TCONS_00008273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008273
Unique NameTCONS_00008273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1915

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008273 ID=TCONS_00008273|Name=TCONS_00008273|organism=Clytia hemisphaerica|type=transcript|length=1915bp
GTTTTGCGTTATCTTCCGAATCCTGAACTGACCAAGATGATCAAAGTGAT
TCAAGAGAGGGATGACGTCTTACAAaatctggtcagtaaaatagaACGAG
ATTACGACATGGTGAATAAACCATCAAACTATATTGAAGCTTTATTAAGA
TCTAAAATGGAGAATAGTGATGCTGAAAATAATAATGTTGAAAATGGTGA
CAAAAAACAATTTGTAGATTTCACACGTGATCATTTGGAGATGAACGTCT
TTGATATGTTTTTGGCTGGAGTCGAAACGGTGGCAGTTTCCGCTACATGG
TCAATCCTGTTCCTCATTAAATGGCCGGAAGTACAAGAAAAATGCCACCA
GCACTTAGACAGCATTAAAGGACCCAAAACAGATGATGGTATACAAATGC
CAGTTAGACTAGAAGATAAACAACATCTTTCTTATTTCATGGCAGTGATT
TATGAGACTTTGAGATTGGCATCTACTCTAccttttggtgtttttcataA
AGCGAGAGAGAATACAACATTAAATGGTTTCAATATCGAaaaagGTACTC
CCTTCATGATCAATTTGTGGACCATCCATCACgatcctaaaaacttcaaa
gATGCTTTACAATTTAATCCAGACAGATTCCTTGATCAAGATGGCTCCCT
CCTCCCATCAAGTAAAATCAAGAATTTCCTCGCGTTCAGCGCGGGACCTC
GACAATGTATTGGGCAAACTATCGCTAAATCTGAGCTGTTCTTGTTCTTA
ACGAATTTCTTATATAATTTCAAGTTGGAGAATTCACCGTTGAATAAGGA
GCTAAGCACGAATGGAAACACTAAAGTCACGCATGCACCGAAACCGTTCA
ATGTATGTTTGAAACATCGCTGTTGATTGGTTGGTTCATTTAATTTTGAA
GAGGTTTGATTGGACAATCCATATTTTGTTGATTAGGTGTACAGTTAGTG
AATAATAAGAAAATTCAATCTCGTCTCTCAAAAAATTACATATTAAGATT
AACTTTTCCAAATAAATAATAACAGACTTACCATTGAACTCTAAATAAAT
CACTAGAATGGTTATCTCCATAGCAACTCCCTTGGAAAGGTCTAACCTGC
TCGTATCTTATTGACATCTTTTACTTGAAAAAGATTAAAGAGTAGCCAAA
TATTGTAGCCCAGAGCTGTAAAATTGATCGATTTTAGTTGTCTTCCCTAA
AAATATGCTCTTTCCAGTCTTAGATTTTAGAGTTCAATAAANTACTCCCT
TCATGATCAATTTGTGGACCATCCATCACgatcctaaaaacttcaaagAT
GCTTTACAATTTAATCCAGACAGATTCCTTGATCAAGATGGCTCCCTCCT
CCCATCAAGTAAAATCAAGAATTTCCTCGCGTTCAGCGCGGGACCTCGAC
AATGTATtggtcaaactattgctaaaTCTGAGCTGTTCTTGTTCTTAACG
AATTTCTTATATAATTTCAAGTTGGAGAATTCACCGTTGAATAAGGAGCT
AAGCACGAATGGAAACACTAAAGTCACGCATGCACCGAAACCGTTCAATG
TATGTTTGAAACATCGCTGTTGATTGGTTGGTTCATTTAATTTTGAAGAG
GTTTGATTGGACAATCCATATTTTGTTGATTAGGTGTACAGTTAGTGAAT
AATAAGAAAATTCAATCTCGTCTCTCAAAAAATTACATATTAAGATTAAC
TTTTCCAAATAAATAATAACAGACTTACCATTGAACTCTAAATAAATCAC
TAGAATGGTTATCTCCATAGCAACTCCCTTGGAAAGGTCTAACCTGCTCG
TATCTTATTGACATCTTTTACTTGAAAAAGATTAAATAGTAGCCAAATAT
TGTAGCCCAGAGTTGTAAAATTGATCGATTTTAGTTGTCTTCCCTAAAAA
TATGCTCTTTCCAGT
Run BLAST on NCBI

protein sequence of TCONS_00008273-protein

>TCONS_00008273-protein ID=TCONS_00008273-protein|Name=TCONS_00008273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
VLRYLPNPELTKMIKVIQERDDVLQNLVSKIERDYDMVNKPSNYIEALLR
SKMENSDAENNNVENGDKKQFVDFTRDHLEMNVFDMFLAGVETVAVSATW
SILFLIKWPEVQEKCHQHLDSIKGPKTDDGIQMPVRLEDKQHLSYFMAVI
YETLRLASTLPFGVFHKARENTTLNGFNIEKGTPFMINLWTIHHDPKNFK
DALQFNPDRFLDQDGSLLPSSKIKNFLAFSAGPRQCIGQTIAKSELFLFL
TNFLYNFKLENSPLNKELSTNGNTKVTHAPKPFNVCLKHRC
Run BLAST on NCBI

transcript from alignment at sc0000084:206746..209164+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008273 ID=TCONS_00008273|Name=TCONS_00008273|organism=Clytia hemisphaerica|type=transcript|length=2419bp|location=Sequence derived from alignment at sc0000084:206746..209164+ (Clytia hemisphaerica)
GTTTTGCGTTATCTTCCGAATCCTGAACTGACCAAGATGATCAAAGTGAT
TCAAGAGAGGGATGACGTCTTACAAaatctggtcagtaaaatagaACGAG
ATTACGACATGGTGAATAAACCATCAAACTATATTGAAGCTTTATTAAGA
TCTAAAATGGAGAATAGTGATGCTGAAAATAATAATGTTGAAAATGGTGA
CAAAAAACAATTTGTAGATTTCACACGTGATCATTTGGAGATGAACGTCT
TTGATATGTTTTTGGCTGGAGTCGAAACGGTGGCAGTTTCCGCTACATGG
TCAATCCTGTTCCTCATTAAATGGCCGGAAGTACAAGAAAAATGCCACCA
GCACTTAGACAGCATTAAAGGACCCAAAACAGATGATGGTATACAAATGC
CAGTTAGACTAGAAGATAAACAACATCTTTCTTATTTCATGGCAGTGATT
TATGAGACTTTGAGATTGGCATCTACTCTAccttttggtgtttttcataA
AGCGAGAGAGAATACAACATTAAATGGTTTCAATATCGAaaaaggtatgt
ttttatttggaAAAGATTCTTATTCTAAGAACCTTCCTGTTCGATATTCG
GTAAGATAAAAAATCCATAGTTCTAGTAAACAACTTAAGGAATTCATTTC
GTTCTCATAACTTTCTCAGACTCCTTCTGCAAAAGACATCAACAATACAT
TAAAAAACATCATCACATTTCCTTAAGGGAAATAATTTTAGCGGtcggaa
aaaaatcgaaaaaatcacatttcgagggaattaattttcgcagttttACC
CTATTTTGGGCACATTCTTTTATCACCCAAGggattttcacaatttttga
atttgtaaTTCGTGGgttctaattttcgcggtttttccgaaagaagaaaa
tttgttATTCCCTTAAAGTAGTTAATAATTAATCTGACTTATATATGGGT
GAATTCTTTATGTGGTTACGATTGAAGAAGTGTTTTGAAAAGGttaaaaa
tgtatttcaaaacttgtatatcaaaattctttttttttcatccaaaagGT
ACTCCCTTCATGATCAATTTGTGGACCATCCATCACgatcctaaaaactt
caaagATGCTTTACAATTTAATCCAGACAGATTCCTTGATCAAGATGGCT
CCCTCCTCCCATCAAGTAAAATCAAGAATTTCCTCGCGTTCAGCGCGGGA
CCTCGACAATGTATTGGGCAAACTATCGCTAAATCTGAGCTGTTCTTGTT
CTTAACGAATTTCTTATATAATTTCAAGTTGGAGAATTCACCGTTGAATA
AGGAGCTAAGCACGAATGGAAACACTAAAGTCACGCATGCACCGAAACCG
TTCAATGTATGTTTGAAACATCGCTGTTGATTGGTTGGTTCATTTAATTT
TGAAGAGGTTTGATTGGACAATCCATATTTTGTTGATTAGGTGTACAGTT
AGTGAATAATAAGAAAATTCAATCTCGTCTCTCAAAAAATTACATATTAA
GATTAACTTTTCCAAATAAATAATAACAGACTTACCATTGAACTCTAAAT
AAATCACTAGAATGGTTATCTCCATAGCAACTCCCTTGGAAAGGTCTAAC
CTGCTCGTATCTTATTGACATCTTTTACTTGAAAAAGATTAAAGAGTAGC
CAAATATTGTAGCCCAGAGCTGTAAAATTGATCGATTTTAGTTGTCTTCC
CTAAAAATATGCTCTTTCCAGTCTTAGATTTTAGAGTTCAATAAANTACT
CCCTTCATGATCAATTTGTGGACCATCCATCACgatcctaaaaacttcaa
agATGCTTTACAATTTAATCCAGACAGATTCCTTGATCAAGATGGCTCCC
TCCTCCCATCAAGTAAAATCAAGAATTTCCTCGCGTTCAGCGCGGGACCT
CGACAATGTATtggtcaaactattgctaaaTCTGAGCTGTTCTTGTTCTT
AACGAATTTCTTATATAATTTCAAGTTGGAGAATTCACCGTTGAATAAGG
AGCTAAGCACGAATGGAAACACTAAAGTCACGCATGCACCGAAACCGTTC
AATGTATGTTTGAAACATCGCTGTTGATTGGTTGGTTCATTTAATTTTGA
AGAGGTTTGATTGGACAATCCATATTTTGTTGATTAGGTGTACAGTTAGT
GAATAATAAGAAAATTCAATCTCGTCTCTCAAAAAATTACATATTAAGAT
TAACTTTTCCAAATAAATAATAACAGACTTACCATTGAACTCTAAATAAA
TCACTAGAATGGTTATCTCCATAGCAACTCCCTTGGAAAGGTCTAACCTG
CTCGTATCTTATTGACATCTTTTACTTGAAAAAGATTAAATAGTAGCCAA
ATATTGTAGCCCAGAGTTGTAAAATTGATCGATTTTAGTTGTCTTCCCTA
AAAATATGCTCTTTCCAGT

Coding sequence (CDS) from alignment at sc0000084:206746..209164+

>TCONS_00008273 ID=TCONS_00008273|Name=TCONS_00008273|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0000084:206746..209164+ (Clytia hemisphaerica)
GTTTTGCGTTATCTTCCGAATCCTGAACTGACCAAGATGATCAAAGTGAT
TCAAGAGAGGGATGACGTCTTACAAaatctggtcagtaaaatagaACGAG
ATTACGACATGGTGAATAAACCATCAAACTATATTGAAGCTTTATTAAGA
TCTAAAATGGAGAATAGTGATGCTGAAAATAATAATGTTGAAAATGGTGA
CAAAAAACAATTTGTAGATTTCACACGTGATCATTTGGAGATGAACGTCT
TTGATATGTTTTTGGCTGGAGTCGAAACGGTGGCAGTTTCCGCTACATGG
TCAATCCTGTTCCTCATTAAATGGCCGGAAGTACAAGAAAAATGCCACCA
GCACTTAGACAGCATTAAAGGACCCAAAACAGATGATGGTATACAAATGC
CAGTTAGACTAGAAGATAAACAACATCTTTCTTATTTCATGGCAGTGATT
TATGAGACTTTGAGATTGGCATCTACTCTAccttttggtgtttttcataA
AGCGAGAGAGAATACAACATTAAATGGTTTCAATATCGAaaaagGTACTC
CCTTCATGATCAATTTGTGGACCATCCATCACgatcctaaaaacttcaaa
gATGCTTTACAATTTAATCCAGACAGATTCCTTGATCAAGATGGCTCCCT
CCTCCCATCAAGTAAAATCAAGAATTTCCTCGCGTTCAGCGCGGGACCTC
GACAATGTATTGGGCAAACTATCGCTAAATCTGAGCTGTTCTTGTTCTTA
ACGAATTTCTTATATAATTTCAAGTTGGAGAATTCACCGTTGAATAAGGA
GCTAAGCACGAATGGAAACACTAAAGTCACGCATGCACCGAAACCGTTCA
ATGTATGTTTGAAACATCGCTGTTGAGTTTTGCGTTATCTTCCGAATCCT
GAACTGACCAAGATGATCAAAGTGATTCAAGAGAGGGATGACGTCTTACA
AaatctggtcagtaaaatagaACGAGATTACGACATGGTGAATAAACCAT
CAAACTATATTGAAGCTTTATTAAGATCTAAAATGGAGAATAGTGATGCT
GAAAATAATAATGTTGAAAATGGTGACAAAAAACAATTTGTAGATTTCAC
ACGTGATCATTTGGAGATGAACGTCTTTGATATGTTTTTGGCTGGAGTCG
AAACGGTGGCAGTTTCCGCTACATGGTCAATCCTGTTCCTCATTAAATGG
CCGGAAGTACAAGAAAAATGCCACCAGCACTTAGACAGCATTAAAGGACC
CAAAACAGATGATGGTATACAAATGCCAGTTAGACTAGAAGATAAACAAC
ATCTTTCTTATTTCATGGCAGTGATTTATGAGACTTTGAGATTGGCATCT
ACTCTAccttttggtgtttttcataAAGCGAGAGAGAATACAACATTAAA
TGGTTTCAATATCGAaaaagGTACTCCCTTCATGATCAATTTGTGGACCA
TCCATCACgatcctaaaaacttcaaagATGCTTTACAATTTAATCCAGAC
AGATTCCTTGATCAAGATGGCTCCCTCCTCCCATCAAGTAAAATCAAGAA
TTTCCTCGCGTTCAGCGCGGGACCTCGACAATGTATTGGGCAAACTATCG
CTAAATCTGAGCTGTTCTTGTTCTTAACGAATTTCTTATATAATTTCAAG
TTGGAGAATTCACCGTTGAATAAGGAGCTAAGCACGAATGGAAACACTAA
AGTCACGCATGCACCGAAACCGTTCAATGTATGTTTGAAACATCGCTGTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004649XLOC_004649Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008273-proteinTCONS_00008273-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008273-exon-sc0000084-1491911889:206746..207289TCONS_00008273-exon-sc0000084-1491911889:206746..207289Clytia hemisphaericaexon
TCONS_00008273-exon-sc0000084-1510915933:206746..207289TCONS_00008273-exon-sc0000084-1510915933:206746..207289Clytia hemisphaericaexon
TCONS_00008273-exon-sc0000084-1575043694:206746..207289TCONS_00008273-exon-sc0000084-1575043694:206746..207289Clytia hemisphaericaexon
TCONS_00008273-exon-sc0000084-1491911889:207794..209164TCONS_00008273-exon-sc0000084-1491911889:207794..209164Clytia hemisphaericaexon
TCONS_00008273-exon-sc0000084-1510915933:207794..209164TCONS_00008273-exon-sc0000084-1510915933:207794..209164Clytia hemisphaericaexon
TCONS_00008273-exon-sc0000084-1575043694:207794..209164TCONS_00008273-exon-sc0000084-1575043694:207794..209164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:206746..209164 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0207959	0	0	0	0	0	0.950524	1.35526	2.37147	1.97954	1.09861	1.2551	3.92643	3.32217	0.115852	0.313253	0.162586	0.36667	4.08961	6.1641	0.345764	0.429085	0.710694	1.26701	0	0.362603	0.0742936	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002401Cyt_P450_E_grp-I
IPR001128Cyt_P450
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
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BLAST of TCONS_00008273 vs. Swiss-Prot (Human)
Match: CP1A2 (Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 5.641e-35
Identity = 81/245 (33.06%), Postives = 123/245 (50.20%), Query Frame = 1 
Query:    1 VLRYLPNPELTKMIKVIQERDDVLQNLVSKIERDYDMVNKPSNYIEALLRSKMENSDAENNNVENGDKKQFVDFTRDHLEMNVFDMFLAGVETVAVSATWSILFLIKWPEVQEKCHQHLDSIKGPKTDDGIQMPVRLEDKQHLSYFMAVIYETLRLASTLPFGVFHKARENTTLNGFNIEKGTPFMINLWTIHHDPKNFKDALQFNPDRFLDQDGSLLPSSKIKNFLAFSAGPRQCIGQTIAKSE 735
            +LRYLPNP L +     Q     LQ  V +  +D+D  N   +   AL +   +   A  N +        V+           D+F AG +TV  + +WS+++L+  PE+Q K  + LD++ G +         RL D+  L Y  A I ET R +S LPF + H    +TTLNGF I K     +N W ++HDP+ ++D  +F P+RFL  DG+ +     +  + F  G R+CIG+ +AK E
Sbjct:  241 ILRYLPNPALQRFKAFNQRFLWFLQKTVQEHYQDFDK-NSVRDITGALFKHSKKGPRASGNLIPQEKIVNLVN-----------DIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTVIGRERRP------RLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEVLAKWE 467
The following BLAST results are available for this feature:
BLAST of TCONS_00008273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP1A25.641e-3533.06Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1... [more]
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