TCONS_00008240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008240
Unique NameTCONS_00008240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008240 ID=TCONS_00008240|Name=TCONS_00008240|organism=Clytia hemisphaerica|type=transcript|length=850bp
aaacaaataCAAAATAGTTAGAATAAATATTTGTCAGAAAAGACAACAAT
ACGGGGTAATACAAAATCGACACGCTGGCcatgtcaaagttttgaaaatt
tatattcaaaaaagatttgtagGTTTAAAATGCATATTTACAGCAAAATT
CAGGTAATGTATAAcagtaacaaaaaaatcaaaataaagaaaaatttgac
accATAGAAACGACACATTTAATCATCTCCAAAACGAAAAATGTTTAGGT
CTTTAGTCAGAACTGTCACCCAGGTTGATAAAAATAGCGTCTAAATTTAA
GCCAGAAACTGATATAACATCTCGCTCACCGAGACAGGGGACGCAGAAAT
GTTAACACATTTTTCCCCTTTTCACAGAGTAGCATTGTCAAAAAAACAAC
GTCGATAGAACAGTCTTAAATTGACCATCACAAGAAGTCATTTAAAATAT
CACTGCTGTACTTTTCCTGTATTTCCAAGAAAAAGTCAACATGTTCATGG
AGTTGATATCCATTGAAGGGCATTGTTCTCAATGTCAACAACAAGTTCTC
TTCTTGTGATTGTTGCAAAATATCTCTTTTGCTATGTCTAAACAAGGATA
ACATGAAATAAACATGAAAATCATGACCCATTGTCAAGCACATCACGATA
AAAAGTTGGATGTCTTGAAAGTTCAGGAAGTTTAGGAAGCATTGTTGTCT
CCATAATTGACAGATCTGTGATGGAGGGAGGCCGGAGATTCGAAAAGCTG
CAGAAACATGTGGTAGCTCTCTCTCCAGAATGTATTCGATCCAATGGAAT
AATTTGGCGTCAACGTGAAGTGCTTGTTCTTTTACCTAAACACATAAATG
Run BLAST on NCBI

transcript from alignment at sc0000082:596211..597060

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008240 ID=TCONS_00008240|Name=TCONS_00008240|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at sc0000082:596211..597060 (Clytia hemisphaerica)
CATTTATGTGTTTAGGTAAAAGAACAAGCACTTCACGTTGACGCCAAATT
ATTCCATTGGATCGAATACATTCTGGAGAGAGAGCTACCACATGTTTCTG
CAGCTTTTCGAATCTCCGGCCTCCCTCCATCACAGATCTGTCAATTATGG
AGACAACAATGCTTCCTAAACTTCCTGAACTTTCAAGACATCCAACTTTT
TATCGTGATGTGCTTGACAATGGGTCATGATTTTCATGTTTATTTCATGT
TATCCTTGTTTAGACATAGCAAAAGAGATATTTTGCAACAATCACAAGAA
GAGAACTTGTTGTTGACATTGAGAACAATGCCCTTCAATGGATATCAACT
CCATGAACATGTTGACTTTTTCTTGGAAATACAGGAAAAGTACAGCAGTG
ATATTTTAAATGACTTCTTGTGATGGTCAATTTAAGACTGTTCTATCGAC
GTTGTTTTTTTGACAATGCTACTCTGTGAAAAGGGGAAAAATGTGTTAAC
ATTTCTGCGTCCCCTGTCTCGGTGAGCGAGATGTTATATCAGTTTCTGGC
TTAAATTTAGACGCTATTTTTATCAACCTGGGTGACAGTTCTGACTAAAG
ACCTAAACATTTTTCGTTTTGGAGATGATTAAATGTGTCGTTTCTATggt
gtcaaatttttctttattttgatttttttgttactgTTATACATTACCTG
AATTTTGCTGTAAATATGCATTTTAAACctacaaatcttttttgaatata
aattttcaaaactttgacatgGCCAGCGTGTCGATTTTGTATTACCCCGT
ATTGTTGTCTTTTCTGACAAATATTTATTCTAACTATTTTGtatttgttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004634XLOC_004634Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008240-exon-sc0000082-1491911889:596211..597060TCONS_00008240-exon-sc0000082-1491911889:596211..597060Clytia hemisphaericaexon
TCONS_00008240-exon-sc0000082-1510915933:596211..597060TCONS_00008240-exon-sc0000082-1510915933:596211..597060Clytia hemisphaericaexon
TCONS_00008240-exon-sc0000082-1575043694:596211..597060TCONS_00008240-exon-sc0000082-1575043694:596211..597060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082supercontigsc0000082:596211..597060 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.9363	13.9249	7.2694	6.37625	15.3757	9.26	10.7448	10.1924	8.67509	10.5144	9.70088	7.59339	6.73621	5.96348	2.2314	3.03545	2.65915	3.36434	2.82411	2.52426	2.62214	3.83697	9.51905	7.38492	9.32959	13.2056	6.9821	7.37049	5.46739	5.82077
Blast
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BLAST of TCONS_00008240 vs. Swiss-Prot (Human)
Match: BROMI (Protein broad-minded OS=Homo sapiens GN=TBC1D32 PE=2 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 3.051e-21
Identity = 43/121 (35.54%), Postives = 80/121 (66.12%), Query Frame = -1 
Query:  434 HWIEYILERELPHVSAAFRISGLPPSQICQLWRQQCFLNFLNFQDIQLFIVMCLTMGHDFHVYFMLSLFRHSKRDILQQSQEENLLLTLRTMPFNGYQLHEHVDFFLEIQEKYSSDILNDF 796
            H+IE +L+ ELP V +AF +SG  PSQIC  W  QCF N+L++ +I  +I  C+ +G D+ VY  +++F+H ++DILQ +Q ++L + L+    +G+++ ++ ++   +++ Y + +L D 
Sbjct: 1129 HYIEMLLKAELPLVFSAFHMSGFAPSQICLQWITQCFWNYLDWIEICHYIATCVFLGPDYQVYICIAVFKHLQQDILQHTQTQDLQVFLKEEALHGFRVSDYFEYMEILEQNYRTVLLRDM 1249
The following BLAST results are available for this feature:
BLAST of TCONS_00008240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BROMI3.051e-2135.54Protein broad-minded OS=Homo sapiens GN=TBC1D32 PE... [more]
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