TCONS_00008539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008539
Unique NameTCONS_00008539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008539 ID=TCONS_00008539|Name=TCONS_00008539|organism=Clytia hemisphaerica|type=transcript|length=791bp
TGGACTTACTGGTGCAGAGACATCACACCGCACGAATATGATGTTCATCC
AGCCCGAATCTTATATCAAATCGAATCTCAGCAAAGATACTGAACAGTCT
GTACACGTTCATGACGTAACACGTTTGAAAAACTTCACAAGAGAGCAACA
CAAAATCCTTAAATATTCTACAAGTTCTAGAGGGGCACCATTGCCAATAA
ACGCAGTCGACATCACAGCGCTGTCAAGTTCTGACTCAATAAGGAAAAAG
ATGTTTATTCATGCTGCTTTGCGCATCGACGAGTCAGAAAAAGAAGTGCC
TGATATTGGTGCCTTCACAGGATTCATGAGCTCAATATCTCCGATTGAAA
CCAAGTCTAAACCATACTACCATGTTAGCCTACCCAAGTCACCTTCTAAA
TCTGTTGTTTACACATTAATGAAGAAGGCTGCCGATGCGGCCTCTTATAA
ACGTATGCCGTTCATTCAATTTGTTGGCGACCAACCCGTTTACACCCACA
TGATGGAATTGAAATACGAAAACAGTGAGATGTTCGAAAAGGTCATTCCT
GTTCTGGCCCCGTTTCACACGCAAATGTCCTTCATTAGTGCAATTTTCAA
GAGAATCAATGGATCGGAAATATCTGATTTGGTTGTCAATGCTGGACTTA
TAGCAGAGGGATCAGCAGAGCAGGCATTGAAAGGAAAACACTACAACCGA
GCACAGCGTCTCTACAAATTAATCTACGAATCACTTGCTCGGATTTTGAT
CAATCTTGGTATCGACAAAGAAATCAAATTCCCGGAAAATC
Run BLAST on NCBI

protein sequence of TCONS_00008539-protein

>TCONS_00008539-protein ID=TCONS_00008539-protein|Name=TCONS_00008539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
GLTGAETSHRTNMMFIQPESYIKSNLSKDTEQSVHVHDVTRLKNFTREQH
KILKYSTSSRGAPLPINAVDITALSSSDSIRKKMFIHAALRIDESEKEVP
DIGAFTGFMSSISPIETKSKPYYHVSLPKSPSKSVVYTLMKKAADAASYK
RMPFIQFVGDQPVYTHMMELKYENSEMFEKVIPVLAPFHTQMSFISAIFK
RINGSEISDLVVNAGLIAEGSAEQALKGKHYNRAQRLYKLIYESLARILI
NLGIDKEIKFPEN
Run BLAST on NCBI

transcript from alignment at sc0000086:278209..279126+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008539 ID=TCONS_00008539|Name=TCONS_00008539|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at sc0000086:278209..279126+ (Clytia hemisphaerica)
TGGACTTACTGGTGCAGAGACATCACACCGCACGAATATGATGTTCATCC
AGCCCGAATCTTATATCAAATCGAATCTCAGCAAAGATACTGAACAGTCT
GTACACGTTCATGACGTAACACGTTTGAAAAACTTCACAAGAGAGCAACA
CAAAATCCTTAAATATTCTACAAGTTCTAGAGGGGCACCATTGCCAATAA
ACGCAGTCGACATCACAGCGCTGTCAAGTTCTGACTCAATAAGGAAAAAG
ATGTTTATTCATGCTGCTTGTAAGTACTATTGCTGATATTTCAGGTTTCA
AAAGCATTGATGCCGAGAGAAATAAAATAATCTATTCCATAAGTATTCgg
attcgattttttgaaatatcggACTTATTTTTGCTCTTCCTTTTAGTGCG
CATCGACGAGTCAGAAAAAGAAGTGCCTGATATTGGTGCCTTCACAGGAT
TCATGAGCTCAATATCTCCGATTGAAACCAAGTCTAAACCATACTACCAT
GTTAGCCTACCCAAGTCACCTTCTAAATCTGTTGTTTACACATTAATGAA
GAAGGCTGCCGATGCGGCCTCTTATAAACGTATGCCGTTCATTCAATTTG
TTGGCGACCAACCCGTTTACACCCACATGATGGAATTGAAATACGAAAAC
AGTGAGATGTTCGAAAAGGTCATTCCTGTTCTGGCCCCGTTTCACACGCA
AATGTCCTTCATTAGTGCAATTTTCAAGAGAATCAATGGATCGGAAATAT
CTGATTTGGTTGTCAATGCTGGACTTATAGCAGAGGGATCAGCAGAGCAG
GCATTGAAAGGAAAACACTACAACCGAGCACAGCGTCTCTACAAATTAAT
CTACGAATCACTTGCTCGGATTTTGATCAATCTTGGTATCGACAAAGAAA
TCAAATTCCCGGAAAATC

Coding sequence (CDS) from alignment at sc0000086:278209..279126+

>TCONS_00008539 ID=TCONS_00008539|Name=TCONS_00008539|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at sc0000086:278209..279126+ (Clytia hemisphaerica)
GGACTTACTGGTGCAGAGACATCACACCGCACGAATATGATGTTCATCCA
GCCCGAATCTTATATCAAATCGAATCTCAGCAAAGATACTGAACAGTCTG
TACACGTTCATGACGTAACACGTTTGAAAAACTTCACAAGAGAGCAACAC
AAAATCCTTAAATATTCTACAAGTTCTAGAGGGGCACCATTGCCAATAAA
CGCAGTCGACATCACAGCGCTGTCAAGTTCTGACTCAATAAGGAAAAAGA
TGTTTATTCATGCTGCTTTGCGCATCGACGAGTCAGAAAAAGAAGTGCCT
GATATTGGTGCCTTCACAGGATTCATGAGCTCAATATCTCCGATTGAAAC
CAAGTCTAAACCATACTACCATGTTAGCCTACCCAAGTCACCTTCTAAAT
CTGTTGTTTACACATTAATGAAGAAGGCTGCCGATGCGGCCTCTTATAAA
CGTATGCCGTTCATTCAATTTGTTGGCGACCAACCCGTTTACACCCACAT
GATGGAATTGAAATACGAAAACAGTGAGATGTTCGAAAAGGTCATTCCTG
TTCTGGCCCCGTTTCACACGCAAATGTCCTTCATTAGTGCAATTTTCAAG
AGAATCAATGGATCGGAAATATCTGATTTGGTTGTCAATGCTGGACTTAT
AGCAGAGGGATCAGCAGAGCAGGCATTGAAAGGAAAACACTACAACCGAG
CACAGCGTCTCTACAAATTAATCTACGAATCACTTGCTCGGATTTTGATC
AATCTTGGTATCGACAAAGAAATCAAATTCCCGGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004780XLOC_004780Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008539-proteinTCONS_00008539-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008539-exon-sc0000086-1491911889:278209..278477TCONS_00008539-exon-sc0000086-1491911889:278209..278477Clytia hemisphaericaexon
TCONS_00008539-exon-sc0000086-1510915933:278209..278477TCONS_00008539-exon-sc0000086-1510915933:278209..278477Clytia hemisphaericaexon
TCONS_00008539-exon-sc0000086-1575043694:278209..278477TCONS_00008539-exon-sc0000086-1575043694:278209..278477Clytia hemisphaericaexon
TCONS_00008539-exon-sc0000086-1491911889:278605..279126TCONS_00008539-exon-sc0000086-1491911889:278605..279126Clytia hemisphaericaexon
TCONS_00008539-exon-sc0000086-1510915933:278605..279126TCONS_00008539-exon-sc0000086-1510915933:278605..279126Clytia hemisphaericaexon
TCONS_00008539-exon-sc0000086-1575043694:278605..279126TCONS_00008539-exon-sc0000086-1575043694:278605..279126Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086supercontigsc0000086:278209..279126 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.121917	0	0.13804	0.231989	0.411029	0.0649601	0.156743	0.0882067	0	0.254512	0	0.243587	0.162166	0	0.0692283	0.28721	0.0915224	0.212717	0	0.135617	0	0.172487	0.0990905	0.19063	0.805778	0.543419	0.263833	0.113452	0.0959224	0.275735
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top