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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008438 ID=TCONS_00008438|Name=TCONS_00008438|organism=Clytia hemisphaerica|type=transcript|length=748bp
AAAATTGGATGATCAGAAGATGAGTGGGGAAAATGTTTTGGAACATGAAC
AGAAAATGTTGCATTTGGAAGTCCTCAAAACGCTCAAGCCGAAATTATCA
CAACTTGAAACATTGAAAGCGAAGATTTTATGTGAAGTTGAACGTTGCTT
GAAAGAAATCTCTACCAGTGAAGAATGTGAGAGAGAAATTCATATTTTGG
AAATGGAGAAAAGATTACATGAAGAAGCTATCAAAAATCTCGATAAAGAT
ATTAACGAGTTGAAAACATCGGTGTCACAATCAAAAGTGGAACAAGATAT
CCTGAAATCGCATGCAAAACAACTCGTTGATGAATTCAATCCACTGAAAC
GAGAAGTGAATGAGATTCGTACATCCATTGGACTTGATACCTTGCCCGAC
CTAACGGAAGTTGACGTCAtactgaaaaagaagaaatgatTTTGATGTCG
GTATCATTGTTGGGTTTCACGGAGAACTATATTCTTACGGAGAATGGTAG
AGAAGAAACATTGGAAACACTTAAGAAAAAAGACGATGAAAGTCACAACC
GGCGTCACTTTGGCTTGGCTTTCTACAATGCAATAATGATGGACCTCGGA
AAGTCTGCTAAGTAAAAAACAATTGATAAAATTCTTTCATTCATGGGAAA
AGATCAAGGTAATAACAGTCTTCTTTACTTGACTATATGATAAAGAACAT
TTGATATTTTCGTTGGAAAGTTGTATACATATTGAAGAAGGAAACATG Run BLAST on NCBI transcript from alignment at sc0000085:84721..89170- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008438 ID=TCONS_00008438|Name=TCONS_00008438|organism=Clytia hemisphaerica|type=transcript|length=4450bp|location=Sequence derived from alignment at sc0000085:84721..89170- (Clytia hemisphaerica)
AAAATTGGATGATCAGAAGATGAGTGGGGAAAATGTTTTGGAACATGAAC
AGAAAATGTTGCATTTGGAAGTCCTCAAAACGCTCAAGTAAGTCAAGNAA
AATTGGATAATCAGAAGATGAGTGGGGAAAATGTTTTGGAACATGAACAG
AAAATGTTGCATTTGGAAGTCCTCAAAACGCTCAAGTAAGTCAAGTCCTT
CCTTGAATGTCAAACAATGTTCATTTAACGTTCTCAACACGTCCATAAAA
CGTTGGATGAAAGATAAAACAAGGTTGTGTGTAAGCTCGATTTATGTGAA
TAGGGGAAGAAGGAAGCTTTGTTTTTCGTAGATTCGTCAGATTCTTCAAT
GATTTTTATTTATACACTTAAAGTTGAGCAGGTGTCAGAGGCTATTGTTT
GACATGAAACGAGAATATACTAAGCACTACACTGCAAAATAGCGCATGCA
CAGCACATGCGTCAGTTAATGCACAGTGAGTAAAATGAAATATTTTAAGT
GTACAAACTTTCGTGAGTAGAAACTTTCGCGATTTTCGTGAATTTTGGCC
TTTTTCGCGAAAGTAAATTCGTTTGAAAATTCTTAACAAGGTGATTCGCG
AAAGTTTTTGCTCGCGAAAAATTTTTAAAAAGTTGAAAATCTATGGAGCT
TCGACATCCTGCTAAAAAAAATTAATTGTAACATTTTTATGCCTTAAGAG
CGTTATTGATGTCATAGAATACCAGTTTGAATCAGATTTAATAAGTATTT
GTCACTTTCAAGCCTTTTTTTGGATTAAAATTTTCATTTTGATTACCCAA
TTCGCGAAAATAAATGTCGTACATTTCGCGAATTTTCGACCCCGCGAAAG
TCTGTACGCCTAAAGTATTCTTGGGGTTTATTTTTATCTTTACTTTTAAA
GAGATAAATTTGTTTATACTTTCCTCTCCATCTTCATCAGGCCGAAATTA
TCACAACTTGAAACATTGAAAGCGAAGATTTTATGTGAAGTTGAACGTTG
CTTGAAAGAAATCTCTACCAGTGAAGAATGTGAGAGAGAAATTCATATTT
TGGAAATGGAGAAAAGATTACATGAAGAAGCTATCAAAAATCTCGATAAA
GATATTAACGAGGTATGCAAAATGAGGCTTACTCTTGTCTTCCGAATAGA
CGCCCCCCCCCGCTAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAC
GCCTCACCTGACGGAAACTTACAGCTTGACTGCTCACTTATTAAGGCCGC
TACCCACTCAGTATTTTATGGTCGGCGAACAAGGCGTACAGCTCGGGCGC
TTTGGTCGCAGAACGCTTTTCCCATTCCACTGATCAATAGTCGAACGTGC
GCAACGCACTGGGCTCAACTTCAGTGGCTTCAAATTATTCATAGGCCCAA
TTGTAGACCCCCAGATATTTACGCAATGAACAAGTGTGTCAAATTTCAAC
CAAATCCGACCATTTTGGAGGCCTGTAGGCTGCTTCAAAGCTTTAGCCTC
GTTTTGGCAAAAAAATCGTCCCTAGGCCCCAAAAATCTAAATTTTTGAAA
AATGCAAAAAATACCCCCAGATATTCACCCAAGGAACAAGTGTGCAAAAT
TTTAGCCAAATCAAACAATTTTTGAAGTCTCCAGGCTGCCCCAGAGTTTT
AGCCTCGTTTTGGCGAAAAACTCGTCCCCAGGCCCCAAAAATCAAAATTT
TCAAAACATGAAAAAAAACACCACCAGATATTCACCCAAGGAACAAGTGT
GCAAAATTTTAGCCAAATCAAACAATTTTTGAAGTCTCCAGGCTGCCCCA
GAGTTTTAGCCTCGTTTTGGCGAAAAACTCGTCCCCAGGCCCCAAAAATC
AAAATTTTCAAAAAACGAAAAAAAACACCACCAGATATTCACCCAAGGAA
CAAGTGTGCAAAATTTCAGCCAGATCGAACAATTTTTGAAGTCTTCAGGC
TGCCCCAAAATATTAGCCTCGTTTTGGCGAAAAACTCGTCCCCAGGCCCT
AAAAATCAAAATTTTTGAAAAATGAAAAAAACTCCCCCAGATATTTACCC
AAGGAACAAGTGTGCAAAATTTCAGCCAAATCGAACAATTTTTAAAGTCT
CCAAGCTGCCCCAAAGTTTTAGCCTCGTTTTGGCGAAAAACTCGTCCCCC
GGCCCTCAAAATCAAAATTTTTGAAAAATGAAAAAAACCCCCCCAGATAT
TCACCCAAGGAACAAGGGTGCAAAATTTCAGCCAGATCGAACAATTTTTG
AAGTCTTCAGGCTGCCCCAAAATATTAACCTCGTTTTGGCGAAAAACTCG
TCCCCCGGCCCTCAAAATCAAAATTTTTGAAAAATGAAAAAAACCCCCCC
AGATATTCACCCAAGGAACAAGGGTGCAAAATTTCAGCCAGATCGAACAA
TTTTTGAAGTCTTCAGGCTGCCCCAAAATATTAACCTCGTTTTGGCGAAA
AACTCGTCCCCCGGCCCTCAAAATCAAAATTTTTGAAAAATGAAAAAAAC
CCCCCCAGATATTCACCCAAGGAACAAGGGTGCAAAATTTCAGCCAGATC
GAACAATTTTTGAAGTCTTCAGGCTGCCCCAAAATATTAACCTCGTTTTG
GCGAAAAACTCGTCCCCCGGCCCTCAAAATCAAAATTTTTGAAAAATGAA
AAAAACCCCCCCAGATATTCACCCAAGGAACAAGGGTGCAAAATTTCAGC
CAGATCGAACAATTTTTGAAGTCTTCAGGCTGCCCCAAAATATTAACCTC
GTTTTGGCGAAAAACTCGTCCCCCGGCCCTCAAAATCAAAATTTTTGAAA
AATGAAAAAAACTCCCCCAGATATTTACCCAAGGAATAAGTGTGCAAAAT
TTCAGCCAAATCGAACAGTTTTTGAAGTCTCCAGGCTGCCCCAAAGTTTT
GGGACATACACACACACAGACAGACACACACACACACATTGTCAGATTCT
AACTCAACTGAAGTTGAGAAAAATAAAGGGGAGATATGCTGCATTTTCTT
TTTTCTATTGTTGATATCTTTTTGCACACGGTACAAGAGAGTTAAATGTC
TCTTCTGATCGGCTATTTAAAAAAGAACAATAGGGAAGCCGCACAGCCTA
GCGAAAAAAGTTGAAAAGTTTCAACTCTTGTTGCACTCAAGGCGACAGCC
TTGGAAGGCTTGATTTATGTAATTTATGCAATAGTTAAGCCGCGCGCCTT
GTTCGACGACCATAAAATGCTGAGTGGGTAGCGACCTTTAGAATTCTATT
CGGGAGACAAGAGTAAGTATGGCGTTCTAAATCTGATTGACACGACTTCG
TAATTTCTCACTTTAAAACCTGAAAACCTTTGGTATATATTAGTATTTCA
ATAATTGTACTCGATTTTGTGAGCTGAAGGGTATGTGACGCCCGACCTCC
ATTTGCCTAAGTATCCTCCCGGGCAATTATATTTCCAGATTTATCTCTCT
TCTTACACCAGGGCTATATTTTCTTCTAGAAATAAAAATTGACAAGCTTT
TTGGCCAGTTCTTATAAAAGTTTAATAGTTTCTCATTTTCGATCTGCCTC
CTCATTTTCAGTTGAAAACATCGGTGTCACAATCAAAAGTGGAACAAGAT
ATCCTGAAATCGCATGCAAAACAACTCGTTGATGAATTCAATCCACTGAA
ACGAGAAGTGAATGAGATTCGTACATCCATTGGACTTGATACCTTGCCCG
ACCTAACGGAAGTTGACGTCATACTGAAAAAGAAGAAATGATTTTGATGT
CGGTATCATTGTTGGGTTTCACGGAGAACTATATTCTTACGGAGAATGGT
AGAGAAGAAACATTGGAAACACTTAAGAAAAAAGACGATGAAAGTCACAA
CCGGCGTCACTTTGGCTTGGCTTTCTACAATGCAATAATGATGGACCTCG
GAAAGTCTGCTAAGTAAAAAACAATTGATAAAATTCTTTCATTCATGGGA
AAAGATCAAGGTAATAACAGTCTTCTTTACTTGACTATATGATAAAGAAC
ATTTGATATTTTCGTTGGAAAGTTGTATACATATTGAAGAAGGAAACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008438-exon-sc0000085-1575043694:89084..89170 | TCONS_00008438-exon-sc0000085-1575043694:89084..89170 | Clytia hemisphaerica | exon |
| TCONS_00008438-exon-sc0000085-1575043694:88059..88230 | TCONS_00008438-exon-sc0000085-1575043694:88059..88230 | Clytia hemisphaerica | exon |
| TCONS_00008438-exon-sc0000085-1575043694:84721..85209 | TCONS_00008438-exon-sc0000085-1575043694:84721..85209 | Clytia hemisphaerica | exon |
| TCONS_00008438-exon-sc0000085-1510915933:89084..89170 | TCONS_00008438-exon-sc0000085-1510915933:89084..89170 | Clytia hemisphaerica | exon |
| TCONS_00008438-exon-sc0000085-1510915933:88059..88230 | TCONS_00008438-exon-sc0000085-1510915933:88059..88230 | Clytia hemisphaerica | exon |
| TCONS_00008438-exon-sc0000085-1510915933:84721..85209 | TCONS_00008438-exon-sc0000085-1510915933:84721..85209 | Clytia hemisphaerica | exon |
| TCONS_00008438-exon-sc0000085-1491911889:89084..89170 | TCONS_00008438-exon-sc0000085-1491911889:89084..89170 | Clytia hemisphaerica | exon |
| TCONS_00008438-exon-sc0000085-1491911889:88059..88230 | TCONS_00008438-exon-sc0000085-1491911889:88059..88230 | Clytia hemisphaerica | exon |
| TCONS_00008438-exon-sc0000085-1491911889:84721..85209 | TCONS_00008438-exon-sc0000085-1491911889:84721..85209 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085 | supercontig | sc0000085:84721..89170 - |
Blast
The following BLAST results are available for this feature:
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