTGCAGAATGGAATGGAAAATAATAGAT
TATCATTGGTAAATCTTCAAAGTTAATCAGCCGTCAGGCCGAAAATTTTT
CAAAAGAGGCTCTGATAAATGAATGGTTAAAAAGACTTCATTTTAGATCG
TTTTGATATGTCAAAATAAATTTCACATTCCCCTAACCTAAAATCCTCCA
GCTCCTCTAGTAAATACTTTATGACCGCTCCCTAAAGACATTTATGTGTA
CTCTTATATTTCAGATCCTGTCTTTAATATTAATACCAATGATTTATCAC
CAAGTAAAGGTTTGGATTTAAAATTCATCAAAGAAACTTTCAAAAAATTT
ATTGGTGGAAATTTCATCAATTGTTCTTCCGCAAATCAAACCACATTTAT
CCCTGGTATAAACAACACATCAGAAATAAATTTACCAGATAACTTACAAA
TTAGAGGACTTTCAAATCTCAGTTATCATCAAATGTGCCGAAACCTCAGT
ACTGGGAAATCCGTTTTCAATATCGGGAGATTGAATCGGTATTATTATCC
GATACGGAATGTTGTTTTGGAAAATCCGCATTTTTTCATAACAAAGTACG
GTGATTCTTTGACATTACTTGCTGTTGGAGAACTATATTTTTGTGGCTTT
GACATGGTTACTAGAGCTTCAAAAAAAGCTGTTCTTGAAGTCAAGAAAAA
AGTAACAACAATTACGATTGACGGATTAGAACCTGAATTCAAACCATCCT
TAATAGCAGATGCAGGGATTGTAAACATCAAACGTTTTCGGAACTACAAA
ATCGATCAAATGTCTCGATATAATTTCAATTATTTGACTGATCTCAAATT
AAGTCGAAATACAAAATTGACCATGCTGCTTCCACATGGAGGAGACCATG
AATCTGTAATGCTGGTCCTTCGAGATATTGCATCAAATTTCAAGACCAGA
TATAATGATGCAACAACAAGTGAAATTGTACCTCATAAAAGTATTGTCTC
AGAGATGTTTTCTTGTTGCAAAGATTTTCTGGGAGTTTATTTCAAATTGA
AAATGGAATTGGTGCATTTGACCAAGATGTTGATTCCTCAATATTATCAT
GAAATCTTGAATCCGAAATGGCCCTGGGATGAAATTGTTGAAGATCTAAC
GGTAAGAAATTCTCAATGATATTCTGTCCTTATTTGAATAAATCTTTATT
TAAAAACTCAGGTTATAATTCGAAAATTTTCGATTCAGAGTAACACCCAG
AATAATTGTGCATAACAACCTCAATCTAAGATTATGGGTCCTTTTACACC
GGCCCATATTGGCTTTATTTTTACTTCGTTGGTGCGTAGTAAGCAGCTGG
TATAAGCTAAGGCCAGACTATATGGAAAAAAATATCTCAGGCGAAAAAAA
GATTAAATGGAACCGGTGCTAAATTAGGGCCGACGTAAATAGGACCGATA
AGGTATAGCGATATCCGATGATCTGATTCCCAAAAATCATTATTCCAAAG
TTACTAATTTTCACAATGTTTAGCACACAGAACTATCTTTTTTTCAGTTC
AAGATTTTATTGCTAAGAGGTTCCTTCAAAAGTGGGAAAAGCAGGAAAAT
GTTATCAAGTATTCATTCACAAATAATTAAACTGATGAAGAAATACTCCA
TTTACGAGGGGATGCTGGTAGAAACGATAGGATCCCTCACTGAGGATGCT
AAAGATTTGCCAAGATATCTCCAGCCTGGTTCACGGATCGATGCTGTTCT
CAAATATACGAATAAATTATTTGCTGAAATCAAGTTTTATCAACCACAAA
ATGCTGAATGTATATCCATGCAGGTAATTCATTTTCAGATTAACAAATAA
GATTTGTCATATTCACCGATTTTATAATTTTTTATATTTTCATGACATAA
CAATTTTGCATATCTCTTTTTAGAATCCGAATACGGATTTCAGGTTAAGA
TATTGCTCAGACCTCACCCACGCCCTCCTTCAGGTACCGCCCAGCACCCA
CCTTCCCAATAAAGGTCGCACTTTTAGAGAAAATAACGAATCAGTGTAAT
AAAAAATAAGTACTCCGGGAATACTTTTTGTCCTGAGAAATTACTGTACC
GGAAAGAATTTAAGGACGAGACTGTTACTATTAAAAAAAGTACTGTTTCG
AAGAATATTTTTTTTTGGTGACGCCGGCCAGGTTTGTTTTTGATAAAAAT
TTTTATGTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAAAAGTCGAAA
ATTTTCTTCGTCGCCCAACCATGGTGGGCGACATATTTTTTTGGCCCCCT
CAATTCCATTCGCACGCCGGGGGCCATGTTTTATCAAATGTTTCAATTGT
TTCAAGTTTTAAATCAAAATTATATTCTCATGTCTTTCTTCGTGACTTAT
TTCATAGAGTGATGGTTGGAAAGATTTCAATCGATTATTATCGAATCTGA
AACGATTCTCAAAATCATTTATCAGGCGCTCTTTAAAACAGAACAAAACA
TGTGGTAAAGATACATTTATGATGTCTTCCATCACAATTAAGTTCAATAG
TATGTTTGGTTATTGGATGAGTCCAACAATTATTGTCCGTATGGTGGAAT
CAAAACATGAAGTCAAGTATGTAGCAAAAAGACTGAACTTGTATAAATTC
ATTTCAGAAATTCTGTTAAGATGAAAATTTTTCATATCATATATAAAATT
ACTCAAAAAATATATGAGATAAGACTTATTAGCTATTCGATCCCTGTCAG
TGGGGGAAGCTTTAAGAATAAAGCCCGGGCACTCGATTTCCAACCAACAA
CCACCTGAAAATGAGCCTGAGATGTCGACACAATGTGCACGACACAATGT
GCAAAGCAAATCAGAACTACTAAAGATACAACAGATTTTTACTGCCAGGA
CTTGCAATTCAGCAGCCCCAAACACTAAAGTATCCTGCTAAAAGAAGACC
CTTATAGTGCATTTTATCAAAAGTACACCCCTTACAAAGCATTTCGCCGG
TCTCAAAAAACCTACCCTTAAGGACGTCACATGCCATGGGTTGGACCATA
TGAGTGCCCCCCCCCCACCAGGAATGACGAATTGTGTGACAGCTTGGGTA
TGATAGAAATTAGAAGAATATTAATGCTGCTGGTTCAGTATAATCAAACG
GGTGACCATTGACTTCCAAGTCCAAAGAGTTGGACTCAAGACTTCTGCAT
GGGAAATGAAACCACTTATTTCCCATCAAGAACGCCCGCGCGTGGTTTTT
CCACAAACGCCGGATTGAAATTAAAATCTATAGCTAGATTTCAAAAAATG
CAGTCTTCAAAAACAAAGGAACCGCTAGATATAATCTGTCGTCATGACTA
CGGCGCATTCTAGGCGCACTCTGGATGGGAAATAAGTTTCTTGCCTGGGT
AAGATTAGAGATTCTACTATAGCCCTTTGGGCTTAACTCAATGTGGGTAA
CGCTCAACAGGAATTTATATATAACAATATAATGTAATGTATTATATCAA
AAAAGAGTATATCAAAATATAAAGTACACATATAAATTTATATTATATAA
TATGGAAATAATGTATTTTTGAGAATTTAAAAAAATAATGCTAATTATAA
GAAATATTAAACTATAATAGCAAATGGTTGATCCATTTAAATACTGCGGC
ATAGCTGTTTTTAGGCAAACTATTTACAAAGTAAAAGCGGGGTTTTCTCA
CATCTTGGATATCTAACTAGCATAAAGGAATTTTTGAAAGAATCCCGGAA
TCACATATGGTATATTATCTCCCTCAAAACACCCCTGTTTCACAGCCCCG
TTGGAATTT Coding sequence (CDS) from alignment at sc0000079:108522..113180- >TCONS_00007724 ID=TCONS_00007724|Name=TCONS_00007724|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0000079:108522..113180- (Clytia hemisphaerica) GTATATGCTGGCGTGCTACATACGAACGCTATGTGTAAACACAGTCCCTG GGATGAGTCAAAAAATCCTGTCTTTAATATTAATACCAATGATTTATCAC CAAGTAAAGGTTTGGATTTAAAATTCATCAAAGAAACTTTCAAAAAATTT ATTGGTGGAAATTTCATCAATTGTTCTTCCGCAAATCAAACCACATTTAT CCCTGGTATAAACAACACATCAGAAATAAATTTACCAGATAACTTACAAA TTAGAGGACTTTCAAATCTCAGTTATCATCAAATGTGCCGAAACCTCAGT ACTGGGAAATCCGTTTTCAATATCGGGAGATTGAATCGGTATTATTATCC GATACGGAATGTTGTTTTGGAAAATCCGCATTTTTTCATAACAAAGTACG GTGATTCTTTGACATTACTTGCTGTTGGAGAACTATATTTTTGTGGCTTT GACATGGTTACTAGAGCTTCAAAAAAAGCTGTTCTTGAAGTCAAGAAAAA AGTAACAACAATTACGATTGACGGATTAGAACCTGAATTCAAACCATCCT TAATAGCAGATGCAGGGATTGTAAACATCAAACGTTTTCGGAACTACAAA ATCGATCAAATGTCTCGATATAATTTCAATTATTTGACTGATCTCAAATT AAGTCGAAATACAAAATTGACCATGCTGCTTCCACATGGAGGAGACCATG AATCTGTAATGCTGGTCCTTCGAGATATTGCATCAAATTTCAAGACCAGA TATAATGATGCAACAACAAGTGAAATTGTACCTCATAAAAGTATTGTCTC AGAGATGTTTTCTTGTTGCAAAGATTTTCTGGGAGTTTATTTCAAATTGA AAATGGAATTGGTGCATTTGACCAAGATGTTGATTCCTCAATATTATCAT GAAATCTTGAATCCGAAATGGCCCTGGGATGAAATTGTTGAAGATCTAAC GTTCAAGATTTTATTGCTAAGAGGTTCCTTCAAAAGTGGGAAAAGCAGGA AAATGTTATCAAGTATTCATTCACAAATAATTAAACTGATGAAGAAATAC TCCATTTACGAGGGGATGCTGGTAGAAACGATAGGATCCCTCACTGAGGA TGCTAAAGATTTGCCAAGATATCTCCAGCCTGGTTCACGGATCGATGCTG TTCTCAAATATACGAATAAATTATTTGCTGAAATCAAGTTTTATCAACCA CAAAATGCTGAATGTATATCCATGCAGAGTGATGGTTGGAAAGATTTCAA TCGATTATTATCGAATCTGAAACGATTCTCAAAATCATTTATCAGGCGCT CTTTAAAACAGAACAAAACATGTGGTAAAGATACATTTATGATGTCTTCC ATCACAATTAAGTTCAATAGTATGTTTGGTTATTGGATGAGTCCAACAAT TATTGTCCGTATGGTGGAATCAAAACATGAAGTCAAGTATGTAGCAAAAA GACTGAACTTGTATAAATTCATTTCAGAAATTCTGTTAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007724-exon-sc0000079-1575043694:113117..113180 | TCONS_00007724-exon-sc0000079-1575043694:113117..113180 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1575043694:111680..112566 | TCONS_00007724-exon-sc0000079-1575043694:111680..112566 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1575043694:111008..111283 | TCONS_00007724-exon-sc0000079-1575043694:111008..111283 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1575043694:108522..109923 | TCONS_00007724-exon-sc0000079-1575043694:108522..109923 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1510915933:113117..113180 | TCONS_00007724-exon-sc0000079-1510915933:113117..113180 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1510915933:111680..112566 | TCONS_00007724-exon-sc0000079-1510915933:111680..112566 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1510915933:111008..111283 | TCONS_00007724-exon-sc0000079-1510915933:111008..111283 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1510915933:108522..109923 | TCONS_00007724-exon-sc0000079-1510915933:108522..109923 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1491911889:113117..113180 | TCONS_00007724-exon-sc0000079-1491911889:113117..113180 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1491911889:111680..112566 | TCONS_00007724-exon-sc0000079-1491911889:111680..112566 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1491911889:111008..111283 | TCONS_00007724-exon-sc0000079-1491911889:111008..111283 | Clytia hemisphaerica | exon |
TCONS_00007724-exon-sc0000079-1491911889:108522..109923 | TCONS_00007724-exon-sc0000079-1491911889:108522..109923 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000079 | supercontig | sc0000079:108522..113180 - |
Blast
The following BLAST results are available for this feature:
|