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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008192 ID=TCONS_00008192|Name=TCONS_00008192|organism=Clytia hemisphaerica|type=transcript|length=1481bpRun BLAST on NCBI protein sequence of TCONS_00008192-protein >TCONS_00008192-protein ID=TCONS_00008192-protein|Name=TCONS_00008192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp FDAKMKMKIFFCFVVSFFIVKAYEEFRGNQVLRIIPSNDVQLKVLKKWISRun BLAST on NCBI transcript from alignment at sc0000082:548991..569663- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008192 ID=TCONS_00008192|Name=TCONS_00008192|organism=Clytia hemisphaerica|type=transcript|length=20673bp|location=Sequence derived from alignment at sc0000082:548991..569663- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000082:548991..569663- >TCONS_00008192 ID=TCONS_00008192|Name=TCONS_00008192|organism=Clytia hemisphaerica|type=CDS|length=13950bp|location=Sequence derived from alignment at sc0000082:548991..569663- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008192 vs. Swiss-Prot (Human)
Match: CBPA2 (Carboxypeptidase A2 OS=Homo sapiens GN=CPA2 PE=1 SV=3) HSP 1 Score: 279.256 bits (713), Expect = 7.203e-88 Identity = 149/395 (37.72%), Postives = 229/395 (57.97%), Query Frame = 2
Query: 71 EEFRGNQVLRIIPSNDVQLKVLKKWISSNPL-VDLWKEPSAPGHVVDIHMPKGKISSFEKLLTAHGISYNIMVPDVEDLL---NEEELSNMKNSFYSSFDYNKYNRWSDIKMELQNLARSNRGIVSLFQVGRTYEGETMIGLKVTNGDGRSKPVVWIDGGIHAREWISPATVMYFMNKLLTNKADD-RVSRVLAKYDFYLMPVFNIDGYKYTFTNRSTRLWRKTRTKYKESKPPYKTCYGADPNRNWDSHWETGINASDNCTTDYYRGPFAGSEKCVANVQTFLRQLKNLTSYWNIHAFSQLVLTTWSWTSALSKDYPEIKRVGDVFAEAVSKRYGTHYKVGPPSRFLYPASGCSIDFAHDELKVVYSYGLELRDKGHYGFVLPANQIQPSGEET 1240
E F G+QVL I+PSN+ Q+K L + + L +D WK P+ PG + +P + + + L + GI+Y+IM+ DV+ LL NEE L N + +F++ Y+ +I E+ NL + G+VS +G ++E M LK + G KP +W+D GIHAREW++ AT ++ NK++++ D ++ +L D +L+PV N DGY F+ R+WRKTR+K S C G DPNRNWD+ + G AS N +D Y GP A SE V ++ F++ + ++ +H++SQL++ + + D+ E+ V A+++ +GT YKVGP +Y ASG SID+++D + YS+ ELRD G YGF+LPA QI P+ EET
Sbjct: 20 ETFVGDQVLEIVPSNEEQIKNLLQLEAQEHLQLDFWKSPTTPGETAHVRVPFVNVQAVKVFLESQGIAYSIMIEDVQVLLDKENEEMLFNRRRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGG--DKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGY--VFSQTKNRMWRKTRSKVSGS-----LCVGVDPNRNWDAGF-GGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFITLHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLRSLHGTKYKVGPICSVIYQASGGSIDWSYD-YGIKYSFAFELRDTGRYGFLLPARQILPTAEET 403 The following BLAST results are available for this feature:
BLAST of TCONS_00008192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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