TCONS_00007734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007734
Unique NameTCONS_00007734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007734 ID=TCONS_00007734|Name=TCONS_00007734|organism=Clytia hemisphaerica|type=transcript|length=403bp
tttagaattgaaatacaattaatttcaacaaaaaaaatgcttcaaaaagT
GAAGATCAGTTCAGATGCACTGCAAGTTTGCATGAGTCATGCATTGTcaa
ctgaaaaagaagaaataatggGTCTTCTTATCGGAGAGGTAGAGGATGGT
GTATCACATGTCCACGCTACCATTATGTTATATCGTTTGGACAAACGAAA
AGATCGTGTAGAAATTTCACCTGAACAGTTATCTGAAGCTTCAAGTAAAG
CTGAAGAGATGGGCAAGATGACGCATAACCATCGACCAATGAGAATCATC
GGATGGTATCATTCACATCCTCACATCACTGTGTGGCCTTCACATGTTGG
TATGTcgaattacacgttttttataagaacattttaaattttttgaagtt
ttg
Run BLAST on NCBI

protein sequence of TCONS_00007734-protein

>TCONS_00007734-protein ID=TCONS_00007734-protein|Name=TCONS_00007734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
FRIEIQLISTKKMLQKVKISSDALQVCMSHALSTEKEEIMGLLIGEVEDG
VSHVHATIMLYRLDKRKDRVEISPEQLSEASSKAEEMGKMTHNHRPMRII
GWYHSHPHITVWPSHVGMSNYTFFIRTF
Run BLAST on NCBI

transcript from alignment at sc0000079:421673..422750-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007734 ID=TCONS_00007734|Name=TCONS_00007734|organism=Clytia hemisphaerica|type=transcript|length=1078bp|location=Sequence derived from alignment at sc0000079:421673..422750- (Clytia hemisphaerica)
TTTAGAATTGAAATACAATTAATTTCAACAAAAAAAATGCTTCAAAAAGT
GAAGATCAGTTCAGATGCACTGCAAGTTTGCATGAGTCATGCATTGTCAA
CTGAAAAAGAAGAAATAATGGGTCTTCTTATCGGAGAGGTTTGTTTCAGT
TTTATGAAGAAAAAATGGATTTGGCATTGAATTTTAAGGATTGCTTTTCG
ATGTTGCGTAATTAATCTTCTCTTAGTGCTCTTCTAAACTTTGGGCAATG
CATGTAGCATTTTCTTCTAAGTGTTTTCAGAAAATTTTGGATTTTAATTT
TGGATTTAATTTACAATCTAACTGTGCAATTTTTTTGGAGAAGGGTAGGG
TACATTTTTTAACCTGAGTTACACCTCTGTTGATTGGTAAGGATTCTCCT
CAGATCACTTGTAATCTATAGTCTCTTAGTTTAAAAGTTTAATCTCACTT
TTTTAAATTGAATGCTGCCTTTTACATGAATTAAAATTGATATAGGTAGA
GGATGGTGTATCACATGTCCACGCTACCATTATGTTATATCGTTTGGACA
AACGAAAAGATCGTGTAGAAATTTCACCTGAACAGTTATCTGAAGCTTCA
AGTAAAGCTGAAATATCCTTTCCATCACTTTCATACTCATAGTAATCTTG
TCACAACGCAGTAATTAAATAAAACTTAGTTTTGATTGAAGGTTTAAAAA
TATTTTATCTTTCAAGATTTGATAAATAATTAATATTAGGTGGGAACTTA
ATTTTGGTGGGTTGGCTTATGTTGACGAGTGACGCAATTTTGTTTTTTGA
TTTGGCGCAAACTAACAAAATTTTGCCAATGTGACTTAATAGCTAAGTTG
GTTTTCGCCAAACCTTCATTTTATAAAGAGTAAATAAATCACTATCCTTA
ACTGTTATCTCTATTTCTCCAATGTTAAACGAGATGGGCAAGATGACGCA
TAACCATCGACCAATGAGAATCATCGGATGGTATCATTCACATCCTCACA
TCACTGTGTGGCCTTCACATGTTGGTATGTCGAATTACACGTTTTTTATA
AGAACATTTTAAATTTTTTGAAGTTTTG

Coding sequence (CDS) from alignment at sc0000079:421673..422750-

>TCONS_00007734 ID=TCONS_00007734|Name=TCONS_00007734|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000079:421673..422750- (Clytia hemisphaerica)
TTTAGAATTGAAATACAATTAATTTCAACAAAAAAAATGCTTCAAAAAGT
GAAGATCAGTTCAGATGCACTGCAAGTTTGCATGAGTCATGCATTGTCAA
CTGAAAAAGAAGAAATAATGGGTCTTCTTATCGGAGAGGTAGAGGATGGT
GTATCACATGTCCACGCTACCATTATGTTATATCGTTTGGACAAACGAAA
AGATCGTGTAGAAATTTCACCTGAACAGTTATCTGAAGCTTCAAGTAAAG
CTGAAGAGATGGGCAAGATGACGCATAACCATCGACCAATGAGAATCATC
GGATGGTATCATTCACATCCTCACATCACTGTGTGGCCTTCACATGTTGG
TATGTCGAATTACACGTTTTTTATAAGAACATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004385XLOC_004385Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007734-proteinTCONS_00007734-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007734-exon-sc0000079-1575043694:422613..422750TCONS_00007734-exon-sc0000079-1575043694:422613..422750Clytia hemisphaericaexon
TCONS_00007734-exon-sc0000079-1575043694:422139..422255TCONS_00007734-exon-sc0000079-1575043694:422139..422255Clytia hemisphaericaexon
TCONS_00007734-exon-sc0000079-1575043694:421673..421820TCONS_00007734-exon-sc0000079-1575043694:421673..421820Clytia hemisphaericaexon
TCONS_00007734-exon-sc0000079-1510915933:422613..422750TCONS_00007734-exon-sc0000079-1510915933:422613..422750Clytia hemisphaericaexon
TCONS_00007734-exon-sc0000079-1510915933:422139..422255TCONS_00007734-exon-sc0000079-1510915933:422139..422255Clytia hemisphaericaexon
TCONS_00007734-exon-sc0000079-1510915933:421673..421820TCONS_00007734-exon-sc0000079-1510915933:421673..421820Clytia hemisphaericaexon
TCONS_00007734-exon-sc0000079-1491911889:422613..422750TCONS_00007734-exon-sc0000079-1491911889:422613..422750Clytia hemisphaericaexon
TCONS_00007734-exon-sc0000079-1491911889:422139..422255TCONS_00007734-exon-sc0000079-1491911889:422139..422255Clytia hemisphaericaexon
TCONS_00007734-exon-sc0000079-1491911889:421673..421820TCONS_00007734-exon-sc0000079-1491911889:421673..421820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:421673..422750 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.9175	31.7431	26.9179	32.0071	4.43911	1.75392	5.64275	11.4458	15.4105	8.58979	7.04052	10.4743	11.3111	16.1674	10.2804	12.3697	18.8078	19.981	2.916	4.47537	6.01167	6.46827	21.1778	19.063	17.8674	13.8434	5.01516	4.01423	12.7875	17.7849
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00007734 vs. Swiss-Prot (Human)
Match: BRCC3 (Lys-63-specific deubiquitinase BRCC36 OS=Homo sapiens GN=BRCC3 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 5.715e-38
Identity = 66/125 (52.80%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:   55 ISSDALQVCMSHALSTEKEEIMGLLIGEVEDG-------------------------VSHVHATIMLYRLDKRKDRVEISPEQLSEASSKAEEMGKMTHNHRPMRIIGWYHSHPHITVWPSHVGM 354
            + SDA  VC++HALSTEKEE+MGL IGE+ D                          + H+H+ I+L R DKRKDRVEISPEQLS AS++AE + ++T   RPMR++GWYHSHPHITVWPSHV +
Sbjct:   14 LESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMRTVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTG--RPMRVVGWYHSHPHITVWPSHVDV 136
The following BLAST results are available for this feature:
BLAST of TCONS_00007734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRCC35.715e-3852.80Lys-63-specific deubiquitinase BRCC36 OS=Homo sapi... [more]
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