TCONS_00008381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008381
Unique NameTCONS_00008381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008381 ID=TCONS_00008381|Name=TCONS_00008381|organism=Clytia hemisphaerica|type=transcript|length=941bp
GGGCGAACTACCATCCTTTCCTGAGATCAAATTACATTTGCATTTCGATA
TAATGAGTGACTGATCTAAAAGCTTTTTTCTTATTAACAGTGAAAACAGT
TGTGAGTTGAGAAAAAAGATACAGACAGAGAAGGAAGATGGCTAACAGAC
CTGTAGGATATGGATTCACAGCTGAAACTACTAAAAGGATTGATGACAAA
TATGATGCCGAGAGTGAGCGAGAAGCTATCGATTGGATCAACGCTGTGTT
AGGTGGTCAAGAAGTCTCCTATGGAAAAGATAATGTTCAGCATGCCCTCA
AAGATGGCGTCATCCTTTGCAAagtGATGAATATTTTACAACCTGGAATT
ATCGGAAAAATTCATCCTGCCGAATCTAACAGTTTCAAAAAAATGGAGAA
CATCGCAAATTTTTTAACGGCAGCCGAGAAATATGGTTGTCATAGAGGAG
ATCTTTTTCAATCAGTATACTTGACTGACGGGCAAAATATGCCAGCGGTT
ATCGGTGGAATCCATGCCATCGGACGAAAGGCACAAACGAATGGATTCAA
AGGACCATTGTTGGGACCCAAAGAATCTTCAGCCAACCCTCGCGAATTTT
CTGAAGAGCAATTACTCCATGGGCGTGTCCATGGATACTAAGTAATGATA
CTTCTCTACTCTTTTTCTATACAACTTCCACTCTTCACTTTCTTTCCAAC
TCACATTCTCAAGCATTCAATCACTACAGCTCAATCATATCATCATAGCA
CAGAAACATTTTTATAGCTCACTATCTGCCACCATGAACATGCTGCCACC
GTACTGAACAAATTTCAAAACCTGTCCTCGTCTTTCTTATTTCACAATTA
TCACTTTTAATCCATTTGtatattttaatgaatttttataACATAGAAAC
TAGAAAGAAACTTATTTATATACATAAACATAAATAGCAAC
Run BLAST on NCBI

transcript from alignment at sc0000085:80542..83946+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008381 ID=TCONS_00008381|Name=TCONS_00008381|organism=Clytia hemisphaerica|type=transcript|length=3405bp|location=Sequence derived from alignment at sc0000085:80542..83946+ (Clytia hemisphaerica)
GGGCGAACTACCATCCTTTCCTGAGATCAAATTACATTTGCATTTCGATA
TAATGAGTGACTGATCTAAAAGCTTTTTTCTTATTAACAGTGAAAACAGT
TGTGAGTTGAGAAAAAAGATACAGACAGAGAAGGAAGATGGCTAACAGAC
CTGTAGGATATGGATTCACAGCTGAAACTACTAAAAGGGTAAGCGAAAAA
ACAGGTAGCAAATATTCGAATCCCTCCATTCATGCGTTGTTCCTTTTAGC
ATTATGCACTGGTTATGATAtcatttaagaaaattttagacTATTAATCT
ATCTGTTCTATATGACATGTACTTACATTTATAAAAATGACTGTCCATTA
AAACGATGGAAATATCTTTCTGTTAACTATCCCCTTAGAAGGCATTTATT
CAAAAAGCACTTTTCGTAGTTCATCGTAATTAAAATCACAAACTTCTAAA
CTACTGTCTTGCAGTAATTCAGTTATTGAAAccgcaatttttttcttttg
cggAAGCAAATTAAATGAGGTGATCATTACAAGCAAGCTCACGGTTATCT
AATCATcacaagaaaaaataattttgtcgaTAAAATGAAGAAATCAACCA
TACGAACCCAAAGCCCGAATTCACTTAATTAACCCATTCCGTTCAGTTGA
CATGGTGCCCCTTTAATATGATAAAACAcgaaaaagttttgaattttaaa
cagCATTAATGCACGTTTGAAAGATTactttcaaaaatcaaactaGCCTA
TAGTCTAactctggctgaactttgctttttgatcattttttaagACGCTG
AGTCCAGCGAACTAGCACTTGACGAGATTGCCATATTGAAAGAATCCAGT
CTATATAAAAAGCTTTCAGTGGACTCTGCGGGTTAAAATCACACGAGAAT
GCGAGCTTCCTACACAGAAGACGAGAATGGAATGGTTTTGTccattttga
tcaaattttcttaaagttaattttaaccaaaatgatacattgaatttgaa
tatggggggtgggggatataacaattttcagtgatttaccccctggacaa
agtgacttttggccccccggacaacgggttttacccccccccccggacaa
gcatcagttgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcccccccccccggacaagacaaattttgatgatttttcgctaacc
ctcggacaatatatcctccatccccatgtacggacattgtctggaagagc
ccattttcgACAATTAACACGTTAAATGGTTTCTTTCAGATTGATGACAA
ATATGATGCCGAGAGTGAGCGAGAAGCTATCGATTGGATCAACGCTGTGT
TAGGTGGTCAAGAAGTCTCCTATGGAAAAGATAATGTTCAGCATGCCCTC
AAAGATGGCGTCATCCTTTGCAAGTAAGCTTTTGAAAGGGATGGAGAATG
ATAGTGCTAAGACTATGGATGTTTGATGGGGCTGATAGTTCACTATAATC
CCCCCCCCAGAGAAAGTCTAAACGACCAGGAAAGTCTCAAAAATATGCTG
GAAATGAACAGAGCATCATAGAAGAAAACTTTCTGCAAAAAGCTTATAGA
ATTGTTTGACCTTTCCAGAGCCTAAGCTTATagttctttttaattttcaa
aataatttcgcAAAAAAGAACAAGGGGGCATTATTATATTGAGAACCATC
AAGAAGAAGATGTAAACTAAGTTTATCCATCAGATTTTGCAACAAGGTTa
tgaacattttattttttcagagtGATGAATATTTTACAACCTGGAATTAT
CGGAAAAATTCATCCTGCCGAATCTAACAGTTTCAAAAAAGTAAGTCATA
TCTACTAAGTCCTCTAATCTACAAAAACAACCTAAAGAGTCCACAGAGAT
AAAAACCTCGAAACGTGATATTATTAGGTAAAATGAACGTATGAAGTCAG
CTGTGTTTCGGCTAGATCTATTTCTGAAAACACTTTGGTAATTTAGCAAG
CCCTACCAAGAAATTTTGAATGTGCGACgaaatcttttcttttattaCCA
CTTATCTTTCTCTTCATCATAGATGGAGAACATCGCAAATTTTTTAACGG
CAGCCGAGAAATATGGTTGTCATAGAGGAGATCTTTTTCAATCAGTATAC
TTGACTGACGGGCAAAATATGCCAGCGGTTATCGGTGGAATCCATGCCAT
CGGACGAAAGGTTTGTTTCTTATCCATTATTTTCACTAAGTTGATTATGG
TTCACGACAAAAGGGGAGATGATTGTTGCTGGATACAGTGGATCACTATT
TTTATGAGCATACCTCTTTCAAGGGTGTCCCTCAATCGATAGACATGTCC
TTTGAAGAGAAACGTTTTTAAAAACCCTTAGATATGCGCTGCAAGCTAAA
TCTGTGCGTTTGATTTCAATAATATTCATTTTTAATCCACGTTTTGTATC
CACAACCTACAAATATATAATGATTCCCTCGATTGAGCTAGATGCCTATT
AGAGTGCCTCACTggaataagatttttcaaaaaaaattgcgaaattttaC
TAAATATAAGATTGCATGGTGAGCTTAATTTCTTTTTCGCATTTCACGCA
ATTTCTGTTCACGCAgcttttttccaatttcaattCCATTGGGGGCAATG
ATTCATCAAAGCAACTTACTTTTCCGATCGGCACTACCATTATAAATTTT
AATCACTAGATCCTGTCATCaacattatttttgtttatcttcAGGCACAA
ACGAATGGATTCAAAGGACCATTGTTGGGACCCAAAGAATCTTCAGCCAA
CCCTCGCGAATTTTCTGAAGAGCAATTACTCCATGGGCGTGTCCATGGAT
ACTAAGTAATGATACTTCTCTACTCTTTTTCTATACAACTTCCACTCTTC
ACTTTCTTTCCAACTCACATTCTCAAGCATTCAATCACTACAGCTCAATC
ATATCATCATAGCACAGAAACATTTTTATAGCTCACTATCTGCCACCATG
AACATGCTGCCACCGTACTGAACAAATTTCAAAACCTGTCCTCGTCTTTC
TTATTTCACAATTATCACTTTTAATCCATTTGtatattttaatgaatttt
tataACATAGAAACTAGAAAGAAACTTATTTATATACATAAACATAAATA
GCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004708XLOC_004708Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008381-exon-sc0000085-1491911889:80542..80729TCONS_00008381-exon-sc0000085-1491911889:80542..80729Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1510915933:80542..80729TCONS_00008381-exon-sc0000085-1510915933:80542..80729Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1575043694:80542..80729TCONS_00008381-exon-sc0000085-1575043694:80542..80729Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1491911889:82081..82214TCONS_00008381-exon-sc0000085-1491911889:82081..82214Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1510915933:82081..82214TCONS_00008381-exon-sc0000085-1510915933:82081..82214Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1575043694:82081..82214TCONS_00008381-exon-sc0000085-1575043694:82081..82214Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1491911889:82562..82631TCONS_00008381-exon-sc0000085-1491911889:82562..82631Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1510915933:82562..82631TCONS_00008381-exon-sc0000085-1510915933:82562..82631Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1575043694:82562..82631TCONS_00008381-exon-sc0000085-1575043694:82562..82631Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1491911889:82864..83001TCONS_00008381-exon-sc0000085-1491911889:82864..83001Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1510915933:82864..83001TCONS_00008381-exon-sc0000085-1510915933:82864..83001Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1575043694:82864..83001TCONS_00008381-exon-sc0000085-1575043694:82864..83001Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1491911889:83536..83946TCONS_00008381-exon-sc0000085-1491911889:83536..83946Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1510915933:83536..83946TCONS_00008381-exon-sc0000085-1510915933:83536..83946Clytia hemisphaericaexon
TCONS_00008381-exon-sc0000085-1575043694:83536..83946TCONS_00008381-exon-sc0000085-1575043694:83536..83946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:80542..83946 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581602	0.283577	0.219507	0.590571	66.1722	64.9056	174.842	194.225	113.173	132.946	100.429	63.0845	234.316	150.71	111.311	119.122	112.038	134.174	269.609	296.987	41.8464	50.4681	25.785	23.0175	15.2978	30.1017	42.5296	52.65	678.754	836.341
Blast
[Close]
BLAST of TCONS_00008381 vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 1.808e-28
Identity = 68/172 (39.53%), Postives = 100/172 (58.14%), Query Frame = 3 
Query:  138 MANRPVGYGFTAETTKRIDDKYDAESEREAIDWINAVLGGQ--EVSYGKDNVQHALKDGVILCKVMNILQP---GIIGKIHPAESNSFKKMENIANFLTAAEKYGCHRGDLFQSVYLTDGQNMPAVIGGIHAIG--RKAQTNG-FKG-PLLGPKESSANPREFSEEQLLHGR 626
            MANR   YG + E  ++I+ +YDA+ E+  I WI             G++N Q+ LKDG +LC+++N L P     + KI  A + +FK+ME I+ FL AAE+YG +  D+FQ+V L +G+NM  V   +  +G    A+ +G F G P   PK+S  NPR FS+ QL  G+
Sbjct:    1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGK 171
The following BLAST results are available for this feature:
BLAST of TCONS_00008381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAGL21.808e-2839.53Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3[more]
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