TCONS_00008222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008222
Unique NameTCONS_00008222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008222 ID=TCONS_00008222|Name=TCONS_00008222|organism=Clytia hemisphaerica|type=transcript|length=274bp
TGACGTCACACAGTTTGATAATCTTCTGTGTAATTTGGTTGAACTTGCTG
TTGGGAAGTTGATCCCTGGGTCTGGCACTGCTCTCTTTTTCATAAGTAGT
TTTTACTCATTTAATGATAAGACCGCTTGGGATGAATGCAAAAAAGAAGC
CGAGATTCTCATCCAGGACAAGATTGACAAGTCTAAATTGCAGACCGTTG
AAAATTGGCATAGCTCAATGATACGTCGTGTTGATACTTGCTCTCATAAA
AGCGACGTaactttgaaaagaaat
Run BLAST on NCBI

transcript from alignment at sc0000082:108732..109005

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008222 ID=TCONS_00008222|Name=TCONS_00008222|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at sc0000082:108732..109005 (Clytia hemisphaerica)
atttcttttcaaagttACGTCGCTTTTATGAGAGCAAGTATCAACACGAC
GTATCATTGAGCTATGCCAATTTTCAACGGTCTGCAATTTAGACTTGTCA
ATCTTGTCCTGGATGAGAATCTCGGCTTCTTTTTTGCATTCATCCCAAGC
GGTCTTATCATTAAATGAGTAAAAACTACTTATGAAAAAGAGAGCAGTGC
CAGACCCAGGGATCAACTTCCCAACAGCAAGTTCAACCAAATTACACAGA
AGATTATCAAACTGTGTGACGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004616XLOC_004616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008222-exon-sc0000082-1491911889:108732..109005TCONS_00008222-exon-sc0000082-1491911889:108732..109005Clytia hemisphaericaexon
TCONS_00008222-exon-sc0000082-1510915933:108732..109005TCONS_00008222-exon-sc0000082-1510915933:108732..109005Clytia hemisphaericaexon
TCONS_00008222-exon-sc0000082-1575043694:108732..109005TCONS_00008222-exon-sc0000082-1575043694:108732..109005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:108732..109005 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.644988	1.80628	0	0.542913	0	13.8993	6.66212	10.0415	31.675	0	0.412323	37.5967	37.5539	1.55434	1.51631	5.52981	9.4962	13.8083	20.5393	0.73479	0	0.594779	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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