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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008375 ID=TCONS_00008375|Name=TCONS_00008375|organism=Clytia hemisphaerica|type=transcript|length=1621bp
CGGGGTTAATctgtaaaggcttggggacatgagaagtttttttttcgtgt
tggtgcaatgcaacatgctccatcccaccaacacaagaaaaaaagtgcgt
gtcccatggtttctttttttgtttcatgggacaaaataTGAGGGAAATAC
CCCAAAAACaagctgattttgtccctgggacaatggagcaaaattgattc
gaatcaattctgctccattgtcccagggacaaaagtgagatttcacttta
aTTGGTAAAAAGAGAAAtagggtggagacacgagaaagcgtttcaagttg
gtgggatggagcatgttgcattgcaacAACGTGAAAGAAACTTCtagtgt
ccccaagccttaaataacaaacaaaatgCATCTTCAACGAAATGAACGTT
TTTATACGTAATATATTAAAGGTAAAAAATgttaattgtttttaaaaacg
cCAAGAATAACTACTGCATATGAATAACGATCATAATACCCAGACATCTC
GTTAATTGTCGTACTTCCTCCGTCATCACcttgatgattttttcctatTT
GAATTTCGATTAAACGTGAGAGTTCAGGATGACGAGGATGTAGAAGTATG
AACTTGGCCGTCTCCAAATTTCTTTTCTCAATGTTTTCAATAACAAAACA
TGAGTTGGATCTAGATTGCTGAGAAATACTCCCTGTTGAAATCTGTAACG
TCAGGCTGTTATTTTGGATTCCATCCTTATTCATTACGAACATGAATTTG
GTAGTGGCGTTTGAAACGTATTCAGGCTCCTTCGGCTTAAGTGAGACTAG
CGATTTTTGAAACCAGCTTTCGTATGAGCCATtactttcaatattttctc
GAGCATTATCACCGAGAAAAGATTGTGCTATCCAAAGTAAATTGACGCTT
TTAATTTCCATGTTTGGTGGTTCgggaattttctttttctcgaacgggct
tttcacatttttcatttcatcaattAACTTTACCATTTGGTTTGATATTT
CATCCAGTTTAGTTGAATTTCCTTCGTCCGTGATCTCAGTTCGATCTCGA
TTCATCTTTTCTTGGGCGTTGATATGTCCTGCGGTATTACTTTTCATTGT
CATAGATTTTTCCTTGTTTGAAGCTTCTAGGTCTTTGATCTTTGCTTCCA
ATGATCcgattttgtcattcaatttatCCACTTCACCAACTTTTTTGGTC
AATGCTTGAACCTGAAATTCCATTTttgaaatgacgtcatcatcagaTCC
ACCAGACTGGGTGTTCGCAGAACCACATTTCGTTTTCAGCATTTCAATCT
CATGTTTAAGagaaagattttctttctcCAAATCGAACACAGATTTGTTA
GATTCACCACTATGTTGTGCTTTGAGAcgtaaaatctcattttcatgTCT
CAATGACAAATTTTCGAACTTTAGTGCTTGTAACAGCTTTTCACAATCAT
CCTTCATTTTTGCGTTTTCCGCTTTTAGTTTTTCGTTCTCACGTTGGAaa
tcttttgttgaaatttcCCGACCTTCCATTCTGTGTGGTGCTgaattcat
gtttttattttcgttgAGCAAAACTATCCACGTTTTAAGAACAGTGTAGT
GAATGAATGAGTGAAATGACA Run BLAST on NCBI protein sequence of TCONS_00008375-protein >TCONS_00008375-protein ID=TCONS_00008375-protein|Name=TCONS_00008375-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
SFHSFIHYTVLKTWIVLLNENKNMNSAPHRMEGREISTKDFQRENEKLKA
ENAKMKDDCEKLLQALKFENLSLRHENEILRLKAQHSGESNKSVFDLEKE
NLSLKHEIEMLKTKCGSANTQSGGSDDDVISKMEFQVQALTKKVGEVDKL
NDKIGSLEAKIKDLEASNKEKSMTMKSNTAGHINAQEKMNRDRTEITDEG
NSTKLDEISNQMVKLIDEMKNVKSPFEKKKIPEPPNMEIKSVNLLWIAQS
FLGDNARENIESNGSYESWFQKSLVSLKPKEPEYVSNATTKFMFVMNKDG
IQNNSLTLQISTGSISQQSRSNSCFVIENIEKRNLETAKFILLHPRHPEL
SRLIEIQIGKNHQGDDGGSTTINEMSGYYDRYSYAVVILGVFKNN Run BLAST on NCBI transcript from alignment at sc0000084:644087..645707 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008375 ID=TCONS_00008375|Name=TCONS_00008375|organism=Clytia hemisphaerica|type=transcript|length=1621bp|location=Sequence derived from alignment at sc0000084:644087..645707 (Clytia hemisphaerica)
TGTCATTTCACTCATTCATTCACTACACTGTTCTTAAAACGTGGATAGTT
TTGCTcaacgaaaataaaaacatgaattcAGCACCACACAGAATGGAAGG
TCGGgaaatttcaacaaaagattTCCAACGTGAGAACGAAAAACTAAAAG
CGGAAAACGCAAAAATGAAGGATGATTGTGAAAAGCTGTTACAAGCACTA
AAGTTCGAAAATTTGTCATTGAGAcatgaaaatgagattttacgTCTCAA
AGCACAACATAGTGGTGAATCTAACAAATCTGTGTTCGATTTGgagaaag
aaaatctttctCTTAAACATGAGATTGAAATGCTGAAAACGAAATGTGGT
TCTGCGAACACCCAGTCTGGTGGAtctgatgatgacgtcatttcaaAAAT
GGAATTTCAGGTTCAAGCATTGACCAAAAAAGTTGGTGAAGTGGataaat
tgaatgacaaaatcgGATCATTGGAAGCAAAGATCAAAGACCTAGAAGCT
TCAAACAAGGAAAAATCTATGACAATGAAAAGTAATACCGCAGGACATAT
CAACGCCCAAGAAAAGATGAATCGAGATCGAACTGAGATCACGGACGAAG
GAAATTCAACTAAACTGGATGAAATATCAAACCAAATGGTAAAGTTaatt
gatgaaatgaaaaatgtgaaaagcccgttcgagaaaaagaaaattcccGA
ACCACCAAACATGGAAATTAAAAGCGTCAATTTACTTTGGATAGCACAAT
CTTTTCTCGGTGATAATGCTCgagaaaatattgaaagtaATGGCTCATAC
GAAAGCTGGTTTCAAAAATCGCTAGTCTCACTTAAGCCGAAGGAGCCTGA
ATACGTTTCAAACGCCACTACCAAATTCATGTTCGTAATGAATAAGGATG
GAATCCAAAATAACAGCCTGACGTTACAGATTTCAACAGGGAGTATTTCT
CAGCAATCTAGATCCAACTCATGTTTTGTTATTGAAAACATTGAGAAAAG
AAATTTGGAGACGGCCAAGTTCATACTTCTACATCCTCGTCATCCTGAAC
TCTCACGTTTAATCGAAATTCAAataggaaaaaatcatcaagGTGATGAC
GGAGGAAGTACGACAATTAACGAGATGTCTGGGTATTATGATCGTTATTC
ATATGCAGTAGTTATTCTTGgcgtttttaaaaacaattaacATTTTTTAC
CTTTAATATATTACGTATAAAAACGTTCATTTCGTTGAAGATGcattttg
tttgttatttaaggcttggggacactaGAAGTTTCTTTCACGTTgttgca
atgcaacatgctccatcccaccaacttgaaacgctttctcgtgtctccac
cctaTTTCTCTTTTTACCAAttaaagtgaaatctcacttttgtccctggg
acaatggagcagaattgattcgaatcaattttgctccattgtcccaggga
caaaatcagcttGTTTTTGGGGTATTTCCCTCAtattttgtcccatgaaa
caaaaaaagaaaccatgggacacgcactttttttcttgtgttggtgggat
ggagcatgttgcattgcaccaacacgaaaaaaaaacttctcatgtcccca
agcctttacagATTAACCCCG Coding sequence (CDS) from alignment at sc0000084:644087..645707 >TCONS_00008375 ID=TCONS_00008375|Name=TCONS_00008375|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000084:644087..645707 (Clytia hemisphaerica)
TCATTTCACTCATTCATTCACTACACTGTTCTTAAAACGTGGATAGTTTT
GCTcaacgaaaataaaaacatgaattcAGCACCACACAGAATGGAAGGTC
GGgaaatttcaacaaaagattTCCAACGTGAGAACGAAAAACTAAAAGCG
GAAAACGCAAAAATGAAGGATGATTGTGAAAAGCTGTTACAAGCACTAAA
GTTCGAAAATTTGTCATTGAGAcatgaaaatgagattttacgTCTCAAAG
CACAACATAGTGGTGAATCTAACAAATCTGTGTTCGATTTGgagaaagaa
aatctttctCTTAAACATGAGATTGAAATGCTGAAAACGAAATGTGGTTC
TGCGAACACCCAGTCTGGTGGAtctgatgatgacgtcatttcaaAAATGG
AATTTCAGGTTCAAGCATTGACCAAAAAAGTTGGTGAAGTGGataaattg
aatgacaaaatcgGATCATTGGAAGCAAAGATCAAAGACCTAGAAGCTTC
AAACAAGGAAAAATCTATGACAATGAAAAGTAATACCGCAGGACATATCA
ACGCCCAAGAAAAGATGAATCGAGATCGAACTGAGATCACGGACGAAGGA
AATTCAACTAAACTGGATGAAATATCAAACCAAATGGTAAAGTTaattga
tgaaatgaaaaatgtgaaaagcccgttcgagaaaaagaaaattcccGAAC
CACCAAACATGGAAATTAAAAGCGTCAATTTACTTTGGATAGCACAATCT
TTTCTCGGTGATAATGCTCgagaaaatattgaaagtaATGGCTCATACGA
AAGCTGGTTTCAAAAATCGCTAGTCTCACTTAAGCCGAAGGAGCCTGAAT
ACGTTTCAAACGCCACTACCAAATTCATGTTCGTAATGAATAAGGATGGA
ATCCAAAATAACAGCCTGACGTTACAGATTTCAACAGGGAGTATTTCTCA
GCAATCTAGATCCAACTCATGTTTTGTTATTGAAAACATTGAGAAAAGAA
ATTTGGAGACGGCCAAGTTCATACTTCTACATCCTCGTCATCCTGAACTC
TCACGTTTAATCGAAATTCAAataggaaaaaatcatcaagGTGATGACGG
AGGAAGTACGACAATTAACGAGATGTCTGGGTATTATGATCGTTATTCAT
ATGCAGTAGTTATTCTTGgcgtttttaaaaacaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008375-exon-sc0000084-1491911889:644087..645707 | TCONS_00008375-exon-sc0000084-1491911889:644087..645707 | Clytia hemisphaerica | exon |
| TCONS_00008375-exon-sc0000084-1510915933:644087..645707 | TCONS_00008375-exon-sc0000084-1510915933:644087..645707 | Clytia hemisphaerica | exon |
| TCONS_00008375-exon-sc0000084-1575043694:644087..645707 | TCONS_00008375-exon-sc0000084-1575043694:644087..645707 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000084 | supercontig | sc0000084:644087..645707 . |
Blast
The following BLAST results are available for this feature:
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