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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007985 ID=TCONS_00007985|Name=TCONS_00007985|organism=Clytia hemisphaerica|type=transcript|length=5853bpRun BLAST on NCBI protein sequence of TCONS_00007985-protein >TCONS_00007985-protein ID=TCONS_00007985-protein|Name=TCONS_00007985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1188bp MGNSSSLCSGKGDVQTVNSTKPTKAKVTTVNVKPAAETTTTVVNGDQSNKRun BLAST on NCBI transcript from alignment at sc0000081:247906..293001+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007985 ID=TCONS_00007985|Name=TCONS_00007985|organism=Clytia hemisphaerica|type=transcript|length=45096bp|location=Sequence derived from alignment at sc0000081:247906..293001+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000081:247906..293001+ >TCONS_00007985 ID=TCONS_00007985|Name=TCONS_00007985|organism=Clytia hemisphaerica|type=CDS|length=53505bp|location=Sequence derived from alignment at sc0000081:247906..293001+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007985 vs. Swiss-Prot (Human)
Match: KCRB (Creatine kinase B-type OS=Homo sapiens GN=CKB PE=1 SV=1) HSP 1 Score: 539.65 bits (1389), Expect = 7.767e-175 Identity = 245/359 (68.25%), Postives = 300/359 (83.57%), Query Frame = 2
Query: 3500 FPDLSKHSNWMAKCLTPEVYAKYQGVKTPSGFTIDQVIQTGVDNPGHPFIMTVGCVAGDEESYETFADLFDPVIEKRFNGFKKTDMHKTDLSYQKLKGGDNLDSKYVLSCRVRTGRSIRGLSLPTWCTRAERKQVEEILVNALGRLSGNLKGKYFSLDKMTETEQNKLIDDHFLFDKPVSPLLTSAGMARDWPEARGIWHNNKKNFLVWVNEEDHMRIISMQKGANMKEVFQRFCTGLQQVETLMKSDGHTFMWSEHLGYILTCPSNLGTGMRAGVHVKLPLVSQDKRFDSMLEQMRLQKRGTGGVDTASDNGIFDISNSDRLGCSEVELMQVVVDGITLLVKMEKLLEKGKSIDHLIP 4576
FPDLS H+N MAK LTPE+YA+ + TPSGFT+D VIQTGVDNPGHP+IMTVGCVAGDEESYE F DLFDP+IE R G+K +D HKTDL+ L+GGD+LD YVLS RVRTGRSIRG LP C+R ER+ +E++ V AL L G+L G+Y++L MTE EQ +LIDDHFLFDKPVSPLL ++GMARDWP+ARGIWHN+ K FLVWVNEEDH+R+ISMQKG NMKEVF RFCTGL Q+ETL KS + FMW+ HLGYILTCPSNLGTG+RAGVH+KLP + + ++F +L+++RLQKRGTGGVDTA+ G+FD+SN+DRLG SEVEL+Q+VVDG+ LL++ME+ LE+G++ID L+P
Sbjct: 20 FPDLSAHNNHMAKVLTPELYAELRAKSTPSGFTLDDVIQTGVDNPGHPYIMTVGCVAGDEESYEVFKDLFDPIIEDRHGGYKPSDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLAVEALSSLDGDLAGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWVNEEDHLRVISMQKGGNMKEVFTRFCTGLTQIETLFKSKDYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLPNLGKHEKFSEVLKRLRLQKRGTGGVDTAAVGGVFDVSNADRLGFSEVELVQMVVDGVKLLIEMEQRLEQGQAIDDLMP 378 HSP 2 Score: 509.605 bits (1311), Expect = 7.142e-164 Identity = 238/365 (65.21%), Postives = 279/365 (76.44%), Query Frame = 2
Query: 2348 KIRDDGSLNFPDLTKHNNWMAKCLTPDLYKKLYSLKTPNGVTIDDIIQTGVDNPGHPFIYTVGCVAGDEESYSVFSDFFDEVIYHRHNGYEKTAIHPTDLNPDNLIGGKNLDPKYVLSCRVRTGRSIRGLALPPFCSRAERRTVETILMGALQKLDGKFQGKYYPLDGMSEEDQNKLIDDHFLFDKPVSPLLTSAGMARDWPDSRGIWHNKDKNFLVWVNEEDHSRVISMETGGNMAAVFNRFCTGLKKVEANIKQNGREFMWNEHLGYVLTCPSNLGTGLRAGVHLKVPLLSKTKYFDSILAAYRLQKRGTGGVDTMSTDGTFDISNLDRLGTSEVQQVQAVVNGVECLIELEKALEQGVDIEN 3442
K+R FPDL+ HNN MAK LTP+LY +L + TP+G T+DD+IQTGVDNPGHP+I TVGCVAGDEESY VF D FD +I RH GY+ + H TDLNPDNL GG +LDP YVLS RVRTGRSIRG LPP CSR ERR +E + + AL LDG G+YY L M+E +Q +LIDDHFLFDKPVSPLL ++GMARDWPD+RGIWHN +K FLVWVNEEDH RVISM+ GGNM VF RFCTGL ++E K EFMWN HLGY+LTCPSNLGTGLRAGVH+K+P L K + F +L RLQKRGTGGVDT + G FD+SN DRLG SEV+ VQ VV+GV+ LIE+E+ LEQG I++
Sbjct: 11 KLRFPAEDEFPDLSAHNNHMAKVLTPELYAELRAKSTPSGFTLDDVIQTGVDNPGHPYIMTVGCVAGDEESYEVFKDLFDPIIEDRHGGYKPSDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLAVEALSSLDGDLAGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWVNEEDHLRVISMQKGGNMKEVFTRFCTGLTQIETLFKSKDYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLPNLGKHEKFSEVLKRLRLQKRGTGGVDTAAVGGVFDVSNADRLGFSEVELVQMVVDGVKLLIEMEQRLEQGQAIDD 375 HSP 3 Score: 496.893 bits (1278), Expect = 2.709e-159 Identity = 240/359 (66.85%), Postives = 289/359 (80.50%), Query Frame = 2
Query: 4640 DCFPDFSKHNNWMSRVMTKELYEQMIALKTPNGVTFNDVIQTGVDNPGHPFIMTVGCVAGDEESYETFKPFFDQVIKERHGGYTPDAKHKTDLNADNLKGGEDLDPEFVLSCRVRTGRSIRGLALPPVCTRAERRDVETIVAKGLSQLAGDFSGKYYPLTGMSDEDQNKLIDDHFLFDKPVSPLLTSAGMARDWPDSRGIWHNKDKNFLVWINEEDHIRVISMETSGNMAAVFRRFCTGLSQFEQNIKNNGHEFMWNEHLGFVLTCPSNLGTGIRAGVHVKLPLVSKQAEFDKILAKLRLQKRGTGGVDTASNDGTFDISNADRLGFSXXXXXXXXXXXXXXXXRMEKELMQGGDIASL 5716
D FPD S HNN M++V+T ELY ++ A TP+G T +DVIQTGVDNPGHP+IMTVGCVAGDEESYE FK FD +I++RHGGY P +HKTDLN DNL+GG+DLDP +VLS RVRTGRSIRG LPP C+R ERR +E + + LS L GD +G+YY L M++ +Q +LIDDHFLFDKPVSPLL ++GMARDWPD+RGIWHN +K FLVW+NEEDH+RVISM+ GNM VF RFCTGL+Q E K+ +EFMWN HLG++LTCPSNLGTG+RAGVH+KLP + K +F ++L +LRLQKRGTGGVDTA+ G FD+SNADRLGFSEVELVQ+VVDGV LL+ ME+ L QG I L
Sbjct: 18 DEFPDLSAHNNHMAKVLTPELYAELRAKSTPSGFTLDDVIQTGVDNPGHPYIMTVGCVAGDEESYEVFKDLFDPIIEDRHGGYKPSDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLAVEALSSLDGDLAGRYYALKSMTEAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWVNEEDHLRVISMQKGGNMKEVFTRFCTGLTQIETLFKSKDYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLPNLGKHEKFSEVLKRLRLQKRGTGGVDTAAVGGVFDVSNADRLGFSEVELVQMVVDGVKLLIEMEQRLEQGQAIDDL 376 The following BLAST results are available for this feature:
BLAST of TCONS_00007985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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