TCONS_00007768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007768
Unique NameTCONS_00007768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007768 ID=TCONS_00007768|Name=TCONS_00007768|organism=Clytia hemisphaerica|type=transcript|length=613bp
CCTCTAACAGTTGAGCTGGTCCATAATAAATCCATCCTTCTTCATCTTTC
ATCTCTAAATCATCATCTTTCAATTTTGATTGTCCCAATAATTCACATTT
CCCCAACTCCTTATTCACATTGATAGATTTGCATTTGTTTTTATTAGCTA
GGCAGTGTGTCAAGCATTTAATAGGGTTACCGTTAGTACCAGATGGAGTA
GCAATTACTTCAGCGGTAAACCTTTTGTCTTTGCGTGTATCAGTAAAAGT
TAACTCGTTTTGTGAAAGCACTCCATTTATAAAAAGTGATATAACCATTA
GAATTTTAAGCATCTTCTCCCCTCACTTTACGAtggaaaatttttgagca
atcaATCTAATTTCACTTTTTGTTTTTCGATACCAATTGTCTATGAAAAT
CTACGTTTGACTAACGACAAAATCATGATCTCTAAATCCAGACAAGATTG
aggaataatttttttgaattcaaaatttttgcttgtGTCTACATTTATTA
TTTATGATTCCCCggtttcaatacaaaatagGTTAGCGGGCCGAAATTTC
tgccaccaataatggcggGCCGAAATTTCTTTCGCCACATTTATTGTTTA
AGTGTAAAGAGAC
Run BLAST on NCBI

protein sequence of TCONS_00007768-protein

>TCONS_00007768-protein ID=TCONS_00007768-protein|Name=TCONS_00007768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MLKILMVISLFINGVLSQNELTFTDTRKDKRFTAEVIATPSGTNGNPIKC
LTHCLANKNKCKSINVNKELGKCELLGQSKLKDDDLEMKDEEGWIYYGPA
QLLE
Run BLAST on NCBI

transcript from alignment at sc0000079:408730..409342

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007768 ID=TCONS_00007768|Name=TCONS_00007768|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at sc0000079:408730..409342 (Clytia hemisphaerica)
GTCTCTTTACACTTAAACAATAAATGTGGCGAAAGAAATTTCGGCccgcc
attattggtggcaGAAATTTCGGCCCGCTAACctattttgtattgaaacc
GGGGAATCATAAATAATAAATGTAGACacaagcaaaaattttgaattcaa
aaaaattattcctCAATCTTGTCTGGATTTAGAGATCATGATTTTGTCGT
TAGTCAAACGTAGATTTTCATAGACAATTGGTATCGAAAAACAAAAAGTG
AAATTAGATtgattgctcaaaaattttccaTCGTAAAGTGAGGGGAGAAG
ATGCTTAAAATTCTAATGGTTATATCACTTTTTATAAATGGAGTGCTTTC
ACAAAACGAGTTAACTTTTACTGATACACGCAAAGACAAAAGGTTTACCG
CTGAAGTAATTGCTACTCCATCTGGTACTAACGGTAACCCTATTAAATGC
TTGACACACTGCCTAGCTAATAAAAACAAATGCAAATCTATCAATGTGAA
TAAGGAGTTGGGGAAATGTGAATTATTGGGACAATCAAAATTGAAAGATG
ATGATTTAGAGATGAAAGATGAAGAAGGATGGATTTATTATGGACCAGCT
CAACTGTTAGAGG

Coding sequence (CDS) from alignment at sc0000079:408730..409342

>TCONS_00007768 ID=TCONS_00007768|Name=TCONS_00007768|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000079:408730..409342 (Clytia hemisphaerica)
ATGCTTAAAATTCTAATGGTTATATCACTTTTTATAAATGGAGTGCTTTC
ACAAAACGAGTTAACTTTTACTGATACACGCAAAGACAAAAGGTTTACCG
CTGAAGTAATTGCTACTCCATCTGGTACTAACGGTAACCCTATTAAATGC
TTGACACACTGCCTAGCTAATAAAAACAAATGCAAATCTATCAATGTGAA
TAAGGAGTTGGGGAAATGTGAATTATTGGGACAATCAAAATTGAAAGATG
ATGATTTAGAGATGAAAGATGAAGAAGGATGGATTTATTATGGACCAGCT
CAACTGTTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004415XLOC_004415Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007768-proteinTCONS_00007768-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007768-exon-sc0000079-1491911889:408730..409342TCONS_00007768-exon-sc0000079-1491911889:408730..409342Clytia hemisphaericaexon
TCONS_00007768-exon-sc0000079-1510915933:408730..409342TCONS_00007768-exon-sc0000079-1510915933:408730..409342Clytia hemisphaericaexon
TCONS_00007768-exon-sc0000079-1575043694:408730..409342TCONS_00007768-exon-sc0000079-1575043694:408730..409342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079supercontigsc0000079:408730..409342 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.171269	0.19886	0	0	0	0.451606	0.317091	0.074001	0.0916622	0.533817	0.409396	1.28488	0.727835	0.548514	0.909716	0	0	3.17392	4.20044	0.254717	0	0.100688	0.274621	0.0942844	0.336586	0.240827	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top