TCONS_00008514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008514
Unique NameTCONS_00008514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008514 ID=TCONS_00008514|Name=TCONS_00008514|organism=Clytia hemisphaerica|type=transcript|length=330bp
TCAAATTAGAGTATTTTTATATCTATATGGACTTTCATTTTTCTGGTATG
caagaggtcaattttgaaggaactcacttatcttttttttgatCATATAT
CCAGATAATGGTTGTAGATCGattttagtatgtaatattagcTGGTTCCA
GTTTAAAAGAGATTGGTACTTAATCGATTTCAATCCATAGTTTAATGTTT
TGGCTTTTGGGCGCTCCAAAAATTTCAGTTCGTTATTTCTAGTAAGATAA
TTATGAGACAGAGTTTTGAAGTTTAAAATGTTTGTAACAGCTTCAGGAGA
AAGATTAGTGAGAGTTTGATGTACGAGTCG
Run BLAST on NCBI

transcript from alignment at sc0000085:446955..447284

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008514 ID=TCONS_00008514|Name=TCONS_00008514|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at sc0000085:446955..447284 (Clytia hemisphaerica)
CGACTCGTACATCAAACTCTCACTAATCTTTCTCCTGAAGCTGTTACAAA
CATTTTAAACTTCAAAACTCTGTCTCATAATTATCTTACTAGAAATAACG
AACTGAAATTTTTGGAGCGCCCAAAAGCCAAAACATTAAACTATGGATTG
AAATCGATTAAGTACCAATCTCTTTTAAACTGGAACCAgctaatattaca
tactaaaatCGATCTACAACCATTATCTGGATATATGatcaaaaaaaaga
taagtgagttccttcaaaattgacctcttgCATACCAGAAAAATGAAAGT
CCATATAGATATAAAAATACTCTAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004763XLOC_004763Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008514-exon-sc0000085-1491911889:446955..447284TCONS_00008514-exon-sc0000085-1491911889:446955..447284Clytia hemisphaericaexon
TCONS_00008514-exon-sc0000085-1510915933:446955..447284TCONS_00008514-exon-sc0000085-1510915933:446955..447284Clytia hemisphaericaexon
TCONS_00008514-exon-sc0000085-1575043694:446955..447284TCONS_00008514-exon-sc0000085-1575043694:446955..447284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:446955..447284 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.51834	2.28729	2.98774	4.22216	4.34929	0.937328	1.88474	1.76448	0.49414	0.612072	1.78228	0.976333	0.77998	0.495905	0.499458	0.71466	0.440201	0.225596	0	0.978431	1.41739	1.65925	1.68086	0.611258	0.314791	1.12377	1.60812	1.28717	1.3017	0.994667
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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