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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008435 ID=TCONS_00008435|Name=TCONS_00008435|organism=Clytia hemisphaerica|type=transcript|length=721bp
gaaaataggaaaatatGTTGAAGTGAAAAGAACATCGCGGTTATCTTGTT
TAGGGTGATTATTTTGAGGTTTTCAAAATGACAGAAATGGACTTCAAAAC
CAAAATTACTTACTTATTTCTATTTAGCATCTTTTATATCAAAGGCATCC
ATTCTCTGACATGTTATTCATGTTATGGAGGTGAAAGTTATTGTAATTCA
TCAAAGATAACCACAGTATGTCGAGGACGACAATATTCATGTCTACTTTA
CTTCGCCAACACCAGAGAAATGCAGTCATCTTCAACGGAAAACATCCGAA
AAATGACACAAGGGTGCGCAGTAGAAGATCGAAATTACTGTAAGAAGAAA
AAGGATGGAGACCCTGGTATCCTTTCTTGCTTATTGGTGTTACAAAAACA
AATGTAACTTTCCGAACTACGAAAAAGAAATCGACAACAACATGGAGCTT
GGTAATAACAATGGTTTAATTGGTCCATCTAAAGGCATCGTTGTCAACAA
ACAAAACTCCTACGAAAAGTTCTTCTCGAATGCTGTGTCAGCAGAATCGA
TGGTATTTGTCACTTTCATTTGCTGTGTATATGCCTTTTGTTGTTCTTTA
TGATAGCTGTTATTTTGAAAgattcttttttatcaaaaagtgtaaACAGC
TTTTGTAGAAGAGTCACTGTAtgatttttgattcattttgaaattgagGA
AAATAATAAAGATGGTTCTCG Run BLAST on NCBI transcript from alignment at sc0000085:53304..60772- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008435 ID=TCONS_00008435|Name=TCONS_00008435|organism=Clytia hemisphaerica|type=transcript|length=7469bp|location=Sequence derived from alignment at sc0000085:53304..60772- (Clytia hemisphaerica)
GAAAATAGGAAAATATGTTGAAGTGAAAAGAACATCGCGGTTATCTTGTT
TAGGGTGATTATTTTGAGGTTTTCAAAATGACAGAAATGGACTTCAAAAC
CAAAATTACTTACTTATTTCTATTTAGCATCTTTTATATCAAAGGTAAAA
GTTCGATTTATTATGCAGATTTCAAGTAAGGCTTAGCGGAACAGGTTCTC
CGAAAGTGGAGTAATTTTTAAGTTTAATTGTTTTCCCAAAAATAACAAAA
TACAATTCTTTCACATTTTTAGGCATCCATTCTCTGACATGTTATTCATG
TTATGGAGGTGAAAGTTATTGTAATTCATCAAAGATAACCACAGTATGTC
GAGGACGACAATATTCATGTCTACTTTACTTCGCCAACACCAGAGAAATG
CAGTCATCTTCAACGGAAAACATCCGAAAAATGACACAAGGGTGCGCAGT
AGAAGATCGAAATTACTGTAAGAAGAAAAAGGATGGAGACCCTGGTATCC
TTTCTTGTAAGGTAAAACCTATCTTAATATGATATGCAGCGGAGACAAAA
ACGGATGTAGATTTTTAGCAAGAATTCGAATTCGATAGCGGTTTTGTGCT
TGTGGAAAAGATTTTCAGGTATAAATCGAATTGAAAAGCTAAATAGGAAT
TTAATTCTTCATATTTGATCTTCGTTTTCGAATTTTCTTGAAAAAATTTT
CAAATTATGATATCCCAATCACGATTATCACGATTGCTATATCTTTCCAA
CGAGCACAAAATCGCAATCTGATTGAATCTCTATCAAAAGTTGTTCACGC
TGTAATTTTACTGAGAGCTAATTTGAAAATACTTCTTTCGAATTCTATCG
GAAGTTACAAGCCTTTTTTTGTCTCTGCTATATGTTATATTTATAATACC
AGTGGATAACCCTTAAAACCTATAACAAAAAAGGTACCCCTTATATGCTG
ATAGAAAAAACAGAAACTGAAACTTTTTCTGGTGAGTCTACTGGGCTACA
GTATGAATTTCTACCCTGGGTATGGTTTTTTTGTAAATGCTGCTAAGAAA
ATTTTTATTGCTTCGTGAAAAAATGCAATTTTAGCTATTTACGCCTTAAA
ACCTACAAAATGGTTTTCTTGAATAACTTTCATATAAAATAGTCCTTTTG
GTCTCAAATTTTAACAGTGATTCACTGCAAAGCTAATAATGCTACAATTA
GATCATTGGTACCTAAATATTTTCAAAACTGTACGTTAAAATAAAATTAC
ACCTTACAACATACACTATTACACCTTAAAACCTACAAACATTGACCCCT
TGCTAACAACTCACTGAAACTGTGAAATTGCAATTTAAGTGCTGAACCGT
GATTCAATTGATCAATACATTACATCATCAAATACTTGCTAGAAATCCAT
TCCCAAAACAATATTTGTATTTTTCAGGATTTCATACCCATGATGCAATT
GCGCCTGTTTTTTGTGTGTCAAAAAACGGCCTTGAAGGATCAAAACTTTT
ATTCACCTCATTTTTGACGTATTTTACTAATGTCTTTTTAAATCTCCATC
AAAGAGGCCTCCCAGTCGACCCTCAATTCACGTAATCACGCACAAAATTT
TGCCAATTCACGTATTCACGCGCGAAAAAAACTATTTTTACGTTCACGCG
CCAATTTTGCTTTTATATCTTTGGTTAAAACATGAACATATAAACGACTG
GACGTCCATCTCCTTTGTCTTTTTGTAGAAAGGGCTGCTACAATCATCTG
TGAAAATTGTGAGACTTTCCAGTTAATTCAGGGTCCCCCGCTCCCCCAAA
TCAATGTTGTGGATATCGGAGGAAATTTGACCATCAACGCTTTTCGTATT
CAAACAACATTGACTTGGGGGAGTGGGGGGAGGTGTCAGTCTCACAATAT
TATGCAGATGATGGNNACAGAGGCAAAATCATCGTCAGCTTGTCAAAACT
CCGACTAATATTTCTAAATTTTGACTTAAAAGTGTCTAATAATTTTAGAG
AGTGTCGCATTCTACTTTCGATATTCTTATAACACAGGCTCTAAACTTTG
GCAAGCTATTTTATTCAAGTCATAAAAAAAATTATTGGAGTGACAAAAGG
GATTCAAAAGTATACACGCAGTTGAAATTCTGCATTTTAGAGTTGAAAAT
GTTGATAAAATATGTTACAAACTTGTGAAAAAATTCGAAAATAATTTTTT
TGTACATTAGGAGTAATGTTCAAGCTCTATCAATCCTTTTACCTAAATGA
TTCAAAGAAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCGAAGTTTTATCTAATTTTCGTATATTAAAAGGCTAGAATCTTC
AATACTGATTATTAGAATGTTCAGAGCAAACTTGAGTTCTACTAAAAAGT
CTTATTTCATCGCTCGGGCGAGCTTAGAATTTATTTTGATACATTTTATA
AAAGAAATCAAAAGACTTTAACGACCAATTACCGACACATTCAACTCCTG
TTTTCTTTATACCTCTTTCCGGCAACGAAGCTCGCTTCAAAGAGACAATA
AAAGATAGATGTCCAGTCGTTTATATGTTCATGGTGAAAACAATTGTGAC
CTTATTGGGCTAAATATGACCTTATTATGGTTTTTTAAGCAGTTTGAGCT
ATTTATATGCCAAACATTTTCATCAATATGAAGTTTTCTGCAGTTTTGTG
ACCTTATTCTCGATAAGGTCGACCCTTTAAGGGCTCTGACCATCGTCGGA
AAATTGATTTTAGTATTTGAACATAAAAGTTATGTTTTAGGTTCTTTAAC
ACTTTTAACAAAGAATTTCCTTATAAATCGCTTTTTAATCAAATTCCCTT
GAGAGCAATTAAAAATTTAATTGCAAAAATGACGTTATGAACTTTAAAAA
GACGTTAATAATATGTGACATCACCTTCTTTTATAAAAAGTGCTAAGTTT
TAATGGGTAATTAACCTTTTTGTTTCGAAATTTTCTCAAACTGTCCGCAA
AGAATTGAACTTTTTTAGATTTTTCGAAAAAATTTTCTAAATTAATGCAT
CAAAAGTTATGGCTGTTTTCCTATGAAAAATTGGGTTGGAAAATTGGTCA
AAAAGCACTATTTTCAAGATTTTGAAGGAAATAAGCTTTTAGAAAAATTT
TCCGAAAAAATAATTTTAGTTTGATAAAAGATACACCATTTACCGCAAAA
AAAATTTTCAAAATGTTTTTTCTTCGCCGAAACTAAGCTCTTCAAAGTTG
AAATACTCTTCTTTACAAAAATCTTCATTTGCTTCTTCATCAAATTTTTT
CATTGCGATTCTTAAATTTTCAAACTCACGGATAATTGGCCTAACCGAAT
ATGTATAACATGCCATATTTTTGTGTGCTACATTAAGTAGAAATTTATAC
TTTGTAAGTGGCAAATATTAAAAATTCACTATGGTCAAAGCCCTTAAGGC
ATTTTTTACAGATATTTGAGCTTTAATAAAGCAATGTTTTAGGTCTGCCG
CGCCAAAGTTTCAAAGAACTACCCCTTTGTCTTAGGGTGGGCTTTTGGTG
TGGGATTTCTTCCTCGCAGAGCCTTAGAAAGTCTTTTCTAATTTTAAATC
GAGGTTAGGGCAATCATGGTTTGAGGAGCCATAGACTTCAAAACAAGCTT
CGAAGAGGTGGAGCGGTAGTACAACCAGAGGACACCAATTCCAATGTTTC
ACCTCTATGTCATGAAAGGAAATGTATGGAAAACAACAAGGCGAGCGTAG
CATGCGCGAAATTATTCGACAACTTTCGCTCTTTTATGACTGAACAACGG
CCCTAATACTATTGGCTATTGTTAGTCAAGTATGCCTTGTTTGGTCACAC
AATTCTTTTGAAAATCTTTGATTTTATTTAACACTGACCATTTGTTGGCA
AAAATCTGGTACGGCGAGCGACGTACCTGCCTTACCCGGTGCGACGTTCC
AAGAGTTTCGCTCAAGAGGAAACTTTTAAGATTTAGAATGACTAGATTGT
TTGAAAACGCATCACGTGTCCATTATCTATGAGAATTATTTTTTAATTGT
TCGATGCTGCATACATACAAGATGTTTTAGAACTACCTACTTTTGCAAAT
TATTGAAGGAGCAAAAATCCTCTAAGTTAATGCGGTATCATTTTGTGTAT
TGCAGTAACAATATAAGTGACTACGTAAAGTCGACCATTATTAAATGCTT
ACGGAGAAAATTTTCTCTAGACTATTTTGACTATTTGCTTTTCACGTTCA
AGCTAAAAATCTCGATTCACGAATTCACGGTGGAAAAATGTTATTTTCAC
GTTCACTCTGATATCTCAATTCACGTATTCACGCGCTAAAAAAGTCCAAT
TCACGTATTCACGTCAGAAAAAATGCTCATTTACGTGTCACGCCAGCGCC
TAGGGGAGCCCTATCAAATTTGTGACAATTTGGTATGCAATATGACAAAG
TTTTGAGAAAGTTAATTTTCAGATTTTATTGGTTACTACCATAAATGAGC
TTTAAAATAGAACTTTGAGGGCCTTACGATTTCTTTAGGGTGTAACCATA
GAGAAGAAAATGATTTCTTCGTACCTACCATAAGTATAGGTACCTAAATA
GTATAGGTTTTATGACATTAATTTCATTTGTGTAATCTCTAGGTCCGAAA
TATAAACTTGATTTTTTGAAGGGATTTTTGATAAAATTTTCAATAACTTC
GAATTTTACGACACTTTGCGATGATTAAAATTCTTGAAATTAGGTATTTT
ATGAAAGTACCTATATTAGAGATTGTAAAAAAGTGAATTAAACAATATTA
AATTAAGTTTGGTGGTTAAGAGAGGCCAAATAACTTGTTGGTTTTAAGGG
GTATGTGGTTTTAAGGGTACCACTGGTAGAGACTGACTTCTTTTTTTAAG
GTACGTGTACACCTTTTTCCGATTTTTTGTCAAAAAATTCTTTTTCAGTC
AAAGTGGAAGAAAAGTTATTGGATTTCATTTTGGTAAAATCGCGATCTTA
AAATCTTTTTTTGATCCAGAGTTATAACCATTTAAATTTCAAAACAAAGT
TCGTCTTATGATGGATTATTTACTCAAATAATTGTCTCTTTCGGAAACAA
CAAAGGGCCCCAACAAAGACAAAAGAGAGAATTCAGCTGATGTTTATTCT
CACCTCTATTGAATAGTAATATTTTTGACACATTTCACTGATTACTCAAA
TAAACAGCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGCAATC
ATCTCGTTAAAAATTTCAAATTGATGTAGAAAAAAAACGAAATTTTACCA
CACCATACTACTTTTAACGAAGTTAAAGTCACCCATAGCATTTTTTTATG
AGATTCCCAAAAGATCAAACTTAAAAAGTGTCTTAGGATTTTATTTCTAA
GCGAGTTGTTTTTCCTCAATTTACAGATGATTGAAAAATTCACATTTAAA
TTTACTTTTTTATCGATATTTTTACAGAATTTAGGATTTGAAGAGTTAGA
GTCAATCCCAAAAAAAATCCCAAGATGCTTTTTTAGTTCAATCTATTGGG
AACATAGTATCGAAATTATTTTTTCAAAATTCAAAAGCTATGGGTTAACT
TCTTTGAAGTAGGTAAGGTTAAAATTCTTAAGATTTTAATTATATCCTGC
CCAGTTTTTTAAATTCAGCTGAAACCATTACCATTAGAAAGAGAATATTA
TTGGCTTTCAGAAAATATATTCTTTTGATATATAAAAATTTGTTGTTCTA
AAGATATGATCAATTAAAGAGAATGTGTCAAGAAAGGTGAACTCATACCT
TAAGGGCTCTGGTCATAGTGAAAAATCAATTTCAGAATTTGAAGATAAAA
CCTTATGTTTTCGCTTCTTTGACATGTTTAAGAACAAACTGCTTTTGAAA
AAATGAATTTAAGTAATTACATCATGACTAATTAAGGAATAAGTGTGGCA
TGGACCTTAATAAAGCGTCATAACGACGCTATTCATATACTTATCACAAA
AAAGCCTCTGTAATCTCCTTGGGGAAATCATTTTATTGTTTCAAACTTTT
TTAAATTGATGACAAATAATTTCTTTATTTAGACTTTTCCGGAAAAATTT
TCTATTTGGCCACATCCCAAGTTATAGCTGTTTTCGTATGGAAATTTAGT
GGAGAAAATTGCCAAAAATGAGGTTTTTTGGAGATTTTCCGAAATTATAT
ATTTTTAGATACTAAATAGATACATCACCTGAACCAAAAAAAAATCCAAA
ATGTTTCATTTTTACTGAGATTAGGGCTTTGAAAGGTGAAATACTCTTCT
TCGAAAAACTCTTCGTTTTCTTCTTGATTTATTTTTTTCATTTCAATTTT
TCGATTTTTAAATTCTAAAAAGGTAGGTTTAACAGGACATATAAAAAAAG
TTACACATTAATCTTTTTAAAATGCAGAAATTGCCATTTAAGTTGGTGTA
AAATCGAAAAATTGTCCAGAGCCCTTATTTGCCAAACAAACTTAAGTTTG
AAACAAGCAATGGAAGAATTTTTTTTTCGTTTTTTATTGAACAAATTATC
TTTTTGGCTAAAAATATACAAATCCATAGCGATTTTTGCGAAATTCTAAC
TGCTTTTTACGATATTTTTTTTCTAGGCTTATTGGTGTTACAAAAACAAA
TGTAACTTTCCGAACTACGAAAAAGAAATCGACAACAACATGGAGCTTGG
TAATAACAATGGTTTAATTGGTCCATCTAAAGGCATCGTTGTCAACAAAC
AAAACTCCTACGAAAAGTTCTTCTCGAATGCTGTGTCAGCAGAATCGATG
GTATTTGTCACTTTCATTTGCTGTGTATATGCCTTTTGTTGTTCTTTATG
ATAGCTGTTATTTTGAAAGATTCTTTTTTATCAAAAAGTGTAAACAGCTT
TTGTAGAAGAGTCACTGTATGATTTTTGATTCATTTTGAAATTGAGGAAA
ATAATAAAGATGGTTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008435-exon-sc0000085-1575043694:60629..60772 | TCONS_00008435-exon-sc0000085-1575043694:60629..60772 | Clytia hemisphaerica | exon |
| TCONS_00008435-exon-sc0000085-1575043694:60267..60500 | TCONS_00008435-exon-sc0000085-1575043694:60267..60500 | Clytia hemisphaerica | exon |
| TCONS_00008435-exon-sc0000085-1575043694:53304..53646 | TCONS_00008435-exon-sc0000085-1575043694:53304..53646 | Clytia hemisphaerica | exon |
| TCONS_00008435-exon-sc0000085-1510915933:60629..60772 | TCONS_00008435-exon-sc0000085-1510915933:60629..60772 | Clytia hemisphaerica | exon |
| TCONS_00008435-exon-sc0000085-1510915933:60267..60500 | TCONS_00008435-exon-sc0000085-1510915933:60267..60500 | Clytia hemisphaerica | exon |
| TCONS_00008435-exon-sc0000085-1510915933:53304..53646 | TCONS_00008435-exon-sc0000085-1510915933:53304..53646 | Clytia hemisphaerica | exon |
| TCONS_00008435-exon-sc0000085-1491911889:60629..60772 | TCONS_00008435-exon-sc0000085-1491911889:60629..60772 | Clytia hemisphaerica | exon |
| TCONS_00008435-exon-sc0000085-1491911889:60267..60500 | TCONS_00008435-exon-sc0000085-1491911889:60267..60500 | Clytia hemisphaerica | exon |
| TCONS_00008435-exon-sc0000085-1491911889:53304..53646 | TCONS_00008435-exon-sc0000085-1491911889:53304..53646 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:53304..60772 - |
Blast
The following BLAST results are available for this feature:
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