TCONS_00008251 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008251
Unique Name	TCONS_00008251
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1714

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000084:81576..87152+

transcript sequence

>TCONS_00008251 ID=TCONS_00008251|Name=TCONS_00008251|organism=Clytia hemisphaerica|type=transcript|length=1714bp
GNAAATCCAAGGAAAAACACTGCCCATCGACGGAGACTTTTTCTGTTACA
CACGTCACGAACCCATCGGAGTTGTCGGACAAATCATCCCATGGAACTTT
CCTATGTTGATGTTAGCCTGGAAAGCTGCCCCTGCACTAGCCGCTGGAAA
CTGTATTGTTATGAAACCAGCGGAACAAACACCGCTCACTGCGTTGTACA
CTGCTCAATTGATCATCGAGGCTGGATTTCCACCAGGTGTTTTCAACATT
GTTCCAGGCTATGGTCCAACAGCTGGAGCTGCCATTTCTGAACACATGGA
CATTGATAAAATAGCTTTCACTGGATCCACTGAGGTTGGAAAGATTGTTC
AGAAGGCAGCTGCTGATTCCAATCTAAAGAATGTTACACTTGAACTTGGG
GGTAAAAGCCCGCACGTCGTATTTGCCGATGCTGATCTCGAGCAAGCAGT
CGAATTGTGTCATTTCGGTTTATTTTTCAATATGGGTCAGTGCTGTATTG
CCGGTACACGAATTTTCGTACAAGACACAATTTATGATGAGTTTGTCAAG
CGATCTGTTGACCGTGCGCTCAAGAGAACGGTTGGAAGCCCATGGGATGA
AGGAAATGAGCAAGGGCCACAGATCGATTCGGAACAATTCAACAAGATTT
TAGGACTGATTGATACTGGAAAGAAAGAAGGAGCCAAGATGCATTGCGGT
GGTAATCGTCATGGTGACAAAGGATACTTCATTCAACCAACCGTCTTCTC
TGACGTCACAGATGATATGACCATTGCTAAAGAAGAGattttcggTCCAG
TTATGCAGATTATGAAATTCAGTACAATGGAAGAGCTTCTTGAACGTGTC
AACAAAACAATGTACGGCCTTGGTGGTGCTGTACAAACCTCTAGCCTGGA
TAATGCACTCACTGTTTCTCATGGAATACGGGCTGGTACCATCTGGGTGA
ATTCATACGATAACTTCGACTGTATTGCTCCTTTTGGAGGTTACAAAATG
TCTGGGGCAGGGCGTGAACTCGGTGAATATGGATTATCGCAATATTCAGA
AGTTAAAACGGTGATGATCAAAGTGCCAAAGAAGAACTCATAACTTGGTT
TGTATTTATGTAAAGAGACACCTGATCACTTAAGAATATTACTAACATCT
CTTTAAGCAGGGCTCAACTAAGAATTAACATTATGGAGGTAATATTTCTG
TTAAATAGTTCTCAAACTTATCAACTGTAAATCGTTAAAGGTAAATGACA
TCTTTATTACGTGTAAGCTCGTTGCACACGAGCGATAAATTTGGTTGCAC
CCTCCACACACTAACACATCttcttgtattttattttttataattttttt
tttaattttagtccCATCGTAGAATGTATAATTTATTGATCCGCGAATTT
AGaagaatataaaataaaaagtcggaAATTCTTAAAACAGAATTTTAAAA
TGTACATCATTTTTTTCCAGGACAGGAATGGGTTTTATTCCTGTAATTTC
TTTTAGATGAAAGTCTTCGGAAATAAATCTTGTTTTTATGTGActaaaaa
cttacaaaaaacGTTTTCGGTGAAGAGTCAGAATTAAAAGTGCTTTGTAT
GTCGTGAAAGTAATATTCAAACCGTCattctgatattttttttcaactaa
ATTTATGGACGAGTTTGAGTTCgagaatatttttaacattgatttattca
attttactttCCAA

Run BLAST on NCBI

transcript from alignment at sc0000084:81576..87152+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008251 ID=TCONS_00008251|Name=TCONS_00008251|organism=Clytia hemisphaerica|type=transcript|length=5577bp|location=Sequence derived from alignment at sc0000084:81576..87152+ (Clytia hemisphaerica)
GNAAATCCAAGGAAAAACACTGCCCATCGGTAAGACGACCAGTCTCTTGT
AATCGTCTGACTAACAACATTACACAAATCTGAGAAAGTCTCGAGGAATA
GTTCGGGCTTATTTATATTACTTTATATTACTACCATTCGGAAATGACAT
AAAGAATAGCGTTTTCGGCAGCGATATTGGAAACGCCAATctcaaaaact
ttaatttttccCATTTGAGCTAAAATGACGCCAAAAACTGTTTTATGGAG
CTTCAGGTGAATGGCCGAAGAATCTTTCATAATTCCGCCCTTTGATCACG
TTACTaggcttttttaaatttgaatatctATACTTCTAATCTATCTGTAA
TCCGAAGAAATTCTTtgccccttgaagatcgaattagagagattcaACTG
TATTATTTCACTCTTTAACAGACGGAGACTTTTTCTGTTACACACGTCAC
GAACCCATCGGAGTTGTCGGACAAATCATCCCATGGAACTTTCCTATGTT
GATGTTAGCCTGGAAAGCTGCCCCTGCACTAGCCGCTGGAAACTGTATTG
TTATGAAACCAGCGGAACAAACACCGCTCACTGCGTTGTACACTGCTCAA
TTGATCATCGAGGTAAGATATCTATACCATGATNAAACACCGCTCACTGC
GTTGTACACTGCTCAATTGATCATCGAGGTGAGATATCTATACCATGATG
TTCGTTTGTTATTTTGGTGAAACCATGGAAAACTGAAACCCTTGAAGTAA
TTTTGTCGGTTTCCTTTTCTACTGCGACAATTAGTGTTATTTCACCTcac
tttcaatattttcaagcaATGTCCTAAATTGCTGCATTTGCCGAATTCGA
CTTGTAAAAATCGAACCAAGTTTTGCCTGTTATTTCAGTCATTTCCCTCT
TAAACAAGTCACCAATTCAATCCTTCTttcgaacgaaaaaataaattccA
GTAAGAAAATCGTTGTCAACGCTCCTAAGGAGTGCTCCCTTATAGAACAC
CCCTTTGTATTTCCGCTCGTTTATCACTAGGCTGGATTTCCACCAGGTGT
TTTCAACATTGTTCCAGGCTATGGTCCAACAGCTGGAGCTGCCATTTCTG
AACACATGGACATTGATAAAATAGCTTTCACTGGATCCACTGAGGTATAA
AGTTGTTCCATAAACCCTTACTAAGGAGAATGGGTCAGAGTTTTTCCAGT
AGGATGGATATTAAATGTcagaagtcgttgcattgacttTTGACGTCATT
TCTCCCTTGAAAACTTAACCCAATCCCTTCATAACGTTAGGCTTGATAAG
TGTTTTTTGGAAGCGTTATGAAATTTGATGGATCCACTGTAGATTTGTTA
ACGTATGTAAAATCAAGGTCAAAGACGTGAGACTGGACTTCTGTGATATT
TGGTGTCAAAAAGAGTACAGAATTGACgttttcattgtattttatttttt
ggagtTACATCGAGAAATCGATAAAGTCCACTAAAAAGTCAATTTTATCG
TTTTCAATGATGATTATAATGCCGATTTTTAGCTGgcatttttgataata
ttaGGTTGGAAAGATTGTTCAGAAGGCAGCTGCTGATTCCAATCTAAAGA
ATGTTACACTTGAACTTGGGGGTAAAAGGTATCATGTATAAAGAAtaatt
tcatttaaatttttcatctaTTTTTCCAATCATGCTTCGTTTCATTTGCA
ACTCTCGTCACTTCGAATCTTGAATGTCAAATTATAGAGTGTATTTTACT
AGGGTTTCATATTGGCAGGAACAGGCTCAGAAattggttcgaattataga
aaaattcgaTTAATAGAAGAGTCCATTGTACCTCCTTTATAAGCTGAAGT
TTTAAACGGTCAACTTTCTGCCTTTCTTTCCCTCATTTTTGACGGAAGTT
GAGCATTCTAAGTCAATGCTATCTTTTCTTTCGATACTTTTTTCATATAA
GGCTTCTTGTTGTCGACTTTTCGTTCACATTCTTCCTTCCTTCACGTCTA
ACAGTGGATTGTAAGGAAGGTCTAATAGTGGAAGATTTTTGCTTAGTTTC
CATCTTATTTTTCTTACTCATCATGCGACCGTAGTGCAATGGTaaagcat
ccggctacggtgcgcaaggttgtgggtccAACcctcagccgggtcatacc
aaagatttccaaaatggtacttgatgcctctctgcttggtgCTCAGCAAT
tgagagaaggatcaagggtaagtggaacaatccagagagagagagagtgg
tgccctcccctaccttcgggtagatctatcgaaagaggagccttcgggtc
gcctccgactgcggtcgcagacttattTACTTTCTTACTCGTGTAATTTT
TTAGCCCGCACGTCGTATTTGCCGATGCTGATCTCGAGCAAGCAGTCGAA
TTGTGTCATTTCGGTTTATTTTTCAATATGGGTCAGTGCTGTATTGCCGG
TACACGAATTTTCGTACAAGACACAATTTATGATGAGTTTGTCAAGCGAT
CTGTTGACCGTGCGCTCAAGAGAACGGTTGGAAGCCCATGGGATGAAGGA
AATGAGCAAGGGCCACAGGTAAGGCTTGATGGGAAATTACTATCTGGACT
ACGAATTGTGAAGTCAAACCCGGCGTAAGATATTCGAGATGCTTCCCCTT
CCCTTGTTACAAGACAAAAATCTTTCCTTGAGTCACTCCGTAGACATTTC
ACATATAAAATGACAATATGAGATGGCCAAAAACCGAAACTTTTTCAAGT
TAAACTACAGAACTTGTGCCATAATCGAAGCAATTATTTGATTTGTGTAA
GTAGTCGCCTCTATAAATTCGAACGTATGCTTCCACAATGGCGGATTTTC
CTTAAGTTAAGTAACTTTTgcaaaagctgaaaaaaaacttctatagATAG
TTTCTGAAAAAGATCTCCACTTGAAATCTATTCCACTTTCTTAACTTCCA
GATCGATTCGGAACAATTCAACAAGATTTTAGGACTGATTGATACTGGAA
AGAAAGAAGGAGCCAAGATGCATTGCGGTGGTAATCGTCATGGTGACAAA
GGATACTTCATTCAACCAACCGTCTTCTCTGACGTCACAGATGATATGAC
CATTGCTAAAGAAGAGGTAAGGAGAATGGGGCGAGTTAGGAAAGAGTTGA
GAATGAGtggtattagattttattttccttCATGGCGCATTGAATAACTG
TTAAGGATTTAAAATGAACCAGATGGTacttattttaaaaatcttttccc
ACTCCATTTCTCACTTTTTGTTACATATTATTTCCAGTAGACACACAAAA
TATAAATAGACCTTGCCcaattattcaaaaatatgCAGGCTAGTTGTTGT
CAATTCTTTAATTATTTTTACTATTCAAATACATTCAACTTTCAAATGAA
ATTCACGTGGTTGCGTCCTAGAAAAGTTGCCATGGATCCTAAGgtttggc
cccctactattattctattttaaagattttcggTCCAGTTATGCAGATTA
TGAAATTCAGTACAATGGAAGAGCTTCTTGAACGTGTCAACAAAACAATG
TACGGCCTTGGTGGTGCTGTACAAACCTCTAGCCTGGATAATGCACTCAC
TGTTTCTCATGGAATACGGGCTGGTACCATCTGGTAAGAAATGCGAATAA
TCGACTTGTTTAGTCTTTCGTTTCTTTTTATGCCCTTAATCTGCACGACA
CTACCCAGTTTGGAATTTTCACCAaaacacaggttgcaaaattagtctga
agacaaatcacgcttttactcgaaaattttatgtgcttgttaccagacat
ttatttctgattaaTCTGATCTTTTTGTTTCCAGGGTGAATTCATACGAT
AACTTCGACTGTATTGCTCCTTTTGGAGGTTACAAAATGTCTGGGGCAGG
GCGTGAACTGTAAGTTTAAATGATCTTTATCCTCTGATTGGGCATTCATA
CCAAGAAATTCTTCAACAAAGCAAGAAACTAATTTCCTTCATTTAGTTAA
AGATTCGAATCACGGAGGGTGTTTATACGGCTTTCAAACTGAAATTTAAT
TAACGGGTAATTATCAATTTTATCTTTCCCCCTTTAGCGGTGAATATGGA
TTATCGCAATATTCAGAAGTTAAAACGGTAAGTTCATCTTTGTGTTCATA
GgtcaaaaaaggtttgtttcGTTCCTGAAAGTCCTTAAAAAAGTCTCACA
GAAACACGGATTTCATACTACCCGCCGCAAAAACGGTAATTTAAAGGCTC
CCAAATCTTAAGGTTTCACTTTTGCTTCCCTGGGAAGGTTTGAAGTttcc
attgacttccaagcccgaggggctagactcgagactcctggatgggaaat
gaatccactacaaacgctggattgaaagtaaaatctatcgctacaatcct
tcaagaaatatttgagacaaatgggaaattccccaggaagttttgaaacc
acaatcgatttgtaagtgctctaaagtaggttcgaagggtagagttttaa
ctctgagttttaacgctagacttaagactaatGACCTTATGAGcttagga
tccaaaagttcaaaaatggtccagtaaggctcagaatatagcctggaagt
ctgccaacccctcccaaattgaaatattcgattaagttaaagagatagcc
caaaatcgactttttcgcctgaactttaaatctcgaaaaacatcaaaata
accggaattctcaatatatttcttgaaagattgtagatttcaaaaaatgc
agtcctcaaaaacaaaggaaccgctagatacaatctgtcgtcatgattgc
ggcgcgttctaggcTTCAAACTTAATGGAAGATTCCACTCTAGCCACTTC
TTCTAGCCCAATAATCCCAATAGTCCCACCCTATAGTTTTCATAAAAGAC
CCgttttatatcatttttaccAGGTGATGATCAAAGTGCCAAAGAAGAAC
TCATAACTTGGTTTGTATTTATGTAAAGAGACACCTGATCACTTAAGAAT
ATTACTAACATCTCTTTAAGCAGGGCTCAACTAAGAATTAACATTATGGA
GGTAATATTTCTGTTAAATAGTTCTCAAACTTATCAACTGTAAATCGTTA
AAGGTAAATGACATCTTTATTACGTGTAAGCTCGTTGCACACGAGCGATA
AATTTGGTTGCACCCTCCACACACTAACACATCttcttgtattttatttt
ttataattttttttttaattttagtccCATCGTAGAATGTATAATTTATT
GATCCGCGAATTTAGaagaatataaaataaaaagtcggaAATTCTTAAAA
CAGAATTTTAAAATGTACATCATTTTTTTCCAGGACAGGAATGGGTTTTA
TTCCTGTAATTTCTTTTAGATGAAAGTCTTCGGAAATAAATCTTGTTTTT
ATGTGActaaaaacttacaaaaaacGTTTTCGGTGAAGAGTCAGAATTAA
AAGTGCTTTGTATGTCGTGAAAGTAATATTCAAACCGTCattctgatatt
ttttttcaactaaATTTATGGACGAGTTTGAGTTCgagaatatttttaac
attgatttattcaattttactttCCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004644	XLOC_004644	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000084	supercontig	sc0000084:81576..87152 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.31611	10.2214	3.67047	3.99444	1.41862	1.0476	0	0	36.9266	35.7284	42.9722	31.1738	66.7817	59.8655	60.4902	73.4333	50.1104	49.0314	70.4526	52.6778	58.3976	56.8432	56.1042	54.5526	0	1.44773	59.2268	65.6212	72.5488	61.0084

Blast

[Close]

BLAST of TCONS_00008251 vs. Swiss-Prot (Human)
Match: ALDH2 (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 506.523 bits (1303), Expect = 8.326e-174
Identity = 249/361 (68.98%), Postives = 291/361 (80.61%), Query Frame = 2

Query:    8 QGKTLPIDGDFFCYTRHEPIGVVGQIIPWNFXXXXXXXXXXXXXXXGNCIVMKPAEQTPLTALYTAQLIIEAGFPPGVFNIVPGYGPTAGAAISEHMDIDKIAFTGSTEVGKIVQKAAADSNLKNVTLELGGKSPHVVFADADLEQAVELCHFGLFFNMGQCCIAGTRIFVQDTIYDEFVKRSVDRALKRTVGSPWDEGNEQGPQIDSEQFNKILGLIDTGKKEGAKMHCGGNRHGDKGYFIQPTVFSDVTDDMTIAKEEIFGPVMQIMKFSTMEELLERVNKTMYGLGGAVQTSSLDNALTVSHGIRAGTIWVNSYDNFDCIAPFGGYKMSGAGRELGEYGLSQYSEVKTVMIKVPKKNS 1090
             GKT+PIDGDFF YTRHEP+GV GQIIPWNFP+LM AWK  PALA GN +VMK AEQTPLTALY A LI EAGFPPGV NIVPG+GPTAGAAI+ H D+DK+AFTGSTE+G+++Q AA  SNLK VTLELGGKSP+++ +DAD++ AVE  HF LFFN GQCC AG+R FVQ+ IYDEFV+RSV RA  R VG+P+D   EQGPQ+D  QF KILG I+TGK+EGAK+ CGG    D+GYFIQPTVF DV D MTIAKEEIFGPVMQI+KF T+EE++ R N + YGL  AV T  LD A  +S  ++AGT+WVN YD F   +PFGGYKMSG+GRELGEYGL  Y+EVKTV +KVP+KNS
Sbjct:  157 HGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS 517

The following BLAST results are available for this feature:

BLAST of TCONS_00008251 vs. Swiss-Prot (Human)

BLAST of TCONS_00008251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ALDH2	8.326e-174	68.98	Aldehyde dehydrogenase, mitochondrial OS=Homo sapi...	[more]

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TCONS_00008251 (transcript) - C. hemisphaerica