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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008428 ID=TCONS_00008428|Name=TCONS_00008428|organism=Clytia hemisphaerica|type=transcript|length=1269bp
TTAAAAGCAAATATAAAATGGCTAAGAATGGTAAATTCAAGACGCTGTTG
TGGTTGTATGTTTTGATCAATCAATCTCACCTTAAAGAATTTCCTTCACC
CAAAAGGTATGTCGATTTGCTTTGTTTTGTTCTGGTCAAAATAatcctga
aaaaaatatttttaaaaatatgtttattttacaaaaaatgtatGATATAA
TATTctatttacaataaatttaaattGTGTTTGACTGCTAATGAACGAGA
GTTATTATTGAAGATCACCAATTCGAGGCTAGGACTGGTTTTTTACGAAA
AGCTGCTCCTCCCAAAGCGTTTGCGAATGCAGCAACTTTCCCTTGCTCCA
TTCTTGAATCATAACCATTTGGGGTACGAGGTTGTGTTTTTGTTCGATTG
GTTGGATGGTATGTTGCCCGGCGATGAAATTTCGGACTTGGTGTACCAAC
ACATGTCCGCTCTATTGGATattgtttcaaagaaaatgatcTTTTGAATT
CTGTCCCCGGCTGTCTTTCTTCGTCTTGCGTCTCTGATTGGCTACGAGAA
AACTGGTTGTTTACTTCTGATTGGTGAAAGCCATGCTTATTTGAATCTAA
TTGGCTTCGGACGTGTTTGttcgaatctgattggctacGAGCGTGTCGAT
AGTCGATAACAAGAGGCTTGCGTTCGGCGTCTTTTTTCAACTGTTCgatc
tttttctctctttcttgTCGAAATTGTTCTTTAATGTTCTTTATAAATTC
TGCTGATCGAGGTAAATAATCGAATGGTTCTTGAGTAGGCTCGATCGTTT
GACTTCCCCATTTTTTATGAAGATTAGCAGAATCGCCATTTTTTTCCTCC
atcttttccaaattttccttCGTATGAACTGTTCCGGTTTTCACATACTC
CGGTTGATACACCGGTATACAACGATATTTAACTGGATGGATTTCTGATG
GAGTTATGggagtttttgtttgttttgtttttgaagctTGGTTTTCTTCA
CGATGACTATTCGTTTTATTTTCGGTAGTATTCGTTATTGACGAGTTTGT
ACCGAAGTATCCGCTATCGAACGAGCAATTATCCGAATTCAAGCGACAAT
CTTGTTTCTCGTTTTCGGTACCGTGATCTTTACTGGTCGACTTTTTGGTA
GTTAAGAAGACCTTGGTGCGGTTCGATTTGTTGTTCCCATGGTTACTATT
GTGTGAGATGATTTTGACGGTTGTCTTTTTGTTGTTCGTACGTTCCATTT
TCGCTGAGTCAGCTGATTC Run BLAST on NCBI transcript from alignment at sc0000085:576671..579413+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008428 ID=TCONS_00008428|Name=TCONS_00008428|organism=Clytia hemisphaerica|type=transcript|length=2743bp|location=Sequence derived from alignment at sc0000085:576671..579413+ (Clytia hemisphaerica)
TTAAAAGCAAATATAAAATGGCTAAGAATGGTAAATTCAAGACGCTGTTG
TGGTAATGTATAAATCTATTTTTCGTGTGTTTTACCTACAGAATTTCTGC
CACAGCGAATCTTCAGTCATTCAGTCATCTTCCAATGTTGTTAGATATAT
CAGTTATTTTATGTCCGCCCTTATTAATGTCGTTTTATTACAGTCATTTT
CAACTAGCACTGATTTTGGAGGGAGGTCGGTAACGCCATGGTCTAATCAA
TATGaagcaagggggggggggggttggtactaaaatctcagacatgttgt
ttagtgacgtggtggtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTATGTAAAACAGCCACATACAGCTATATTTAGCGGTCCCACAAGCT
GtggaaaaacacaaaaagttcTCGATCTAATCGAAAAAGAATATCAGCAT
catagaccagcgtccgagtttcagaaaaggccttaaaacaggttttcgta
gggcaccccttagatcagggcaaatttttgatattttgtcaatTTCGCCT
TATAGAagtcacaaaaaaaatttgcctctGAAAAaccctgcagttttcga
gtaaTTCGATGTTTAAAATCACATTTTACTCGATTTTACTCGATTACTGG
TAGCAATCGAGTTTTGCTTATACGAAGGGTTTACTCAAtggaaaaagaat
aaaaattgcCAGGATGGATAATAACATTGTAAAGATCATTTCTATAATCA
TCAAAAGTCTCTTGTTACCAAAgtgattttcatcatttttatatcatttt
cacAATTCTTtcgtgatttttcaaaaaaattaaaagttttctcGTTCTAA
ATAAAACTTCTTAAGTTCAATTACTTTATTATTCAGTCAAATGTTTTTAG
TGTTTAATCAATTCATAAAATAGCATCAATTAAAAGTATTAATTCTTGCA
AAAATGAATATCATATTGCAAAAAATCAGCACGGACAATGGTCCCGAGAA
GACCTCCTTTTGTCAAAATGTCTctataaattttattacatgtgtACCAA
AATAACACTTCTCTAAAATGGGGTGGTGGTAAGCAAAAAAGTCTCGAAAA
TGCTTTTAGTATTCAGATATGCCTGATGATTTAGTACCAACCCCACCCCC
TGTATGAAGATGGCTGTAGAAATGATTaccaaatgttttgatatttttaa
tgaattgtattttctacaaaacaataataaattttgatgtaaaatTTCTG
ACTTAAAAATATTAATATACGTCATAAAGGTTTTCTGTTTAAATACTGgt
attaaaaaaaagagaactttggcccttttttataagaattattaCTCTGT
TAAAACTTTAACTTAATTTACTTCAGGTTGTATGTTTTGATCAATCAATC
TCACCTTAAAGAATTTCCTTCACCCAAAAGGTATGTCGATTTGCTTTGTT
TTGTTCTGGTCAAAATAatcctgaaaaaaatatttttaaaaatatgttta
ttttacaaaaaatgtatGATATAATATTctatttacaataaatttaaatt
GTGTTTGACTGCTAATGAACGAGAGTTATTATTGAAGATCACCAATTCGA
GGCTAGGACTGGTTTTTTACGAAAAGCTGCTCCTCCCAAAGCGTTTGCGA
ATGCAGCAACTTTCCCTTGCTCCATTCTTGAATCATAACCATTTGGGGTA
CGAGGTTGTGTTTTTGTTCGATTGGTTGGATGGTATGTTGCCCGGCGATG
AAATTTCGGACTTGGTGTACCAACACATGTCCGCTCTATTGGATattgtt
tcaaagaaaatgatcTTTTGAATTCTGTCCCCGGCTGTCTTTCTTCGTCT
TGCGTCTCTGATTGGCTACGAGAAAACTGGTTGTTTACTTCTGATTGGTG
AAAGCCATGCTTATTTGAATCTAATTGGCTTCGGACGTGTTTGttcgaat
ctgattggctacGAGCGTGTCGATAGTCGATAACAAGAGGCTTGCGTTCG
GCGTCTTTTTTCAACTGTTCgatctttttctctctttcttgTCGAAATTG
TTCTTTAATGTTCTTTATAAATTCTGCTGATCGAGGTAAATAATCGAATG
GTTCTTGAGTAGGCTCGATCGTTTGACTTCCCCATTTTTTATGAAGATTA
GCAGAATCGCCATTTTTTTCCTCCatcttttccaaattttccttCGTATG
AACTGTTCCGGTTTTCACATACTCCGGTTGATACACCGGTATACAACGAT
ATTTAACTGGATGGATTTCTGATGGAGTTATGggagtttttgtttgtttt
gtttttgaagctTGGTTTTCTTCACGATGACTATTCGTTTTATTTTCGGT
AGTATTCGTTATTGACGAGTTTGTACCGAAGTATCCGCTATCGAACGAGC
AATTATCCGAATTCAAGCGACAATCTTGTTTCTCGTTTTCGGTACCGTGA
TCTTTACTGGTCGACTTTTTGGTAGTTAAGAAGACCTTGGTGCGGTTCGA
TTTGTTGTTCCCATGGTTACTATTGTGTGAGATGATTTTGACGGTTGTCT
TTTTGTTGTTCGTACGTTCCATTTTCGCTGAGTCAGCTGATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008428-exon-sc0000085-1491911889:576671..576722 | TCONS_00008428-exon-sc0000085-1491911889:576671..576722 | Clytia hemisphaerica | exon |
| TCONS_00008428-exon-sc0000085-1510915933:576671..576722 | TCONS_00008428-exon-sc0000085-1510915933:576671..576722 | Clytia hemisphaerica | exon |
| TCONS_00008428-exon-sc0000085-1575043694:576671..576722 | TCONS_00008428-exon-sc0000085-1575043694:576671..576722 | Clytia hemisphaerica | exon |
| TCONS_00008428-exon-sc0000085-1491911889:578197..579413 | TCONS_00008428-exon-sc0000085-1491911889:578197..579413 | Clytia hemisphaerica | exon |
| TCONS_00008428-exon-sc0000085-1510915933:578197..579413 | TCONS_00008428-exon-sc0000085-1510915933:578197..579413 | Clytia hemisphaerica | exon |
| TCONS_00008428-exon-sc0000085-1575043694:578197..579413 | TCONS_00008428-exon-sc0000085-1575043694:578197..579413 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:576671..579413 + |
Blast
The following BLAST results are available for this feature:
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